mRNA_L-elsbetiae_contig5605.13939.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5605.13939.1
Unique NamemRNA_L-elsbetiae_contig5605.13939.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.790e-34
Identity = 97/192 (50.52%), Postives = 110/192 (57.29%), Query Frame = 3
Query:  189 LHASSLDMVRRPTPVVTAFSSC-VGFPTAAVHKLSSLRCVLIQGHGDIVDMLLATKCNKDAADKDGTNALMAAASNGHLEAATSLVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGEEGAEDASKMEL 761
            +HAS   M +    ++ A +S  V    A+   ++ L    ++GH DIVDML+  KCN                                              FAYNGRAQVASLMDKYAEYLDDADDASGEST MMREAMAHTQSIIDLLLTSGAD SLKD EGR AKDFDYQPPAE  +   DA+KMEL
Sbjct:  667 VHASHAKMPKVVKALLEAPASAGVDKDAASDEGVTPLIAAAMKGHVDIVDMLIGAKCNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAYNGRAQVASLMDKYAEYLDDADDASGESTNMMREAMAHTQSIIDLLLTSGADASLKDKEGRTAKDFDYQPPAE--DAGADATKMEL 856          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A7S3GQ79_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQ79_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.030e-19
Identity = 59/134 (44.03%), Postives = 86/134 (64.18%), Query Frame = 3
Query:  324 DIVDMLLATKC-NKDAADKDGTNALMAAASNGHLEAATSLVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAE 722
            +IV++LLAT+  + DA DKD                   L+  GA +D QN DGH+ALMFAYNG+ QV +L+DKY++YL D +D    STK++R+A+     ++ LL+ SGA+ +++D EG +A DFDY+ PAE
Sbjct:  253 EIVELLLATQLIDIDAKDKDXXXXXXXXXXXXXXXXXAQLILKGANVDAQNVDGHTALMFAYNGKNQVETLLDKYSDYLRDVND---NSTKLIRDALETHVEVVHLLIRSGANVAIQDNEGHIASDFDYKSPAE 383          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.190e-18
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  459 LDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPA-EGEEGAE 740
            LD QN DGH+ALMFAYNG++QVA+L+DKY EY+ D +D    +T +++EA+     +++LLL  GA+P +KD EG  A DFDY PPA E E+GAE
Sbjct:  747 LDAQNDDGHTALMFAYNGKSQVATLLDKYTEYIKDEND---NNTALIKEALTTHTKVVNLLLEGGANPDVKDKEGHTAIDFDYVPPAAETEQGAE 838          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A6U4F0Y7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0Y7_9STRA)

HSP 1 Score: 100 bits (250), Expect = 2.880e-18
Identity = 54/104 (51.92%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  450 GAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGEEGAEDASKMEL 761
            GA LD QN DGH+ALMFAYNG++QVASL+DKY EY+ D +D    +T ++REA+     ++++LL  GA+P +KD EG  A DFD+ P A  EEG   A   EL
Sbjct:  745 GADLDAQNVDGHTALMFAYNGKSQVASLLDKYTEYVQDEND---NNTALIREALTTHTKVVNVLLEGGANPDVKDKEGHTAIDFDFVPAAPTEEGEAAAGGDEL 845          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A7S1GGD5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGD5_CYCTE)

HSP 1 Score: 96.7 bits (239), Expect = 2.180e-17
Identity = 58/162 (35.80%), Postives = 96/162 (59.26%), Query Frame = 3
