mRNA_L-elsbetiae_contig5615.13949.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5615.13949.1
Unique NamemRNA_L-elsbetiae_contig5615.13949.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5L0N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N2_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 9.600e-140
Identity = 314/509 (61.69%), Postives = 358/509 (70.33%), Query Frame = -2
Query:   49 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIAS----YRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQALEPDVMYPLWELVSVAEKKGNPEEASVWRQYGYETLNLAMVRSSMVSGGEAGVGEAGGXXXXXXXXGGGRL------------KDTTDTAAVIQSLTLNMVRFGPSEGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVRKAGRLRE 1527
            CGR  LD++FVGRWSTV GS DP+AW++AAD+IRA+L NLELT+E              XXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXXXXXXXXXXXXXXX    R ++RKA+LRAGFRDLV   GDD  R LYL+LAVLPDGHEFTVKDAAVLL G G                    R             R++L  LEA  IL  +GGRG  R  AS    +RMH AHS FARE+LL+C +IL  AV  WVGF+SSLDAVLFF+P  LARLW AVEDVGG  WRD RPYE AL  IDN DPLCR+CLVAVAKFR AE DW+GAS+MWRRLL+VEQ+A EP+VMYP+WELV+ AE  G PEEA+ WR+YG ETLNLAMV+S+MV   E G  ++G XXXXXXXX                 K + DTA+V++SL LN+VRFGPS G +AEMMLRRALEIEVARRGPDD +VA TL RLGVCVR+AGRL+E
Sbjct:  562 CGRTVLDLAFVGRWSTVCGSKDPMAWRNAADSIRAELNNLELTREDDDARSSVTVAGKVXXXXXXXXXXXXXXXXXXXXXXIEDGAPASVITGSEXXXXXXXXXXXXXXXXXXXXXXXH--GRESQRKAILRAGFRDLVSVAGDDDSRLLYLSLAVLPDGHEFTVKDAAVLLHGDGS------ARCGDGIVAAAGGRGXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRRSASSPSSFRMHEAHSAFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPFALARLWSAVEDVGGKGWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRGAEGDWDGASLMWRRLLTVEQRAQEPNVMYPVWELVNAAENGGKPEEAAAWRRYGRETLNLAMVKSTMVPP-ETGARDSGXXXXXXXXXXXXXXXXXXXXXXXXXPKRSADTASVLRSLALNIVRFGPSHGVEAEMMLRRALEIEVARRGPDDPQVAVTLGRLGVCVRQAGRLKE 1061          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: D8LJY3_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY3_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 4.540e-106
Identity = 271/467 (58.03%), Postives = 304/467 (65.10%), Query Frame = -2
Query:   70 VAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADR----GIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQALEPDVMYPLWELVSVAEKKGNPEEASVWRQYGYETLNLAMVRSSMVSGGEAGVGEAGGXXXXXXXXGGGRLKDTTDTAAVIQSLTLNMVRFGPSEGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVR 1458
            +AW+DAAD+IRA+L NLELT+E              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     +  R ++RKA+LRAGFRDLV   GDD  R LYL+LAVLPDGHEFTVKDAAVLL G G                 XX               R++L  LEA  IL  +GGRG  R      +S+RMH AHSGFARE+LL+C +IL  AV  WVGF+SSLDAVLFF+P  LARLW AVEDVGG  WRD RPYE AL  IDN DPLCR+CLVAVAKFR AE DW+GAS+MWRRLL+VEQ+A EP+VMYP+WELV+ AEK G PEEA+ WR+YG ETLNLAM                            GRLK+                         AE +LRRAL IE AR G DD RVA TL  LGVC+R
