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Homology
BLAST of mRNA_L-elsbetiae_contig5600.13930.1 vs. uniprot
Match: A0A6H5K415_9PHAE (DUF4042 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K415_9PHAE) HSP 1 Score: 198 bits (503), Expect = 9.450e-55 Identity = 131/242 (54.13%), Postives = 148/242 (61.16%), Query Frame = 1
Query: 1 CRWNCCIALGVVLSAPGVQARVAEATWAPNLMRSLRRAVVEDSHLKVRTHAAHALRTVRDARRAYGDQLPPILGGSLRGLRACRQRSVVADPTQMRYIGDLEAALLSLVLHILLALVL--DGHASAASELAATAIAPAGAGATAAPLLAEYADELLE---------------LLSSPEADTALRASELLPHYHHRYRQTGASLLVA-----AEGVPRQAGDGGGSGGVEGLREEADSTSCFP 660
CRWNCCIALGVVLSA GVQAR A A WAP LM+SL RAV++D+HLKVRTHAAHAL+ V DAR AYGDQLP ILGG LRGL AC+ RS+VAD TQMRY GDLE AL SLVLHIL+ALV D +S+AS A G LL EYAD +LSSPE+DTAL SEL P+Y R L + A+ +P+Q G G L EE S S P
Sbjct: 1345 CRWNCCIALGVVLSARGVQARAARAQWAPVLMQSLGRAVLDDNHLKVRTHAAHALKAVLDAR-AYGDQLPSILGGCLRGLDACKNRSIVADSTQMRYAGDLEVALRSLVLHILIALVALGDDASSSASAGKPGDAADCGGXXXXXXLLGEYADXXXXXXXXXXXXXXXXXXGVLSSPESDTALSPSELSPYYRPRXXXXXXRLPIENFQLMAQNIPQQDGRNQQDKGA--LGEEMTSASFQP 1583
BLAST of mRNA_L-elsbetiae_contig5600.13930.1 vs. uniprot
Match: D7FH12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH12_ECTSI) HSP 1 Score: 155 bits (391), Expect = 9.930e-40 Identity = 97/169 (57.40%), Postives = 112/169 (66.27%), Query Frame = 1
Query: 109 RAVVEDSHLKVRTHAAHALRTVRDARRAYGDQLPPILGGSLRGLRACRQRSVVADPTQMRYIGDLEAALLSLVLHILLALVLDGHASAASELAATAIAPAGAGAT----AAPLLAEYADELLELLSSPEADTALRASELLPHYHHRYRQTGASL---LVAAEGVPRQAG 594
RAV++D+HLKVRTHAAHAL+ V DAR AYGDQLP ILGG LRGL AC+ RSVVADPTQMRY GDLE AL SLVLHIL+ALV G ++ +A LL EYADELLE+LSSPE+D AL SEL P+Y R R+ + A G+P Q G
Sbjct: 1271 RAVLDDNHLKVRTHAAHALKAVLDAR-AYGDQLPSILGGCLRGLAACKSRSVVADPTQMRYAGDLEVALRSLVLHILIALVALGDDASXXXXXXXXXXXXXXXXXXXXPSAALLGEYADELLEVLSSPESDAALSPSELSPYYRPRPRRRRLPIEDFQSVARGIPHQDG 1438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Model size | 663 |
| Cds size | 663 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816594.6790838-CDS-L-elsbetiae_contig5600:8128..8329 | 1622816594.6790838-CDS-L-elsbetiae_contig5600:8128..8329 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 8129..8329 - |
| 1691683672.1711736-CDS-L-elsbetiae_contig5600:8128..8329 | 1691683672.1711736-CDS-L-elsbetiae_contig5600:8128..8329 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 8129..8329 - |