Query:  312 QGHGDIVDMLLATK-CNKDAADKDGTNALMAAASNGHLEAATSLVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDAD---DASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGE--------EGAEDASKMEL 761
            +GH ++V +L+  K  + +A DKD                    +KAGA++++QNSDGH+ALMFA+NG+ QV +L ++Y++Y+ D +   +  G +  ++REA+ +  ++++LL+ +GAD +LKD EG  AKDFD+ P  + +        E   D SK EL
Sbjct:  315 EGHQEVVQLLVENKNIDVNAKDKDXXXXXXXXXXXXXXXXXXXXLKAGASVNEQNSDGHTALMFAFNGKNQVETLWERYSQYVKDDEKDKEDDGGTGPIIREALDNHTALVELLIKNGADETLKDKEGHTAKDFDFHPETDADVLKRETQAEKVRDESKNEL 476          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: W7T4W4_9STRA (Ankyrin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4W4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.340e-16
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  438 LVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAM-AHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGEEGAEDAS 749
            L+K GA ++ QNSDGH+AL FAYNG  QVASL+DKY EY+   +D    +TK+++EA+  HTQ ++DLL  SGAD +LKD EG  A DF Y+  + GE  AE+A+
Sbjct:  759 LLKHGAEVNAQNSDGHTALFFAYNGLNQVASLLDKYGEYVQGEND---NNTKIIKEALETHTQ-VVDLLKLSGADENLKDKEGHTAADFGYKRVSSGE--AEEAA 857          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A6U3Q8H2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8H2_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.360e-15
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 3
Query:  312 QGHGDIVDMLL-ATKCNKDAADKDGTNALMAAASNGHLEAATSLVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDA---DDASGESTK---------MMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGE 728
            +GH ++V +L+   K + DA DKD TN+                + AGA +++QN DGH+ALMFAYNG+ QV +L ++Y +++++A       GES +         ++REA+ +  ++++LLL +GAD  LKD EG  A DFD+ P A+ +
Sbjct:  749 EGHVEVVKLLIDEAKADVDAKDKDETNSXXXXXXXXXXXXXXXXLAAGAKVNEQNVDGHTALMFAYNGKNQVETLWERYNQFVNEAKAEQTDKGESEEEIDDGGTGPIIREALDNHTALVELLLKNGADEKLKDKEGHTAADFDFHPDADAD 900          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A7S2UKR6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKR6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.180e-14
Identity = 51/120 (42.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:  441 VKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDAS-----GESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGE--------EGAEDASKMEL 761
            +KAGA++++QN DGH+ALMFAYNG+ QV +L ++Y +++ D+  +      G +  +++EA+ +  +++DLLL SGAD +LKD EG  A DFD+ P A+ E        E   D SK EL
Sbjct:  526 LKAGASVNEQNIDGHTALMFAYNGKNQVETLWERYHQFVRDSSASEEKVDDGGTGPIIQEALDNHTALVDLLLKSGADATLKDKEGHTAGDFDFNPDADAEVLDQEEKAEKKRDESKNEL 645          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A1E7F291_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F291_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.040e-14
