mRNA_L-elsbetiae_contig561.13944.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig561.13944.1
Unique NamemRNA_L-elsbetiae_contig561.13944.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig561.13944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig561contigL-elsbetiae_contig561:16446..18032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size185
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816596.0899007-CDS-L-elsbetiae_contig561:16445..165931622816596.0899007-CDS-L-elsbetiae_contig561:16445..16593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig561 16446..16593 +
1691683672.998181-CDS-L-elsbetiae_contig561:16445..165931691683672.998181-CDS-L-elsbetiae_contig561:16445..16593Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig561 16446..16593 +
1622816596.1032476-CDS-L-elsbetiae_contig561:17997..180321622816596.1032476-CDS-L-elsbetiae_contig561:17997..18032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig561 17998..18032 +
1691683673.0105867-CDS-L-elsbetiae_contig561:17997..180321691683673.0105867-CDS-L-elsbetiae_contig561:17997..18032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig561 17998..18032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig561.13944.1prot_L-elsbetiae_contig561.13944.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig561 16446..18032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig561.13944.1

>prot_L-elsbetiae_contig561.13944.1 ID=prot_L-elsbetiae_contig561.13944.1|Name=mRNA_L-elsbetiae_contig561.13944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MPPQVGSGRASSAVLEEQEGPFCATTRAPYVVTWSCWFGAWTWIIRCPQG
RDKQQRVGGGA
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mRNA from alignment at L-elsbetiae_contig561:16446..18032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig561.13944.1 ID=mRNA_L-elsbetiae_contig561.13944.1|Name=mRNA_L-elsbetiae_contig561.13944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1587bp|location=Sequence derived from alignment at L-elsbetiae_contig561:16446..18032+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCTCAGGTCGGGTCGGGCAGGGCGTCCAGTGCAGTGCTTGAGGA
ACAGGAGGGTCCTTTCTGTGCGACGACTCGCGCACCTTACGTTGTTACTT
GGTCTTGCTGGTTCGGTGCCTGGACCTGGATTATACGTTGTCCCCAAGGT
AAAAATACCGCGAGGTGCCTCGTTTTTAAAATTTGAGTTTTGCTGTCTGT
CTCTCTCACCTCCACAGCGTGGTTTGTTATCCTGCTGCCGGTGGTGCTGG
GGTGTATGCACACTGATTGAGCTATTGGTGTTGCCACTGTTGACGTTTCT
GCTTCCTATTGCCTTTTGGTTCAGCATCAGACCTCCTTCCATATCTACAT
CAAAGACAGGCCTAACGGCCCTGCCTGCCTGTCTGTGCGCACGCCTGCTG
CAGCTGCGGTGTGTGCTTTGAAAATCCAATTTCACTGTGATACGAAGTAT
TTTTCCAAGCCCAGCCAACGATAGAGGTGGTGAACCTCTCTGGTCTACAG
ATGCCCTGCGTGATATTCAACCGGCAGTCGTTCTCTATTGTAGTGCACCC
GAAAGTGTGTGACAGCCGATTTTTTTTAACTCGAGGTGGAGGTAGACATG
TTATCAGACCGTGGAAAAAAATGATCGTCGTCGTGCGTCGTGCGGCAAAA
AGCTCGCCACCATTTTTTCATTGATTTGTTTCTGTATCCACATCAATACA
GTAGTTGTCCCTTGTACGAGACTCAAATTGGTGCGGTTGAATATCACAAG
TTGATTCGATGCCAATGTAAACGTCTTGGGACGCTGGGCGTTGTGCTTGG
ACCGGCGATAACCTGGCCCCGCAAATCTTGTTGCTGCTGCTGTCTTGTAG
GGCGGGAGAAAATGGGGAATTGGCTTTTTTGGCGATTGAGAGAGCAGGAA
ATAGAGGAGGCGAGAGAAGGGGGGGGGGGGGGGGGGGGGGGGCAAAAAAA
AAATTGGGGACCAAAGGGAGCCGTGGAGCGGGGGGGGCGGGCGGTGTGGG
GGGGGGGAAAAANNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGTGTTGG
GTGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGTGCTGGCCAAGAAGAATTTGTGGTACACAGCAGTCTC
GTGATGCGTGTCGAGGAGTTGTCGTTGAGAGCGAAGAAACAGCACCCACC
ATGCCATGTACATCCGCCTTTTTGTCTCACTTTTGCACGAAAAAAAGTGG
CCACCACCCATCTGTAGATACCGTGGATGACACAAGAAACCACATCCCCT
GGACCGACTTTTAGAGCTCCATTACTCCGTAACGAAGAGGGTGCCGGTGC
CGGAAGGGGAGGCGTTGAAAATATTTAAATAGTCGAGGGCTGTCCGAAAA
TGTGTCGTTTGGTGCCTGGCACGGTCTTCGTTAGGGAGCAATGGAGCTCT
AAAATTCGGTCCAGGGGGTGTGGTATCTTGTGTCGCCTACGGCATATCTA
GTCTACAACGTTTCGATTTGTCCGTAATTGTTGCCGTGTGCACTTTTTCC
AGGCCGGGACAAACAACAAAGGGTAGGAGGAGGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig561:16446..18032+

>mRNA_L-elsbetiae_contig561.13944.1 ID=mRNA_L-elsbetiae_contig561.13944.1|Name=mRNA_L-elsbetiae_contig561.13944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig561:16446..18032+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCCCTCAGGTCGGGTCGGGCAGGGCGTCCAGTGCAGTGCTTGAGGA
ACAGGAGGGTCCTTTCTGTGCGACGACTCGCGCACCTTACGTTGTTACTT
GGTCTTGCTGGTTCGGTGCCTGGACCTGGATTATACGTTGTCCCCAAGAT
GCCCCCTCAGGTCGGGTCGGGCAGGGCGTCCAGTGCAGTGCTTGAGGAAC
AGGAGGGTCCTTTCTGTGCGACGACTCGCGCACCTTACGTTGTTACTTGG
TCTTGCTGGTTCGGTGCCTGGACCTGGATTATACGTTGTCCCCAAGGCCG
GGACAAACAACAAAGGGTAGGAGGAGGTGCCGCCGGGACAAACAACAAAG
GGTAGGAGGAGGTGCC
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