mRNA_L-elsbetiae_contig5605.13938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5605.13938.1
Unique NamemRNA_L-elsbetiae_contig5605.13938.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A6H5KMP7_9PHAE (Ricin B-type lectin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMP7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.930e-19
Identity = 49/73 (67.12%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            DDAHRDDVTALMVAAQGGHEAVV+LLVEKGADVRAKDEEGFTP                      PNDVYTD+
Sbjct:  555 DDAHRDDVTALMVAAQGGHEAVVKLLVEKGADVRAKDEEGFTPLLNAGNFEEVASFLVESGAD--PNDVYTDD 625
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A7R9U5G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5G3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.790e-8
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 1 
Query:   10 HRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            H+D VTALMVAA GGH  VV++L+E  ADV A DEE +TP                      PNDV+ D+
Sbjct:  547 HKDGVTALMVAALGGHTEVVKMLLEAEADVTAADEENWTPLLNAVKGNHADLAALLVEHGANPNDVFVDD 616
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A8K0M3I7_9HYPO (Ankyrin repeat protein n=1 Tax=Ilyonectria sp. MPI-CAGE-AT-0026 TaxID=2824670 RepID=A0A8K0M3I7_9HYPO)

HSP 1 Score: 48.5 bits (114), Expect = 1.940e-5
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   43 AQGGHEAVVRLLVEKGADVRAKDEEGFTP 129
            AQ GHEA+V+LL+EKGADV AKDE G TP
Sbjct:    1 AQNGHEAIVKLLLEKGADVEAKDEYGHTP 29
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A7S1FMT5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMT5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.980e-5
Identity = 28/70 (40.00%), Postives = 34/70 (48.57%), Query Frame = 1 
Query:   10 HRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            H D VTA+ VAA GGH   V+ L+E GADV+AKD+E   P                      PN+ Y DE
Sbjct:  589 HVDGVTAIHVAAMGGHLKCVKSLIEAGADVKAKDDEDKGPLMNAVKGNYGDIASLLVENGADPNETYVDE 658
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A8J9T9S8_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9T9S8_PHATR)

HSP 1 Score: 48.1 bits (113), Expect = 2.300e-5
Identity = 29/73 (39.73%), Postives = 34/73 (46.58%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            D+ H D VTAL VAAQGGH A V  LVE GA++  +DEE  T                       PN  Y D+
Sbjct:   33 DEPHVDGVTALHVAAQGGHLATVEALVEAGANIGIQDEENRTSLLMAIKGNHGEVASALVRGGADPNTPYVDD 105
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A6A5V135_9PLEO (Ankyrin (Fragment) n=1 Tax=Bimuria novae-zelandiae CBS 107.79 TaxID=1447943 RepID=A0A6A5V135_9PLEO)

HSP 1 Score: 47.4 bits (111), Expect = 2.590e-5
Identity = 23/37 (62.16%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   19 DVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTP 129
            D   L+VAAQ GHEAVV LL+ KGAD+  KD+ G TP
Sbjct:   10 DQVQLLVAAQYGHEAVVELLLNKGADLETKDKNGQTP 46
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A6U4F0Y7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4F0Y7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.710e-5
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:   10 HRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            H+D VTALMVAA GGH  VV +L+E GADV A DE     XXXXXXXXXXXXXXXXXXXXX  NDV+TD+
Sbjct:  548 HKDGVTALMVAALGGHTKVVEMLLEAGADVTAVDEXXXXXXXXXXXXXXXXXXXXXXXXXXNANDVFTDD 617
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A7R9WK65_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK65_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 4.980e-5
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTP 129
            D+ H D VTA+ VAAQGGH   V+LLVE GADV   D+E  TP
Sbjct:  201 DEPHVDGVTAVHVAAQGGHIEDVKLLVEAGADVTVLDDEDRTP 243
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BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A395P1C1_TRIAR (Ankyrin repeat-containing n=1 Tax=Trichoderma arundinaceum TaxID=490622 RepID=A0A395P1C1_TRIAR)

HSP 1 Score: 49.3 bits (116), Expect = 5.010e-5
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   19 DVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTP 129
            ++T L++A+  GHEA+V+LLVEKGAD+ AKD  G TP
Sbjct:  436 NLTDLIIASYYGHEAIVKLLVEKGADIEAKDNNGQTP 472
[Close]
BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Match: A0A7S4K1G7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K1G7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 9.370e-5
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 DDAHRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPXXXXXXXXXXXXXXXXXXXXXXPNDVYTDE 219
            ++ H D VTA+ VAAQGGH   V++LVE GADV  +D+E  TP      XXXXXXXXXXXXXXXXPN  Y D+
Sbjct:  269 EEPHVDGVTAVHVAAQGGHLEDVQILVEAGADVTVQDDEDRTPLLLAVKXXXXXXXXXXXXXXXXPNTPYVDD 341
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5605.13938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KMP7_9PHAE2.930e-1967.12Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A7R9U5G3_9STRA3.790e-844.29Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K0M3I7_9HYPO1.940e-575.86Ankyrin repeat protein n=1 Tax=Ilyonectria sp. MPI... [more]
A0A7S1FMT5_9STRA1.980e-540.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A8J9T9S8_PHATR2.300e-539.73Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6A5V135_9PLEO2.590e-562.16Ankyrin (Fragment) n=1 Tax=Bimuria novae-zelandiae... [more]
A0A6U4F0Y7_9STRA2.710e-571.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9WK65_9STRA4.980e-560.47Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A395P1C1_TRIAR5.010e-559.46Ankyrin repeat-containing n=1 Tax=Trichoderma arun... [more]
A0A7S4K1G7_9STRA9.370e-560.27Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5605contigL-elsbetiae_contig5605:3042..4007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.2469075-CDS-L-elsbetiae_contig5605:3041..31881622816595.2469075-CDS-L-elsbetiae_contig5605:3041..3188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 3042..3188 +
1691683672.5266805-CDS-L-elsbetiae_contig5605:3041..31881691683672.5266805-CDS-L-elsbetiae_contig5605:3041..3188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 3042..3188 +
1622816595.2602048-CDS-L-elsbetiae_contig5605:3935..40071622816595.2602048-CDS-L-elsbetiae_contig5605:3935..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 3936..4007 +
1691683672.538413-CDS-L-elsbetiae_contig5605:3935..40071691683672.538413-CDS-L-elsbetiae_contig5605:3935..4007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 3936..4007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5605.13938.1prot_L-elsbetiae_contig5605.13938.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5605 3042..4007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5605.13938.1