Sbjct:    1 MAWRDAADSIRAELNNLELTREDDDARSSVTVAGKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAA--QHGRESQRKAILRAGFRDLVGVAGDDDSRLLYLSLAVLPDGHEFTVKDAAVLLHGDGS----ARCGDGMAAASAXXXXXXXXXXXXXXXXXRRVLRVLEARGILTASGGRGGRRKSTSSPSSFRMHEAHSGFAREILLDCPKILGWAVGRWVGFLSSLDAVLFFDPSALARLWSAVEDVGGKGWRDGRPYETALEAIDNYDPLCRVCLVAVAKFRSAEGDWDGASLMWRRLLTVEQRAQEPNVMYPVWELVNAAEKGGKPEEAAAWRRYGRETLNLAMA---------------------------GRLKE-------------------------AEQLLRRALTIEEARLGEDDPRVARTLFHLGVCLR 409          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.000e-69
Identity = 172/495 (34.75%), Postives = 231/495 (46.67%), Query Frame = -2
Query:   55 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGD-PLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQALEPDVMYPLWE---LVSVAEKKGNPEEASVWRQYGYETLNLAMVRSSMVSGGEAGVGEAGGXXXXXXXXGGGRLKDTTDTAAVIQSLTLNMVRFGPSEGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVRKAGRL 1527
            CGR+A+D++FVGRWSTVRG  D  AW DAA  +RA+++   +T E                                                                           D+R NRR+A+L+AGF DL +G+ D+RV+ LYL+LAVLPDGH FTVKDAAVLL  R                         E    +E     ++E LE W I+            A+YRMH AHS FARE L++  ++ R A++  V  +SSL+A+       L  LW  V+ VGG  W   RPYE AL  +D  + PL R  + AVA F++A+ DW GA+  WRRLL+VE+  L  D  Y L     L   AE + N EEA  W +  ++ L LAM R+     G    G                     D A  + SL   ++   P E  +AEM+LRR+LEI++A    DD++VA     LGVC+R+AGRL
Sbjct:  407 CGRVAMDLAFVGRWSTVRGRQDRTAWSDAACKVRAEMDKGGVTAESNGSE----------------------------------------------------------------------DSRVNRRRAILQAGFEDLAIGSDDERVQRLYLSLAVLPDGHAFTVKDAAVLLYDR-------------------------EPGTEDEASVGGVVEALERWTIIRSVE--------ATYRMHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYVLNTYHCLARCAEHQDNVEEAKEWHRKQHQALPLAMARAQSKHVGSEAAG--------------------LDDAGSLASLAATVITLHPGERGEAEMLLRRSLEIKMAELDQDDVQVAVVQHDLGVCIREAGRL 778          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 1.060e-68
Identity = 170/498 (34.14%), Postives = 239/498 (47.99%), Query Frame = -2
Query:   46 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQAL---EPDVMYPLWELVSVAEKKGNPEEASVWRQYGYETLNLAMVR-SSMVSGGEAGVGEAGGXXXXXXXXGGGRLKDTTDTAAVIQSLTLNMVRFGPSEGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVRKAGRLREA 1527
            CGR+A+D++FVGRWSTVRG +DP +W DAA TIR ++E +    +                                                                                RRKA+L+ GF DL +G+ D+RV+ LYL+LAV+PDGH F++KDAAVLL  R                       ++ED    E  A  +++ LE W+I+  A G        +YRMH AH+ FARE LL+   + R A++ W  ++SSLD +   +  VL  LW A+E +GG  W   RPYE ALG +   D L R    AV  F++A+ D EGAS  WRRLL VE++ L    P V+     L   AE+ GN EEA+ W +   E L LA+ R +++V  G                     L+   D A  + S+    + F P + A AE +LRR+L+++ A  GP+ ++VA TL++LGV  R+AGRL EA