Identity = 47/112 (41.96%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  477 DGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTK---------MMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGE--------EGAEDASKMEL 761
            DGH+ALMFAYNG+ QV +L ++Y +++D+A   +GES +          ++EA+ +  +++DLL+ SGAD SLKD EG  A DFD+ P  + E        E  +D SK EL
Sbjct:    2 DGHTALMFAYNGKNQVETLWERYNQFVDEAK-TNGESKEDVDDNDTGPTIQEALKNHTALVDLLIKSGADQSLKDKEGHAANDFDFHPDTDAEILAKEARAEKVKDESKNEL 112          
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Match: A0A6H5KZC7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZC7_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 6.620e-14
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  438 LVKAGAALDKQNSDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQSIIDLLLTSGADPSLKDTEGRMAKDFDYQPPA--EGEEGAEDASKME 758
            L++ GA +D+QN DGH+ALMFAYNGR QVA+L+ +Y EY+   +D    + K++++++    +II  L  +GADP L DT G  A+DF+ Q PA  E E GA  A ++E
Sbjct:  824 LLRHGANVDQQNLDGHTALMFAYNGRNQVAALLSRYLEYVGGKEDDG--NAKIIQDSLQVHTNIIAALQAAGADPGLLDTNGNSAQDFESQHPAGHETEGGASGAGRLE 930          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5605.13939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KMP7_9PHAE4.790e-3450.52Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A7S3GQ79_9STRA1.030e-1944.03Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7R9U5G3_9STRA2.190e-1854.74Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U4F0Y7_9STRA2.880e-1851.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1GGD5_CYCTE2.180e-1735.80Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7T4W4_9STRA4.340e-1653.33Ankyrin n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
A0A6U3Q8H2_9STRA1.360e-1536.84Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2UKR6_9STRA1.180e-1442.50Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1E7F291_9STRA2.040e-1441.96Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A6H5KZC7_9PHAE6.620e-1445.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5605contigL-elsbetiae_contig5605:5548..10066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue2e-34
Seed eggNOG ortholog2880.D7FMW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2128
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5605.13939.1prot_L-elsbetiae_contig5605.13939.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5605 5721..8702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.2889328-UTR-L-elsbetiae_contig5605:5547..57201622816595.2889328-UTR-L-elsbetiae_contig5605:5547..5720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 5548..5720 +
1691683672.5532815-UTR-L-elsbetiae_contig5605:5547..57201691683672.5532815-UTR-L-elsbetiae_contig5605:5547..5720Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 5548..5720 +
1622816595.3469667-UTR-L-elsbetiae_contig5605:8702..100661622816595.3469667-UTR-L-elsbetiae_contig5605:8702..10066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 8703..10066 +