| 1622816594.69053-CDS-L-elsbetiae_contig5600:9144..9319 | 1622816594.69053-CDS-L-elsbetiae_contig5600:9144..9319 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 9145..9319 - |
| 1691683672.1816792-CDS-L-elsbetiae_contig5600:9144..9319 | 1691683672.1816792-CDS-L-elsbetiae_contig5600:9144..9319 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 9145..9319 - |
| 1622816594.7011635-CDS-L-elsbetiae_contig5600:9809..9986 | 1622816594.7011635-CDS-L-elsbetiae_contig5600:9809..9986 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 9810..9986 - |
| 1691683672.1909297-CDS-L-elsbetiae_contig5600:9809..9986 | 1691683672.1909297-CDS-L-elsbetiae_contig5600:9809..9986 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 9810..9986 - |
| 1622816594.7130582-CDS-L-elsbetiae_contig5600:10902..11012 | 1622816594.7130582-CDS-L-elsbetiae_contig5600:10902..11012 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 10903..11012 - |
| 1691683672.2008512-CDS-L-elsbetiae_contig5600:10902..11012 | 1691683672.2008512-CDS-L-elsbetiae_contig5600:10902..11012 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5600 10903..11012 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5600.13930.1 >prot_L-elsbetiae_contig5600.13930.1 ID=prot_L-elsbetiae_contig5600.13930.1|Name=mRNA_L-elsbetiae_contig5600.13930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
CRWNCCIALGVVLSAPGVQARVAEATWAPNLMRSLRRAVVEDSHLKVRTH
AAHALRTVRDARRAYGDQLPPILGGSLRGLRACRQRSVVADPTQMRYIGD
LEAALLSLVLHILLALVLDGHASAASELAATAIAPAGAGATAAPLLAEYA
DELLELLSSPEADTALRASELLPHYHHRYRQTGASLLVAAEGVPRQAGDG
GGSGGVEGLREEADSTSCFPP back to topmRNA from alignment at L-elsbetiae_contig5600:8129..11012- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5600.13930.1 ID=mRNA_L-elsbetiae_contig5600.13930.1|Name=mRNA_L-elsbetiae_contig5600.13930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2884bp|location=Sequence derived from alignment at L-elsbetiae_contig5600:8129..11012- (Laminarionema elsbetiae ELsaHSoW15)
TGCAGGTGGAACTGCTGCATCGCGTTGGGGGTCGTGCTCTCCGCCCCCGG
GGTGCAAGCGAGGGTAGCGGAGGCGACATGGGCGCCAAATCTCATGCGAT
CCCTTCGAAGGTTTGGCGAGATGTGTCTCTGTGCGGAACGCTTCTCGTGC
TCTTCGTGCATATGTACATGTTCCTCGTACATAGAAGTAAATACATATTC