Sbjct:  384 CGRVAMDVAFVGRWSTVRGRHDPASWSDAASTIRTEMEKVGHDPDNDSAENIPA----------------------------------------------------------------------KRRKAILQGGFEDLAIGSDDERVQRLYLSLAVMPDGHAFSLKDAAVLLYDRSP---------------------STED----EASAGGVVDVLERWSIIRSAQG--------TYRMHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEKEVEGLPLALARMNALVRSG---------------------LEADLDDADSLSSVAATALEFRPGDRALAETLLRRSLDVKEAILGPEHLQVADTLRQLGVSAREAGRLDEA 757          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 8.310e-67
Identity = 168/499 (33.67%), Postives = 231/499 (46.29%), Query Frame = -2
Query:   46 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFE-PLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQAL---EPDVMYPLWELVSVAEKKGNPEEASVWRQYGYETLNLAMVRSSM-VSGGEAGVGEAGGXXXXXXXXGGGRLKDTTDTAAVIQSLTLNMVRFGPSEGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVRKAGRLREA 1527
            CGR+A+D++FVGRWSTVRG +D  AW DAA  +R+ +E   ++                                                                             D R  RRKAVL+AGF DL +G+ D+R+  LYL+LAVLPDGH FT KDA  LL                       DR    +   +E    +L+ TLE W+ L   GG        +YRMH AHSGFAR+ +++   + + AV+ W   +SSLD +  F+ P VL  LW AV  +GG SWR+ RPY AAL E+D  +PL    L ++  F+DA+ DW+ AS   RR+L+V+++ L    P  +  L  LV  AE+ GN EE + W+      L LA+VR  + +  GE                      D  D A  + S+   M+   P +   AE ++R +LEI+  + G DD+ VA  L  LGV V  AGRL EA
Sbjct:  386 CGRVAMDVAFVGRWSTVRGRSDRTAWSDAAHKVRSKIERSRVSDNVW-------------------------------------------------------------------------DIRAVRRKAVLQAGFEDLAIGSDDERIPRLYLSLAVLPDGHAFTAKDATALL----------------------YDRAPCPE---DEVSTEELIRTLERWSALRTEGG--------AYRMHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHPHTILTLRALVYCAERLGNAEEMTEWQAELRRVLPLAVVRMQLRLDAGEV---------------------DGVDDANALNSIASTMLNLAPDDRGNAEALMRHSLEIQEVKLGRDDVYVAYNLHHLGVSVHLAGRLDEA 757          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.010e-65
Identity = 171/500 (34.20%), Postives = 233/500 (46.60%), Query Frame = -2
Query:   49 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDN-GDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQALEPD---VMYPLWELVSVAEKKGNPEEASVWRQYGYETLNLAMVR-SSMVSGGEAGVGEAGGXXXXXXXXGGGRLKDTTDTAAVIQSLTLNMVRFGPS--EGAKAEMMLRRALEIEVARRGPDDMRVAATLQRLGVCVRKAGRLRE 1527
            CGR+A+D++FVGRWSTVRG  D +AW DA   +R ++  +                                                                               RDAR   RKA+LRAGF DL +G+ D+RV+ LYL+LAV PDGH FTV+DAAVLL  R                         E    +E     +++TLE W +L    G        +YRMH AHS FARE L++   + R AV+ WV  +S L+ +   +P VL  LW AVE VGG  W   R Y AAL  +D     L R  ++A+A+ ++A  DWEGAS  WRRLL +E++ L  D   V+     L S AE+ G   EA+ WR    E L LA+ R  S    G+                      +  D A  + S+   M++F P   + A+AE++LRR+LEI+ A  G +D+ VA TL +LG+C+R+AGRL E
