mRNA_L-elsbetiae_contig5604.13936.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.200e-70 Identity = 170/270 (62.96%), Postives = 173/270 (64.07%), Query Frame = 3 Query: 1977 MSRHCVSVLLLVCIAQACLAFVPSWTATSRSSRSQPPASTPAAATFSLSQPSGAICPVFGACGACGAHTFYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKIDGIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRREKEQLRELLLKKEDRLSRIEQLRANNAPAGIEASHYV*KFTATAVYRLGKARRSPAIKADHLKQF*EFLVAGTFVVLSFCTGNSPPLQSNLRTLW 2786 MSR+CVSVLLLV IAQACLAFVPSWTAT RSSRSQPPASTPAAATFSLSQPSG ICPVFGAC CGA FYPV G+TSLSAMSEG EEEGGGDH AREAADGSPAADEIRAVQXXXXXXXXXXXXXX DGIEAAIAGGSRYLGMTDPEALLKQLGRKE EQLR QL +LSFCTGNSPPLQSNLRTLW Sbjct: 1 MSRNCVSVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKE---EQLRXXXXQL----------------------------------------------------------------------LLSFCTGNSPPLQSNLRTLW 197
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI) HSP 1 Score: 158 bits (400), Expect = 3.790e-41 Identity = 115/148 (77.70%), Postives = 122/148 (82.43%), Query Frame = 3 Query: 2202 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXX-------EETAEVVKKIDGIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRREKEQ----------LRELLLKKEDRLSRIEQLRANNAPAGI 2594 +TS SAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXX EETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKE EQLRR++ + +LLKKEDRLSRIEQLRANNAPAG+ Sbjct: 1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKE---EQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGV 145
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.350e-39 Identity = 99/144 (68.75%), Postives = 104/144 (72.22%), Query Frame = 3 Query: 2202 ITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKIDGIEAAIAGGSRYLGMTDPEALLKQLGRKEDE---------------KEQLRREKEQLRELLLKKEDRLSRIEQLRANNAPA 2588 +TSLSAMSEGDEEEGGGDHDAREAAD PAADEIRAVQ X +ETAEVVKKID IEAAIAGGSRYLGMTDPEALLKQLGRKE++ +E L L ELLLKKEDR SRIEQLRANNAPA Sbjct: 1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELL------LNELLLKKEDRFSRIEQLRANNAPA 138
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI) HSP 1 Score: 152 bits (383), Expect = 9.750e-39 Identity = 98/156 (62.82%), Postives = 100/156 (64.10%), Query Frame = 3 Query: 2184 FYPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKIDGIEAAIAGGSRYLGMTDPEALLKQLGRKEDEKEQLRREKEQLR---------------------ELLLKKEDRLSRIEQLRANNAPA 2588 FYPVRG+T LSAMSEGDEEEGGGDH AREAAD PAADEIRAVQ EETAEVVKKID IEAAIAGG+RYLGMTDPEALLKQL EQLRR ELLLK EDRLSR EQ RANNAPA Sbjct: 2 FYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL-------EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI) HSP 1 Score: 131 bits (330), Expect = 1.030e-31 Identity = 98/143 (68.53%), Postives = 104/143 (72.73%), Query Frame = 3 Query: 2187 YPVRGITSLSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXEETAEVVKKIDGIEAA-IAGGSRYLGMTDPEALLKQLGRKEDEKEQLRREKEQLRELLLKKEDRLSRIEQLRANNAPAGIEASHYV 2612 YPVRGITSLSA+SEG+EE+GGGDHD REAA GSPAADEIRAVQXXXXXXXXXXXXXX KID +EAA IAGGS YLGMTDPEALLK+ R +L KE RL IEQ RANNAPAG EASHYV Sbjct: 3 YPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEKERLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGTEASHYV 145 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5604.13936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5604.13936.1 >prot_L-elsbetiae_contig5604.13936.1 ID=prot_L-elsbetiae_contig5604.13936.1|Name=mRNA_L-elsbetiae_contig5604.13936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp MHQVSSIGAAPVGGNGRRKSNPPGGIVNVATNNPRTPFLEKGVLNAKKRKback to top mRNA from alignment at L-elsbetiae_contig5604:6742..10189+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5604.13936.1 ID=mRNA_L-elsbetiae_contig5604.13936.1|Name=mRNA_L-elsbetiae_contig5604.13936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3448bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:6742..10189+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5604:6742..10189+ >mRNA_L-elsbetiae_contig5604.13936.1 ID=mRNA_L-elsbetiae_contig5604.13936.1|Name=mRNA_L-elsbetiae_contig5604.13936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:6742..10189+ (Laminarionema elsbetiae ELsaHSoW15)back to top |