1691683672.6094136-UTR-L-elsbetiae_contig5605:8702..100661691683672.6094136-UTR-L-elsbetiae_contig5605:8702..10066Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 8703..10066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.3008175-CDS-L-elsbetiae_contig5605:5720..59241622816595.3008175-CDS-L-elsbetiae_contig5605:5720..5924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 5721..5924 +
1691683672.5665169-CDS-L-elsbetiae_contig5605:5720..59241691683672.5665169-CDS-L-elsbetiae_contig5605:5720..5924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 5721..5924 +
1622816595.3131447-CDS-L-elsbetiae_contig5605:7188..73321622816595.3131447-CDS-L-elsbetiae_contig5605:7188..7332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 7189..7332 +
1691683672.577084-CDS-L-elsbetiae_contig5605:7188..73321691683672.577084-CDS-L-elsbetiae_contig5605:7188..7332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 7189..7332 +
1622816595.324967-CDS-L-elsbetiae_contig5605:7725..78271622816595.324967-CDS-L-elsbetiae_contig5605:7725..7827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 7726..7827 +
1691683672.5874956-CDS-L-elsbetiae_contig5605:7725..78271691683672.5874956-CDS-L-elsbetiae_contig5605:7725..7827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 7726..7827 +
1622816595.3353536-CDS-L-elsbetiae_contig5605:8561..87021622816595.3353536-CDS-L-elsbetiae_contig5605:8561..8702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 8562..8702 +
1691683672.599242-CDS-L-elsbetiae_contig5605:8561..87021691683672.599242-CDS-L-elsbetiae_contig5605:8561..8702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 8562..8702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5605.13939.1

>prot_L-elsbetiae_contig5605.13939.1 ID=prot_L-elsbetiae_contig5605.13939.1|Name=mRNA_L-elsbetiae_contig5605.13939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MFLDGLHASSLDMVRRPTPVVTAFSSCVGFPTAAVHKLSSLRCVLIQGHG
DIVDMLLATKCNKDAADKDGTNALMAAASNGHLEAATSLVKAGAALDKQN
SDGHSALMFAYNGRAQVASLMDKYAEYLDDADDASGESTKMMREAMAHTQ
SIIDLLLTSGADPSLKDTEGRMAKDFDYQPPAEGEEGAEDASKMEL*
back to top

mRNA from alignment at L-elsbetiae_contig5605:5548..10066+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5605.13939.1 ID=mRNA_L-elsbetiae_contig5605.13939.1|Name=mRNA_L-elsbetiae_contig5605.13939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4519bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:5548..10066+ (Laminarionema elsbetiae ELsaHSoW15)