Sbjct:  240 CGRVAMDLAFVGRWSTVRGRQDRMAWSDAVSKVREEMGKV-------------------------------------------------------------------GSGDASEKLAETRDAR---RKAILRAGFEDLAIGSDDERVQRLYLSLAVFPDGHAFTVRDAAVLLYDR-------------------------EPCAEDEASVAVVVDTLERWTVLRSEQG--------AYRMHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLASCAEQLGQVGEAADWRGKEVEALPLALARVQSQTDSGKV---------------------EGLDGANGLASVASTMLKFKPGSIDRAQAEVLLRRSLEIQEAALGHEDIAVADTLYQLGICLREAGRLEE 615          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 3.920e-28
Identity = 110/391 (28.13%), Postives = 150/391 (38.36%), Query Frame = -2
Query:  379 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLE------NLELTQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEADWEGASVMWRRLLSVEQQAL--EPDVMYPLWELVSVAEKKGNPEEASVWRQ 1527
            C RMA  + FVGRWSTV+GS+D   W +A   I A++       N + + E                                                                           D  G +R A+LRAGF DL    G + +  LYL+LAV+PDG  F  K+AAV L                       + R S+ R    R A K++  LE W ++   G          +RMH AHS FAR  L    ++   A+R W GF S LD +   +   +  LW A E +GG SWR  RPY  AL  + +  P C   L AV +F   E  WE    +  RLL V++ A     +V + L  L+  A       +A   R+
Sbjct:  449 CDRMANRLEFVGRWSTVKGSDDEEDWAEAVSAIDAEMSAMAGEANAQKSDE---------------------------------------------------------------------------DLSGVKRVAILRAGFLDLAAQNGFNPL--LYLSLAVMPDGRAFGAKEAAVFL------------------FDDWAEERASQRR---TRQAAKVVANLEQWAVVTMHGNL--------FRMHDAHSDFARNKLKRSEDVRASALRRWRGFTSRLDTIRSMDYFEMVDLWHATEMIGGESWRVSRPYHVALDSLRDSSPECIPSLKAVVEFGINECAWEVTHDVALRLLRVQKDAAVEHAEVRHTLESLIHCANALNLNSDADAHRR 733          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5KQ93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ93_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.640e-20
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = -2
Query:  700 RRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLECHEILRCAVREWVGFVSSLDAV 1152
            RRKA+L+ GF D  + + D+RV+  YL+LAV+PDGH F++KDAAVLL                       DR  S +   +E  A  +++ LE W+I+ PA G        +YRMH AH+ FARE LL+   + R A++ W  ++SSLD +
Sbjct:   51 RRKAILQGGFEDRAIESDDERVQRFYLSLAVMPDGHAFSLKDAAVLL----------------------DDRPPSTE---DEASAGGVVDVLERWSIIRPAQG--------TYRMHDAHTYFARECLLDRGHVRRPALKRWTRYISSLDVL 168          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5KU40_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU40_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.860e-14
Identity = 68/220 (30.91%), Postives = 98/220 (44.55%), Query Frame = -2
Query:  523 ARGNRRKAVLRAGFRDLVVGTGDDRVRYLYLALAVLPDGHEFTVKDAAVLLRGRGQHGGXXXXXXXXXXXXXXXDRRNSEDRRGEERIARKLLETLEAWNILAPAGGRGADRGIASYRMHCAHSGFAREVLLEC------HEILRCAVREWVGFVSSLDAVLFFEPLVLARLWRAVEDVGGPSWRDRRPYEAALGEIDNGDPLCRLCLVAVAKFRDAEAD 1164