>prot_L-elsbetiae_contig5605.13938.1 ID=prot_L-elsbetiae_contig5605.13938.1|Name=mRNA_L-elsbetiae_contig5605.13938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
DDAHRDDVTALMVAAQGGHEAVVRLLVEKGADVRAKDEEGFTPLLNAVKG
NFEEVASFLVESGADPNDVYTDE
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mRNA from alignment at L-elsbetiae_contig5605:3042..4007+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5605.13938.1 ID=mRNA_L-elsbetiae_contig5605.13938.1|Name=mRNA_L-elsbetiae_contig5605.13938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:3042..4007+ (Laminarionema elsbetiae ELsaHSoW15)
GACGACGCTCACAGGGACGATGTGACCGCCCTCATGGTAGCGGCGCAGGG
TGGTCACGAGGCGGTGGTGCGCTTGCTGGTGGAGAAGGGCGCGGACGTCC
GTGCCAAGGACGAGGAAGGGTTCACCCCCCTCCTCAACGCCGTCAAGGTT
TGTTCTTGCAGGCATGAAAGAGACAGCAGTGTTCCGTCACTCTTTTTTTT
TTACTTCAGCTTTTTGTAGGTTTGTATTTTAGTGGGGCATGACGAGAAAG
CCGCAAAGTTGTCTACTAGGGTCTTACCACGATTTGTTGAGGTTTTCGTA
GTATGTAATGGAGATGAGAAGGCTGAGGAAGGTGTAAACTGAAAAAAAAA
GAAAAGACTGTTGTAGGGTTCACGATATTTTGAGGTTTTCGTAGTTGGGA
TGGGAGGATCGCGGTGTAAACTAGTTGCTTTCGGTGGTGACATTTCGTGT
TGATGGTGGCAAAGCTGTGGTTGTTGTCTAGCCGGTGTGTTGGCTCATTC
TCACGGCTCGCACGGCAATTGTGAAGATGTATGTAGCATGCATGCTCCTT
GTTCAGCTGCGGGCGCTTTTGGATGCAAGGGAAACTGCTGAGCGCGCGGA
GATGAGGAGGCTCGACCATCATAAACACGCCGAGTCGCACGTCTACAAAA
AGAGAGGGACGTCTCAAAAGAAAGTTTTCCATCTTTTGTACAGCTGCTTA
TTCCAATAGATGAAATCGTTAGTCGTTAGTTTCCATTGCCTTCCATTGCT
TTTGACTATGGAGATTGTGTTGTCGTGCTCTTTCTCTCTCTGTCTCTATC
TCTATCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTTACACCTTTTA
TGTTTTGCGGTGTACCGCCACTTGTGCCCACCTCACCGATTCAGGGCAAC
TTCGAAGAGGTGGCGTCTTTCCTGGTGGAGAGCGGGGCCGACCCTAACGA
CGTCTACACGGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5605:3042..4007+

>mRNA_L-elsbetiae_contig5605.13938.1 ID=mRNA_L-elsbetiae_contig5605.13938.1|Name=mRNA_L-elsbetiae_contig5605.13938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:3042..4007+ (Laminarionema elsbetiae ELsaHSoW15)
GACGACGCTCACAGGGACGATGTGACCGCCCTCATGGTAGCGGCGCAGGG
TGGTCACGAGGCGGTGGTGCGCTTGCTGGTGGAGAAGGGCGCGGACGTCC
GTGCCAAGGACGAGGAAGGGTTCACCCCCCTCCTCAACGCCGTCAAGGAC
GACGCTCACAGGGACGATGTGACCGCCCTCATGGTAGCGGCGCAGGGTGG
TCACGAGGCGGTGGTGCGCTTGCTGGTGGAGAAGGGCGCGGACGTCCGTG
CCAAGGACGAGGAAGGGTTCACCCCCCTCCTCAACGCCGTCAAGGGCAAC
TTCGAAGAGGTGGCGTCTTTCCTGGTGGAGAGCGGGGCCGACCCTAACGA
CGTCTACACGGACGAGGGCAACTTCGAAGAGGTGGCGTCTTTCCTGGTGG
AGAGCGGGGCCGACCCTAACGACGTCTACACGGACGAG
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