CGTTCGTCAGGGGGCGGAATCACGATGTTTCCAACCGCGTTTTGGTGTTC
CTCGTTGTATAGAGCGCTGAAGTCAGCCGAAATACTTTTGGTAAACGGAA
TACACGATTCTACAGGGTACGTACAAAAAGGCCACTTTCTCTCTGCACGG
CTGCTGAACGCGGGTGCCGGCAGTGGGCTGGTGTTTGGCTCCTCTCATGC
TGTAAAGACCGTTTGGTATGCCAAGACCTAGATGTTTCCTTCCTTTTGTG
CCGCCTGAGATGAGATGAAGATGCAAGATTTTTGTCCCTGATGCGGCCGT
TCCTTGCGCACGCGGCTCGTTGTCGCCGGCGGCCTCTCTTACGGCTCTAG
TCTTTCCGTGTAGGTATACCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCGCCTGTGCGAGGCCAAGGTTTTCTGCTACCATAACATG
GACACACTGTGGCTGGCGTATGTGGTTTTGGCCGATCTACCTTGAATTAC
CTACGCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTTTTTTCTCCTC
TCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGCCGNNNNNNNNNNG
GCTGAGGTTTTTGGCGCCCTTAACCTGGCCACACTGGGGCGGGCGTTTGT
GTTTTTGGCCGTTCTCCCTTGAATTCCCTCCGCCCCCCCCCCCCCCGCCT
TTTTTTCTTTCTCTCTATCTCCGTTCTCCACACGCCAACTGCCAACTCGC
CCCGTTCATGCGACGACGGCAACACCATCGATCAACGATATCCGACGCCG
GCGTTTTGTTGGCGGCAAACAAACAGGGCTGTCGTGGAAGACAGCCACCT
CAAGGTCCGCACCCACGCCGCCCACGCTCTGAGGACCGTCCGCGATGCCC
GGCGAGCCTACGGCGACCAGCTGCCGCCCATACTGGGCGGCTCTCTTCGG
GGGCTCCGTGCGTGCAGGCAGAGGTCCGTCGTGGCTGACCCGACGCAGAT
GAGGCAAGTGATGCGTGAGCGGGGTGTGGGACGCTAGGAAGGCGGGTTGT
TGGTTGCCTGGTTGTCCTTCTGCAGCGGTGTACGAGTGCTTGCACCATCG
GCGTTTATTTTGTCTGGCGTGTTAGTGCCGTGCCGTGCCGTGCCGTGCCG
TGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCG
TGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCCGTGCTGCAGGTATTTA
TCTACACGAGAAGTGTATGTATAGTTTTGTTCGTGGCTTGTCACCTTACG
ACGTCCGTAGCGGGGTGGTGGAACCCCAAGTCGCCGGTAACAATCCACCT
AGTCCCTAGTATGTACAATACACGATTCCGCCCAAACCGCAGTCACCAAA
CCGGTACCTCTTTCCACGCCTTGGGTGCTGCCCTCTGACTTCTTTTTACT
CTCCTCCCCGGCCGATGTTCCGTTGCTTTCTCGTGCTCGGCAGGTACATT
GGCGATCTAGAGGCCGCCCTGCTCTCTCTCGTGCTCCACATCCTTCTAGC
TCTGGTGCTAGATGGCCACGCTTCTGCCGCTAGCGAGCTCGCCGCCACGG
CCATCGCCCCTGCTGGTGCCGGTGCAACGGCAGCGCCGCTGCTCGCAGAG
TACGCCGACGAGCTGCTGGTGGGTGTTGTGTTTCACGTCGAGCAAGCAAG
AGTTTTGTCGGCGGTCACCGCTGACAGAAACAAGGAAGCTTCTGTTTTCT
ACAACGAGATTTGCTTCAAACTTTGGCACGACATAATGCGTTGAGTCTTG
GGGGTCGTTGAGTTGGCGGGCGGGACAATCACCCGCGACAACGAAGGTCG
TGATGCCCTCCCCTGCTTCCCACCGCCCCTGTAGTCTATCGACTAGAAGT
ACTGCTTTGTAGCATGCCACGATCAGCGAGTAGCCACACAGCTAACCAGC
AATAGGCATGCCGTAGATCGTCTCTCTGGGTGTTCGTTTTTTATGTCCAG
AGTTGAAACCGTTTCTACCTCTCTTTGGTCCAAGTTGAATCGTTTCGCAT
TTCTTTTTATTGCTTGGAGAGCGAGACATATAGACAGATGGATAGAAAGA
GGCAGGCAGAGAGGTGGAGAGGGATATAGAGAGAACACGACTCAAAATAA