            A   RR  + R G++D   G+GD R + LYL+L +LP+G+ F V DA++LL G  Q                  D  N+ D          ++  LE W ++      G      +YRMH AHS FAR++L          ++   AVR W   +S L  VL  +  +L  LW+AV+ V        R Y A L  ID+ D +       +A+   AE D
Sbjct:  442 AASKRRDVIFRVGYKDF--GSGDVRNKILYLSLGILPNGYAFRVSDASLLLFGACQ----------------GRDMENAGD----------VVADLERWAVVRLESSDG------TYRMHDAHSEFARKILTSALGLGFAADVRELAVRRWSAHLSCLKTVLSLDVGLLLSLWQAVDTVSCDVGIRVRSYRAQLCSIDSSDEVYFSFAKTIAQLYYAEGD 627          
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 7.450e-7
Identity = 25/41 (60.98%), Postives = 34/41 (82.93%), Query Frame = -2
Query: 1405 CGRMALDISFVGRWSTVRGSNDPVAWQDAADTIRADLENLE 1527
            CGR+A+D++FVGRWSTVRG +D VAW DAA  +RA++  +E
Sbjct:  305 CGRVAMDLAFVGRWSTVRGRHDRVAWSDAAAKVRAEIAKIE 345          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5615.13949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L0N2_9PHAE9.600e-14061.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJY3_ECTSI4.540e-10658.03Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ect... [more]
A0A6H5KRK8_9PHAE3.000e-6934.75NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZW8_ECTSI1.060e-6834.14NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KLK9_9PHAE8.310e-6733.67NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KYW3_9PHAE1.010e-6534.20NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D8LFN6_ECTSI3.920e-2828.13NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KQ93_9PHAE1.640e-2039.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU40_9PHAE2.860e-1430.91NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5J759_9PHAE7.450e-760.98NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5615contigL-elsbetiae_contig5615:903..2430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1530
Cds size1248
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.5250964-CDS-L-elsbetiae_contig5615:902..21501622816596.5250964-CDS-L-elsbetiae_contig5615:902..2150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5615 903..2150 +
1691683673.2770154-CDS-L-elsbetiae_contig5615:902..21501691683673.2770154-CDS-L-elsbetiae_contig5615:902..2150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5615 903..2150 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.535976-UTR-L-elsbetiae_contig5615:2150..24301622816596.535976-UTR-L-elsbetiae_contig5615:2150..2430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5615 2151..2430 +
1691683673.2868626-UTR-L-elsbetiae_contig5615:2150..24301691683673.2868626-UTR-L-elsbetiae_contig5615:2150..2430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5615 2151..2430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5615.13949.1prot_L-elsbetiae_contig5615.13949.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5615 903..2150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5615.13949.1