CGTGAACATTTTTTTTCTTCCCATTATTGGCTCATGTATTCGACTTCTGC CCCGCTGGCCATTTCCTCCACTTACGACAGTGTGTACCTGGGTATTTAGT GGTTGGTTTGCCGTTGTTCGGCGTCAAGGCTTACAGGAATCGGCCATCCT TTGCTGGCCTCCCGTGCTTTTTGATGTTCTTGGATGGACTGCATGCGTCC AGTTTGGACATGGTCCGCCGGCCGACCCCCGTTGTCACAGCTTTCTCGTC TTGCGTTGGTTTTCCAACGGCTGCTGTTCACAAATTGTCTTCGCTGCGTT GTGTTTTGATTCAGGGGCACGGTGACATTGTGGACATGCTCTTGGCGACC AAGTGCAACAAGGACGCCGCAGATAAGGTACAGCGGCATGCGGGATGTAC GGGTTGACTTGTATTTGGCTCCGTTTTTTGGTTCGTCATCGAACTTCAGC TTGACGAACGAAAAAAGCTCTCTGTTCTTACACAGCAGTTAGGCCATTTC TTATACGAACAAAAAAGCTAACCGAAAAGTGTACATTCGCCCCGAGAACG CCCCTGTGCGCAAGATACGAGATTACTCATCAGCCAGCAGAAAATACCTG AGCAGCACCCAGTTCTCGGCTCCTAATTTAGGGCACCGATTGCAATCGCA GCACTTCAGGTGTGTGCTCCATGGTGGTATCTCTGGGTGTACCCATTGTG TGGGGCGTGGGCGTTGCATGTGGCGAGAGTTTTGTGGCGGAGTAGAGAAT CCGATCGAACTTTTCGACTGGGAATCGAATCGGATTTGTATACCTACTTT TTTTCGGTTCAAGTGAAACCAAAAAAGTTCGGGATCAGATTCTACTCCGA CACAAAGCTCTCGCCACACACAACGCCCATGCCCAACACGACTGGCACAC CCAGAGATATCACCATAGAGTACACGCCTAAAGTGCTCTGGTTGCAATTG GTGCCCTAGGGGCCGAGAACTGGGTGCTGCCCAGGTCTTTTCTGCTGGCT GCTGCGTAATCATGGAACTCGCGCATAGTGGCATTCTCGGGCGAATGCAC ACTTTTCGGTTAGCTCTTTTGTTCGTATAAGAAATTGTCTTAGTAGTAGT AGTTCGGAGAGAGATCATAAACAATCACGGCAGCCTACTTCCGCCGCCTC TCAGCCCATGTGAGCCTGCTTTTTTTTTTGCTCTGTTTTCTGCTGTTGTT CGGTTGGTTGCCTTGCGCCTGTCTTTCGGAAGCACGTTTTTTTGCTTCGG TCGCTCTCTCCCAAGACGACACCCGCGCTGGCTACACCGAGCCGCAAAAA TAGCTAGCCAAGGGTCAGGTTGCTGTCAACTTTTGGCTCAACTTTTAAGC GCTGTCTCTCTTGTTGGTTGCGGCAGCGCAAGTGTGCGAATGCGTCGAAT TATTCTCGTGGCAATACAGGCGTTTATTTTTTGCTGGTGCAACTTCTACC TTCTTCCGTGAGTACAGCACTGATGGTGTGAGCCGCTTCGGTTTATGGCG TTTCCTCATGTTACAGGGACGGATTTGTGTCATTTTTCCTATTTGTTTTC CATATTTGTGAGATGTTTGCCATGCATAACCAAATAAAACGTGAGTCATG TTGTGTTCGCTGTCTTTTGTGTGGCATGTCTGTATTCTCAGGACGGCACA AACGCCCTGATGGCGGCGGCATCGAACGGGCACCTCGAGGCGGCGACGAG CCTGGTCAAGGCCGGGGCGGCGCTGGACAAGCAGAACAGCGACGGCCACA GCGCCCTCATGTTCGCCTACAACGGCCGCGCTCAGGTGTGTTGTTTGTTA CAAGCAGTGTTGACATTTCCGTGGTTGTTGTTGTTGTTATGTAGTGGTGG TGGTGTCGCTGTCGCTCCTGTTTATTCTACGCTCTCACTCCCCCGTGTTG CAGAGCAGTGTGTTCGAGACTTTCTCTCTCTCTCTTTCCCTCTGGCGTGT TCCACAAATCCGACTTGGGTTCCTTCTGGGCGCTTGAGAGCGCTCACTCC TATTTAGTGCCAAGCTTTTGAGGCCCATGCACGGCTGGGAGGGGGTTGTT TTCCTAACCCCTTCATTCACTGCTTTGATCAGGGCGATTGTCGACGTTTG GTCGCGAGCGGTGCCGCTTCCTCAAGATTAGCCTAGATTATGTACATCAT TGACGGATGGGTGGTAAAACAAACGCAGGTGGCATCCCTGATGGACAAGT ACGCGGAGTACTTGGACGACGCAGACGACGCCTCGGGCGAGAGCACCAAG ATGATGCGAGAGGCTATGGCGCACACGCAGGTGCGGTGCTGTGGTGTGTT GTTTGTTGTTTGTTGTTGTTTCTCACATGAGCCCTCTAAATAGTCCGGAA ACATCCACCATGGGGGCCTCGTGGTCACAAAAATAGGGGCTGTGTGTATG GGAGAATGATACATATACAAATACATGCGTTTTTTTCGCCCGGGCGCTGA AAGGCGTTGCGCGATGCAGCTCGTGTCGGGCCATGTGGCAGCCACCGGTT CAGTCGGTACACGCACAGCACACACACTGGTGCACGAAAGCGCGCGCGCG GGGGTCTTGGTTCCCTACAGCGGCGGCGTCCTTGGTGTTTTTTTCATCCT GACTAGAGTATGACTACATATGATGTAGACGTGTTGCTGTGCGTTGGGCA ATTTGGGTGAGCGCTGCCAAGCAAAGAAAGGGCGTGGCCACCCGGGGGCT CCGATCACGGCAGAAGTAAGAACGACGGGGGGGTGAGCGGCAGGCACACT CACGTGAATAACGGGGTGTGTTGTTTGGCTCCCTTCCGAGTGGACTTTTG CGGTTGAGTGAGTGACGCATGTCTCACATGAGACTCTGCAATCTGCCAAA TATTTTTTTGCCGAAATGTACCGTAAAGCCATGTTTCGTGCCGTCTCTTC TAGCCCCCCCCCCCCCCCCCCCGTGGCTTCACTATTTACAAGGCAAATTG CACGAATATTTATCCCCCTGCTCCCCCCCGTTTGTTTTCTTTTCTGTCCG ATTTTTCCACGCAGTCGATTATCGACCTGTTGTTGACAAGTGGGGCGGAC CCTTCCCTCAAGGACACCGAGGGCCGCATGGCGAAGGACTTCGACTACCA GCCGCCAGCGGAGGGGGAGGAAGGGGCAGAGGACGCGTCCAAGATGGAGC TTTAGTGTAGTTCGATTGATGGCCGTTTTTTCCGTGGTATTCTTTTGATG