mRNA_L-elsbetiae_contig5605.13937.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5605.13937.1
Unique NamemRNA_L-elsbetiae_contig5605.13937.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5605.13937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5605contigL-elsbetiae_contig5605:1662..2258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size597
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5605.13937.1prot_L-elsbetiae_contig5605.13937.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5605 1822..2136 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.1917036-UTR-L-elsbetiae_contig5605:1661..18211622816595.1917036-UTR-L-elsbetiae_contig5605:1661..1821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 1662..1821 +
1691683672.492108-UTR-L-elsbetiae_contig5605:1661..18211691683672.492108-UTR-L-elsbetiae_contig5605:1661..1821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 1662..1821 +
1622816595.2149656-UTR-L-elsbetiae_contig5605:2136..22581622816595.2149656-UTR-L-elsbetiae_contig5605:2136..2258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 2137..2258 +
1691683672.5171766-UTR-L-elsbetiae_contig5605:2136..22581691683672.5171766-UTR-L-elsbetiae_contig5605:2136..2258Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5605 2137..2258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816595.201875-CDS-L-elsbetiae_contig5605:1821..21361622816595.201875-CDS-L-elsbetiae_contig5605:1821..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 1822..2136 +
1691683672.5067601-CDS-L-elsbetiae_contig5605:1821..21361691683672.5067601-CDS-L-elsbetiae_contig5605:1821..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5605 1822..2136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5605.13937.1

>prot_L-elsbetiae_contig5605.13937.1 ID=prot_L-elsbetiae_contig5605.13937.1|Name=mRNA_L-elsbetiae_contig5605.13937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MYTAGVPCTCCCIVVSKYQECCTGHDNVIDDDTCAHGRNLSVPHRSACML
AHTCDYFVVPGLPFLYPLVAVARLPTAPPFLPARRACTPPRCRPWIECLM
CRPT*
back to top

mRNA from alignment at L-elsbetiae_contig5605:1662..2258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5605.13937.1 ID=mRNA_L-elsbetiae_contig5605.13937.1|Name=mRNA_L-elsbetiae_contig5605.13937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=597bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:1662..2258+ (Laminarionema elsbetiae ELsaHSoW15)
CAGTCACGGTATATTATCCACGCGCGTTATTTTCCACTACGGTGCCCCGT
GGTTGTTCCTCTGGTACATTGTGCTTTGTGGAAGGTGCCCCGTGGTTGTT
GCTCTGGTACATTGTGCTTTGTGGAACGGCTAGTCTGCGTGCGTGTCGGG
GAACCTAAAAATGTATACAGCAGGTGTGCCATGTACGTGCTGCTGTATTG
TAGTATCAAAGTATCAAGAGTGTTGCACTGGTCATGACAACGTTATCGAC
GATGATACCTGCGCCCACGGTCGAAACTTGTCTGTACCTCACAGAAGCGC
ATGCATGCTCGCTCACACGTGCGACTATTTTGTTGTTCCGGGTTTGCCTT
TTCTCTACCCTCTTGTGGCTGTCGCCCGTTTACCCACGGCGCCCCCTTTT
TTGCCCGCTCGGCGTGCATGCACGCCTCCTCGTTGTCGGCCGTGGATCGA
ATGCCTGATGTGCCGGCCGACTTGACGAAACACAACACAACGAACGACCC
CACCTGGACTAAACAGGGGCGAACCGAGGCCTGCAAGGTGCTGATCGCCA
AGGGCAACGAGGTGAACGCCATGGCCAACTCCGGGGGCACCTCCCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5605:1662..2258+

>mRNA_L-elsbetiae_contig5605.13937.1 ID=mRNA_L-elsbetiae_contig5605.13937.1|Name=mRNA_L-elsbetiae_contig5605.13937.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig5605:1662..2258+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATACAGCAGGTGTGCCATGTACGTGCTGCTGTATTGTAGTATCAAA
GTATCAAGAGTGTTGCACTGGTCATGACAACGTTATCGACGATGATACCT
GCGCCCACGGTCGAAACTTGTCTGTACCTCACAGAAGCGCATGCATGCTC
GCTCACACGTGCGACTATTTTGTTGTTCCGGGTTTGCCTTTTCTCTACCC
TCTTGTGGCTGTCGCCCGTTTACCCACGGCGCCCCCTTTTTTGCCCGCTC
GGCGTGCATGCACGCCTCCTCGTTGTCGGCCGTGGATCGAATGCCTGATG
TGCCGGCCGACTTGAATGTATACAGCAGGTGTGCCATGTACGTGCTGCTG
TATTGTAGTATCAAAGTATCAAGAGTGTTGCACTGGTCATGACAACGTTA
TCGACGATGATACCTGCGCCCACGGTCGAAACTTGTCTGTACCTCACAGA
AGCGCATGCATGCTCGCTCACACGTGCGACTATTTTGTTGTTCCGGGTTT
GCCTTTTCTCTACCCTCTTGTGGCTGTCGCCCGTTTACCCACGGCGCCCC
CTTTTTTGCCCGCTCGGCGTGCATGCACGCCTCCTCGTTGTCGGCCGTGG
ATCGAATGCCTGATGTGCCGGCCGACTTGA
back to top