>prot_L-elsbetiae_contig5615.13949.1 ID=prot_L-elsbetiae_contig5615.13949.1|Name=mRNA_L-elsbetiae_contig5615.13949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=416bp
QFGLLDLEGSLQHHLGLPQPPCLPDAHAEPLQGRGHPHVVGPPPRHLDLQ
RPPQHHLGLSALGRPEPHHVEGEGLDHGGRVGGVLQPAAAAAGAGAVAAP
GFADPGFAPRNHGRSDHGQVESLVAVLAPHRGLLRVALLLRDADQLPQGI
HHVRLQGLLLHRQKAAPHHGRPLPVRLRIPKLGHRHEAQAAERISVVDLA
ESRLVRPPIAPARPAHVLDRPPQPGEHQRLEKQHGIQRRDEADPLPHGAP
EYFVALQEYLPREPRVGAVHAVRGYAPVRPPSTGWGKDVPGFESLEQLPG
DPLLSSPVLAVSPVCPYPAAAAAAAAACSSAVLASSAQQHGRVLHRELVA
IRQHRQGEVEIAHAVVACADDEISEPRAEDCLPSVPPSVATPGVRRRRQR
RRQCRRGVRRSGVDA*
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mRNA from alignment at L-elsbetiae_contig5615:903..2430+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5615.13949.1 ID=mRNA_L-elsbetiae_contig5615.13949.1|Name=mRNA_L-elsbetiae_contig5615.13949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1528bp|location=Sequence derived from alignment at L-elsbetiae_contig5615:903..2430+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTTGGCCTCCTCGATCTTGAGGGCTCGCTGCAGCATCATCTCGGCCT CCCTCAGCCGCCCTGCCTTCCGGACGCACACGCCGAGCCGCTGCAGGGTC GCGGCCACCCGCATGTCGTCGGGCCCCCTCCTCGCCACCTCGATCTCCAA CGCCCTCCGCAGCATCATCTCGGCCTTAGCGCCCTCGGAAGGCCCGAACC GCACCATGTTGAGGGTGAGGGATTGGATCACGGCGGCCGTGTCGGTGGTG TCCTTCAGCCTGCCGCCGCCGCCGCCGGTGCCGGGGCCGTCGCCGCCCCC GGCTTCGCCGACCCCGGCTTCGCCCCCCGAAACCATGGACGATCTGACCA TGGCCAGGTTGAGAGTCTCGTAGCCGTACTGGCGCCACACCGAGGCCTCC TCCGGGTTGCCCTTCTTCTCCGCGACGCTGACCAGCTCCCACAGGGGATA CATCACGTCCGGCTCCAGGGCCTGCTGCTCCACCGACAGAAGGCGGCGCC ACATCACGGACGCCCCCTCCCAGTCCGCCTCCGCATCCCGAAACTTGGCC ACCGCCACGAGGCACAAGCGGCAGAGCGGATCTCCGTTGTCGATCTCGCC GAGAGCCGCCTCGTACGGCCGCCGATCGCGCCAGCTCGGCCCGCCCACGT CCTCGACCGCCCGCCACAGCCGGGCGAGCACCAGCGGCTCGAAAAACAGC ACGGCATCCAGCGAAGAGACGAAGCCGACCCACTCCCTCACGGCGCACCG GAGTATTTCGTGGCACTCCAGGAGTACCTCCCTCGCGAACCCCGAGTGGG CGCAGTGCATGCGGTACGAGGCTATGCCCCTGTCCGCCCCCCGTCCACCG GCTGGGGCAAGGATGTTCCAGGCTTCGAGAGTCTCGAGCAGCTTCCGGGC GATCCTCTCCTCTCCTCTCCTGTCCTCGCTGTTTCGCCGGTCTGCCCCTA CCCCGCCGCCGCCGCTGCTGCCGCCGCCGCCTGCTCCTCCGCCGTGCTGG CCTCTTCCGCGCAGCAGCACGGCCGCGTCCTTCACCGTGAACTCGTGGCC ATCCGGCAGCACCGCCAGGGCGAGGTAGAGATAGCGCACGCGGTCGTCGC CTGTGCCGACGACGAGATCTCGGAACCCCGCGCGGAGGACTGCCTTCCGT CGGTTCCCCCGAGCGTCGCGACGCCGGGCGTACGACGACGACGACAACGA CGACGACAGTGCCGGAGGGGGGTGCGAAGAAGCGGCGTCGATGCTTGAAA CAGAGGCCGTCGCTCCGTCATCGTACGTCCAACTAGAGGCCGTGGAGTAC TGGTGCAGCAGCGGCGGACCCTCTCGGCGCCGGTCACCACCGGCGTTGCC GCCGCCGCCGCCGTCGCCGCCGCGCGCGTCCTCCTCATCCTCCTCCTGCG TTAGCTCCAGGTTCTCCAGGTCCGCGCGGATGGTGTCGGCGGCGTCCTGC CACGCCACGGGGTCGTTGCTGCCGCGAACGGTGCTCCACCTGCCCACGAA CGAGATATCCAGCGCCATTCGGCCGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5615:903..2430+

