mRNA_L-elsbetiae_contig5604.13935.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI) HSP 1 Score: 213 bits (543), Expect = 6.630e-67 Identity = 133/218 (61.01%), Postives = 147/218 (67.43%), Query Frame = 1 Query: 1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGIDTPLSRGRDERVLPRNGGADRRRRECGQQARRRSNTSVFSGKRRAARSGQGSPSGERESALVSVRKSPVVYGGLQWTPESGPRARALVRNRPLYKRRRRTGSRNGRFSQTRGHRHLPLRCRCG 654 MPSTLSK+SGS++ +ATT IDR CGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDG TALHHSVYHNHLAVSKDLIE GADLEARHGG DTPL + R + G T +F AA G+ E L+ +P++ R LVRNR LYKRRRRTGSRNGRFSQ+RGHRHLP+RCRCG Sbjct: 1 MPSTLSKASGSIDPTIATTGIDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLMDSRLDDGA-------TPLFL----AASDGRL----EAVRVLLRANANPLLSACGSLPLYMAVYNRPLVRNRSLYKRRRRTGSRNGRFSQSRGHRHLPVRCRCG 203
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5JHQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE) HSP 1 Score: 163 bits (413), Expect = 1.740e-44 Identity = 85/93 (91.40%), Postives = 87/93 (93.55%), Query Frame = 1 Query: 1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHG 279 MPSTLSK+SGSVERAVATTDIDRRCGDTN TPLMVASVIGSSRVV+DLLRQGASVSVADSDGYTALHHSVYH HLAVS LIE GADLEAR G Sbjct: 1 MPSTLSKASGSVERAVATTDIDRRCGDTNHTPLMVASVIGSSRVVKDLLRQGASVSVADSDGYTALHHSVYHRHLAVSISLIEAGADLEARPG 93
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE) HSP 1 Score: 164 bits (414), Expect = 5.160e-43 Identity = 82/91 (90.11%), Postives = 86/91 (94.51%), Query Frame = 1 Query: 25 SGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSKDLIEGGADLEARHGGIDTPL 297 SGSVER +ATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVS+ADSDGY ALHH+VYH HLAVSKDLIE GADL+AR GGIDTPL Sbjct: 399 SGSVERPIATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSLADSDGYPALHHAVYHKHLAVSKDLIEAGADLDARPGGIDTPL 489
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5L5L0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE) HSP 1 Score: 139 bits (349), Expect = 4.830e-35 Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1 Query: 1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSK 237 MPSTLSK+SGS + +ATTDIDRRCGDTNQTPLMVASVIG SRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSK Sbjct: 7 MPSTLSKASGSADPTIATTDIDRRCGDTNQTPLMVASVIGPSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 85
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE) HSP 1 Score: 138 bits (347), Expect = 6.470e-34 Identity = 70/79 (88.61%), Postives = 74/79 (93.67%), Query Frame = 1 Query: 1 MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHSVYHNHLAVSK 237 MPSTLSK+SGS + +ATTDIDRRCG TNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHH+VYH HLAVSK Sbjct: 422 MPSTLSKASGSADPTIATTDIDRRCGGTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGYTALHHAVYHKHLAVSK 500
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE) HSP 1 Score: 125 bits (313), Expect = 2.950e-30 Identity = 64/119 (53.78%), Postives = 82/119 (68.91%), Query Frame = 2 Query: 299 HVAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACESLPLYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGVV 655 H+AA +GFC+GMV LI+AGANVDSR+ DG+T ++ AA G LEAV +L + ANPLL + PL +A + GHL VV+ELV +G D C +G AL TAA H I+TFL DAGV+ Sbjct: 132 HLAAGEGFCEGMVALINAGANVDSRMSDGSTAMYIAACLGNLEAVEILFQKKANPLLRVGPTHPLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVI 250
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI) HSP 1 Score: 124 bits (312), Expect = 3.720e-30 Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = 2 Query: 299 HVAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACESLPLYMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVTFLCDAGV 652 H+A +GFC GMV LIDAGANVDSR+ +G+T ++ AA G L+AV++LL+ ANP+L + PL +A + GHL VV+ELV +G D C+ +G AL TAA H I+TFL DAGV Sbjct: 119 HLATGEGFCDGMVALIDAGANVDSRMSNGSTAMYIAACTGNLDAVKILLQERANPMLCVGPTHPLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGV 236
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI) HSP 1 Score: 100 bits (250), Expect = 8.690e-22 Identity = 61/125 (48.80%), Postives = 78/125 (62.40%), Query Frame = 2 Query: 302 VAATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLL------SACESLPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655 +AA G M L++AGAN++SR DGATPLF AA +G ++AVR+LL A +PLL S SLPL +A GHL+VV EL+ G C S GG AL AA KH+D++T L +AGVV Sbjct: 23 IAAVNGCAASMTTLLEAGANLNSRRFDGATPLFLAAWEGNVDAVRLLLLAKVDPLLTPHLGTSERASLPLDVAAGLGHLEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVV 147
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.530e-17 Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 305 AATKGFCQGMVVLIDAGANVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACES------LPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655 AA G + L+ AG+N+++R DGATPL++AA +G + AV +LL A A+PLL+ LPL +A NGH +VV EL+ G D C S GG AL AA +DI+ L DAGVV Sbjct: 122 AAETGCAASVTALLKAGSNINTRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVV 245
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 3.430e-14 Identity = 49/106 (46.23%), Postives = 65/106 (61.32%), Query Frame = 2 Query: 359 NVDSRLDDGATPLFSAASDGRLEAVRVLLRANANPLLSACES------LPLYMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKHVDIVTFLCDAGVV 655 N++SR DGATPL++AA G ++A R+LL A A+PLL+ LPL A NGH +VV EL+ G D C S GG AL AA K+++I+ L +AGVV Sbjct: 140 NLNSRRSDGATPLYTAAWKGNVDAARLLLLAKADPLLTTVPDPSGRTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVV 245 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5604.13935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5604.13935.1 >prot_L-elsbetiae_contig5604.13935.1 ID=prot_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp MPSTLSKSSGSVERAVATTDIDRRCGDTNQTPLMVASVIGSSRVVRDLLRback to top mRNA from alignment at L-elsbetiae_contig5604:3845..4501- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5604.13935.1 ID=mRNA_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=657bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:3845..4501- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5604:3845..4501- >mRNA_L-elsbetiae_contig5604.13935.1 ID=mRNA_L-elsbetiae_contig5604.13935.1|Name=mRNA_L-elsbetiae_contig5604.13935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1314bp|location=Sequence derived from alignment at L-elsbetiae_contig5604:3845..4501- (Laminarionema elsbetiae ELsaHSoW15)back to top |