TCCGTCCGTCCCGTGGCATCCGTGGCATCCGTGGCAGTTACCGCACCCCA CGTTTTTATAGTTCGGTTCATTTAATTATAAGCGGAGTTGGTGTCGTCTT TTGGTCCCCACGGGTGGGTACTTGGTATTTGGACCAACGTTTTCGGGGTT GCGCATGGTCTCGGAAGGTGTGTCTCTTCCCCCGTCATGAGATGGGTGGC CCAAAGAAAAGGTGTTGATTTAAATGGTCAAATAAACGGTCACGCGCGAG GTCTATCTTGTGTACACGGCTGGTGACGAAACACCAGCAGGCTGCCAAAT GCCAAATCGTCGTTGAAAAGCCACGGCGCCCCGCCAGACAGCTAGCGGCT ACCGAGTGTATTCACCCCCCCCCCCCCCCCCCATTCCCCCCATCCCCCCC CGGTGGGCTTCCGGGGGCGCGGAGGGATGTGGGGGGGAAAGAATCGGGCA ATTTTTTTATTCGAGCTGAAATCTGCGCACCTTTTTTTGGTAGGTTTTCA TCCGAGGGTTAATTCACCGTTCGGGTTATATATACCACGGTGCACAATTT TTTCACAAGTTTCAGCCCTAAATAAATACTAACAATTTTTTTTTTTGTCT CCACAACGAGTACTTTTAGCATACTGCCATTTGAGGGTCTGACTCACTGG GGGTGAAGCACCCCCGAACCGTAACGTCTGTGAGCGCTGGGTGTCCTTTT CGGAAACCGCCGTATGGTATGATATGTCCTTGGTGTGTAGGTTCATGACG GCGGGGGGGTTCAGGGGTTTTGCATATGCCTTGTTTTTGCGCGATCGGGC TAAGTGTGGTGTATTTGGCCGTGTTGGTAAGTCGCCTTTTTTTATGGCCC CCACGACCCGTTCGTTTTCGGGGGGTAAATTATTTTTGCATGTGGTAACC CGTCACCTGGTTCGTCGTGTGCGAGCGGGGGCATTCTTTCCAGATGCTTT TTTTCCCGCTCCACTTACCGAATGAGAATAAAGCGCGGTCGGTCCGCGAT GTTTGTCGAAGCTACTCGAAAACAGGTATTTTCTTGTCTATGAGAATGAA GTCGCCCCGGTGGTCTAGTAGTTTAACTTCGAACCCATTTGCAGCAGAGT CTGGAGTTTAATCCCAGGGAGAAGTGTCCCCTTTGCGACTTCACAGGTGA AAAAAGCGATAAAAGCTGAAAAGCCTGTGATGAGTACCAAACTTCGACGT ATTCACGTATTAGACGAGGGAAAAGGACATAGTTGTAGTACCTCGGAAGT ACCCACACAAGATGTAGTACACATCTCCACTGGGGGGAAATGTCGCCACA ACAACTGGGAATGACACAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5605:5548..10066+

>mRNA_L-elsbetiae_contig5605.13939.1 ID=mRNA_L-elsbetiae_contig5605.13939.1|Name=mRNA_L-elsbetiae_contig5605.13939.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:5548..10066+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCTTGGATGGACTGCATGCGTCCAGTTTGGACATGGTCCGCCGGCC
GACCCCCGTTGTCACAGCTTTCTCGTCTTGCGTTGGTTTTCCAACGGCTG
CTGTTCACAAATTGTCTTCGCTGCGTTGTGTTTTGATTCAGGGGCACGGT
GACATTGTGGACATGCTCTTGGCGACCAAGTGCAACAAGGACGCCGCAGA
TAAGATGTTCTTGGATGGACTGCATGCGTCCAGTTTGGACATGGTCCGCC
GGCCGACCCCCGTTGTCACAGCTTTCTCGTCTTGCGTTGGTTTTCCAACG
GCTGCTGTTCACAAATTGTCTTCGCTGCGTTGTGTTTTGATTCAGGGGCA
CGGTGACATTGTGGACATGCTCTTGGCGACCAAGTGCAACAAGGACGCCG
CAGATAAGGACGGCACAAACGCCCTGATGGCGGCGGCATCGAACGGGCAC
CTCGAGGCGGCGACGAGCCTGGTCAAGGCCGGGGCGGCGCTGGACAAGCA
GAACAGCGACGGCCACAGCGCCCTCATGTTCGCCTACAACGGCCGCGCTC
AGGACGGCACAAACGCCCTGATGGCGGCGGCATCGAACGGGCACCTCGAG
GCGGCGACGAGCCTGGTCAAGGCCGGGGCGGCGCTGGACAAGCAGAACAG
CGACGGCCACAGCGCCCTCATGTTCGCCTACAACGGCCGCGCTCAGGTGG
CATCCCTGATGGACAAGTACGCGGAGTACTTGGACGACGCAGACGACGCC
TCGGGCGAGAGCACCAAGATGATGCGAGAGGCTATGGCGCACACGCAGGT
GGCATCCCTGATGGACAAGTACGCGGAGTACTTGGACGACGCAGACGACG
CCTCGGGCGAGAGCACCAAGATGATGCGAGAGGCTATGGCGCACACGCAG
TCGATTATCGACCTGTTGTTGACAAGTGGGGCGGACCCTTCCCTCAAGGA
CACCGAGGGCCGCATGGCGAAGGACTTCGACTACCAGCCGCCAGCGGAGG
GGGAGGAAGGGGCAGAGGACGCGTCCAAGATGGAGCTTTAGTCGATTATC
GACCTGTTGTTGACAAGTGGGGCGGACCCTTCCCTCAAGGACACCGAGGG
CCGCATGGCGAAGGACTTCGACTACCAGCCGCCAGCGGAGGGGGAGGAAG
GGGCAGAGGACGCGTCCAAGATGGAGCTTTAG
back to top