>mRNA_L-elsbetiae_contig5615.13949.1 ID=mRNA_L-elsbetiae_contig5615.13949.1|Name=mRNA_L-elsbetiae_contig5615.13949.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2496bp|location=Sequence derived from alignment at L-elsbetiae_contig5615:903..2430+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTTTGGCCTCCTCGATCTTGAGGGCTCGCTGCAGCATCATCTCGGCCT
CCCTCAGCCGCCCTGCCTTCCGGACGCACACGCCGAGCCGCTGCAGGGTC
GCGGCCACCCGCATGTCGTCGGGCCCCCTCCTCGCCACCTCGATCTCCAA
CGCCCTCCGCAGCATCATCTCGGCCTTAGCGCCCTCGGAAGGCCCGAACC
GCACCATGTTGAGGGTGAGGGATTGGATCACGGCGGCCGTGTCGGTGGTG
TCCTTCAGCCTGCCGCCGCCGCCGCCGGTGCCGGGGCCGTCGCCGCCCCC
GGCTTCGCCGACCCCGGCTTCGCCCCCCGAAACCATGGACGATCTGACCA
TGGCCAGGTTGAGAGTCTCGTAGCCGTACTGGCGCCACACCGAGGCCTCC
TCCGGGTTGCCCTTCTTCTCCGCGACGCTGACCAGCTCCCACAGGGGATA
CATCACGTCCGGCTCCAGGGCCTGCTGCTCCACCGACAGAAGGCGGCGCC
ACATCACGGACGCCCCCTCCCAGTCCGCCTCCGCATCCCGAAACTTGGCC
ACCGCCACGAGGCACAAGCGGCAGAGCGGATCTCCGTTGTCGATCTCGCC
GAGAGCCGCCTCGTACGGCCGCCGATCGCGCCAGCTCGGCCCGCCCACGT
CCTCGACCGCCCGCCACAGCCGGGCGAGCACCAGCGGCTCGAAAAACAGC
ACGGCATCCAGCGAAGAGACGAAGCCGACCCACTCCCTCACGGCGCACCG
GAGTATTTCGTGGCACTCCAGGAGTACCTCCCTCGCGAACCCCGAGTGGG
CGCAGTGCATGCGGTACGAGGCTATGCCCCTGTCCGCCCCCCGTCCACCG
GCTGGGGCAAGGATGTTCCAGGCTTCGAGAGTCTCGAGCAGCTTCCGGGC
GATCCTCTCCTCTCCTCTCCTGTCCTCGCTGTTTCGCCGGTCTGCCCCTA
CCCCGCCGCCGCCGCTGCTGCCGCCGCCGCCTGCTCCTCCGCCGTGCTGG
CCTCTTCCGCGCAGCAGCACGGCCGCGTCCTTCACCGTGAACTCGTGGCC
ATCCGGCAGCACCGCCAGGGCGAGGTAGAGATAGCGCACGCGGTCGTCGC
CTGTGCCGACGACGAGATCTCGGAACCCCGCGCGGAGGACTGCCTTCCGT
CGGTTCCCCCGAGCGTCGCGACGCCGGGCGTACGACGACGACGACAACGA
CGACGACAGTGCCGGAGGGGGGTGCGAAGAAGCGGCGTCGATGCTTGACA
GTTTGGCCTCCTCGATCTTGAGGGCTCGCTGCAGCATCATCTCGGCCTCC
CTCAGCCGCCCTGCCTTCCGGACGCACACGCCGAGCCGCTGCAGGGTCGC
GGCCACCCGCATGTCGTCGGGCCCCCTCCTCGCCACCTCGATCTCCAACG
CCCTCCGCAGCATCATCTCGGCCTTAGCGCCCTCGGAAGGCCCGAACCGC
ACCATGTTGAGGGTGAGGGATTGGATCACGGCGGCCGTGTCGGTGGTGTC
CTTCAGCCTGCCGCCGCCGCCGCCGGTGCCGGGGCCGTCGCCGCCCCCGG
CTTCGCCGACCCCGGCTTCGCCCCCCGAAACCATGGACGATCTGACCATG
GCCAGGTTGAGAGTCTCGTAGCCGTACTGGCGCCACACCGAGGCCTCCTC
CGGGTTGCCCTTCTTCTCCGCGACGCTGACCAGCTCCCACAGGGGATACA
TCACGTCCGGCTCCAGGGCCTGCTGCTCCACCGACAGAAGGCGGCGCCAC
ATCACGGACGCCCCCTCCCAGTCCGCCTCCGCATCCCGAAACTTGGCCAC
CGCCACGAGGCACAAGCGGCAGAGCGGATCTCCGTTGTCGATCTCGCCGA
GAGCCGCCTCGTACGGCCGCCGATCGCGCCAGCTCGGCCCGCCCACGTCC
TCGACCGCCCGCCACAGCCGGGCGAGCACCAGCGGCTCGAAAAACAGCAC
GGCATCCAGCGAAGAGACGAAGCCGACCCACTCCCTCACGGCGCACCGGA
GTATTTCGTGGCACTCCAGGAGTACCTCCCTCGCGAACCCCGAGTGGGCG
CAGTGCATGCGGTACGAGGCTATGCCCCTGTCCGCCCCCCGTCCACCGGC
TGGGGCAAGGATGTTCCAGGCTTCGAGAGTCTCGAGCAGCTTCCGGGCGA
TCCTCTCCTCTCCTCTCCTGTCCTCGCTGTTTCGCCGGTCTGCCCCTACC
CCGCCGCCGCCGCTGCTGCCGCCGCCGCCTGCTCCTCCGCCGTGCTGGCC
TCTTCCGCGCAGCAGCACGGCCGCGTCCTTCACCGTGAACTCGTGGCCAT
CCGGCAGCACCGCCAGGGCGAGGTAGAGATAGCGCACGCGGTCGTCGCCT
GTGCCGACGACGAGATCTCGGAACCCCGCGCGGAGGACTGCCTTCCGTCG
GTTCCCCCGAGCGTCGCGACGCCGGGCGTACGACGACGACGACAACGACG
ACGACAGTGCCGGAGGGGGGTGCGAAGAAGCGGCGTCGATGCTTGA
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