AAGTTGCCACTGGCGGTCGACGTTTTTGGTTCGGTGACGCGTTTCAGAGA
CGGAGAGTTTGGGTTGATGTATGCTGCGTGGTCGCTGGGTGTTGCCTGCG
GCCCGGCCCCGACACCAGCCTCTGTGTCGGCTAGAACACGCTGAAAAAAG
GGAAACACCGCGTTCTGGCAGTTGCCCAGAACCCTCCAGCTGTAGTTTAG
CTGTGGCACCCTCGTGTATTTCGAAGTATATAGTAGAGAGGTATCATGCC
CTATTGTACCACTTACTGCTATTGTACCCCCCCCCCCCATACCTCTGAGA
ACCACCGCGGCCACGGCACTCGTATTGTTACAGGAGCTCCTGTCGTCCCC
CGAGGCGGACACAGCGCTGAGGGCTTCGGAGCTCTTGCCGCACTATCACC
ATCGCTACCGGCAGACGGGGGCTTCTCTCCTGGTGGCAGCAGAAGGCGTT
CCCCGGCAAGCGGGAGACGGAGGAGGAAGCGGAGGGGTCGAGGGTCTGCG
AGAGGAGGCCGATTCGACCTCGTGTTTCCCGCCT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5600:8129..11012- >mRNA_L-elsbetiae_contig5600.13930.1 ID=mRNA_L-elsbetiae_contig5600.13930.1|Name=mRNA_L-elsbetiae_contig5600.13930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig5600:8129..11012- (Laminarionema elsbetiae ELsaHSoW15)
TGCAGGTGGAACTGCTGCATCGCGTTGGGGGTCGTGCTCTCCGCCCCCGG
GGTGCAAGCGAGGGTAGCGGAGGCGACATGGGCGCCAAATCTCATGCGAT
CCCTTCGAAGTGCAGGTGGAACTGCTGCATCGCGTTGGGGGTCGTGCTCT
CCGCCCCCGGGGTGCAAGCGAGGGTAGCGGAGGCGACATGGGCGCCAAAT
CTCATGCGATCCCTTCGAAGGGCTGTCGTGGAAGACAGCCACCTCAAGGT
CCGCACCCACGCCGCCCACGCTCTGAGGACCGTCCGCGATGCCCGGCGAG
CCTACGGCGACCAGCTGCCGCCCATACTGGGCGGCTCTCTTCGGGGGCTC
CGTGCGTGCAGGCAGAGGTCCGTCGTGGCTGACCCGACGCAGATGAGGGC
TGTCGTGGAAGACAGCCACCTCAAGGTCCGCACCCACGCCGCCCACGCTC
TGAGGACCGTCCGCGATGCCCGGCGAGCCTACGGCGACCAGCTGCCGCCC
ATACTGGGCGGCTCTCTTCGGGGGCTCCGTGCGTGCAGGCAGAGGTCCGT
CGTGGCTGACCCGACGCAGATGAGGTACATTGGCGATCTAGAGGCCGCCC
TGCTCTCTCTCGTGCTCCACATCCTTCTAGCTCTGGTGCTAGATGGCCAC
GCTTCTGCCGCTAGCGAGCTCGCCGCCACGGCCATCGCCCCTGCTGGTGC
CGGTGCAACGGCAGCGCCGCTGCTCGCAGAGTACGCCGACGAGCTGCTGG
TACATTGGCGATCTAGAGGCCGCCCTGCTCTCTCTCGTGCTCCACATCCT
TCTAGCTCTGGTGCTAGATGGCCACGCTTCTGCCGCTAGCGAGCTCGCCG
CCACGGCCATCGCCCCTGCTGGTGCCGGTGCAACGGCAGCGCCGCTGCTC
GCAGAGTACGCCGACGAGCTGCTGGAGCTCCTGTCGTCCCCCGAGGCGGA
CACAGCGCTGAGGGCTTCGGAGCTCTTGCCGCACTATCACCATCGCTACC
GGCAGACGGGGGCTTCTCTCCTGGTGGCAGCAGAAGGCGTTCCCCGGCAA
GCGGGAGACGGAGGAGGAAGCGGAGGGGTCGAGGGTCTGCGAGAGGAGGC
CGATTCGACCTCGTGTTTCCCGCCTGAGCTCCTGTCGTCCCCCGAGGCGG
ACACAGCGCTGAGGGCTTCGGAGCTCTTGCCGCACTATCACCATCGCTAC
CGGCAGACGGGGGCTTCTCTCCTGGTGGCAGCAGAAGGCGTTCCCCGGCA
AGCGGGAGACGGAGGAGGAAGCGGAGGGGTCGAGGGTCTGCGAGAGGAGG
CCGATTCGACCTCGTGTTTCCCGCCT back to top
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