mRNA_L-elsbetiae_contig5596.13915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5596.13915.1
Unique NamemRNA_L-elsbetiae_contig5596.13915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: D7FNG9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNG9_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 4.570e-126
Identity = 212/331 (64.05%), Postives = 244/331 (73.72%), Query Frame = 1
Query:    1 MTSLDFQSLLKQEKALRQAELEQQHAQDKKIDSLEADNTAR----------------QAKVVAKPRHDDQTEPSPWFVELAERPVLEMDKARFQYMRVGDTPTIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVG---SASD-----GGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRRI-SADAG 918
            MTSLDFQSLLKQEKAL++ +L    AQ  +  +++                      ++KVV         EPSP  V+LA RP L+M+K     MRVG+TP+IFYVPDFIS ADEQQ+L R +A      +SNEWV+LR+RRLKCWGGQPGESFRPEPLPPWV ALC+SLV+RGVF+EE RPNHVLLNEYQPGQGIMAHTDGPFY+PRTATLSLGSDAVMHFSPR+  + +GRPGVE+RPQASLVLRA  LVVFAD+AYS  LHSIDAV EETVG   S+ D     GG   G APVIN  AA  PEGT+LRRKLRVSLTFRR+ +AD G
Sbjct:    1 MTSLDFQSLLKQEKALQRVQL----AQSTRTTAVQXXXXXXXXXXXXXXXXXXXXXXESKVVGT------KEPSPLLVKLAGRPSLDMEK-----MRVGNTPSIFYVPDFISGADEQQLLERIHAQA----SSNEWVTLRSRRLKCWGGQPGESFRPEPLPPWVDALCESLVVRGVFSEETRPNHVLLNEYQPGQGIMAHTDGPFYEPRTATLSLGSDAVMHFSPRIETSRIGRPGVETRPQASLVLRALSLVVFADDAYSRLLHSIDAVREETVGCGGSSGDVGKRGGGGVGGGAPVINGAAAGAPEGTILRRKLRVSLTFRRVRAADRG 312          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A7S2G6U9_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6U9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 9.550e-57
Identity = 108/216 (50.00%), Postives = 143/216 (66.20%), Query Frame = 1
Query:  259 TIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRK-LRVSLTFRRI 903
            T+ Y+P++++E +E  I+A+TYA     ++   WV+LR RRL+CWGG+P      EPLPPW++ L + LV  G+F  E  PNHVLLNEY+ G+GIMAHTDG FY P+TATLSLG  AVM F+PR+ P  VG   V+ RP A +VLR R LVVF +EAY + LH+I A   + VG+A         APV N E+A    G ++ R  +R+SLTFR I
Sbjct:  101 TVSYLPEWVAEDEEAAIMAQTYAVP---DSHPSWVTLRGRRLQCWGGEPRRDSAAEPLPPWLQRLSEGLVEAGIFPAEVAPNHVLLNEYKAGEGIMAHTDGDFYHPQTATLSLGGTAVMTFAPRVQPRAVGL--VDGRPVAEVVLRPRSLVVFREEAYLDHLHAIAASHSDEVGAA---------APVANLESAGARLGEVIARPAVRLSLTFRHI 302          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A835ZDT2_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT2_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.120e-56
Identity = 112/241 (46.47%), Postives = 141/241 (58.51%), Query Frame = 1
Query:  232 QYMRVGDTPTIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQ---PGESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPR-LAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRRISADAGSAARVGDK 942
            Q  R G  P+++Y PDF++ +   +I+ + YA          W  LRTRRL+CWGGQ    G +  P  L PW++ LC  LV  G+F     PNHVL+NEYQPGQGIM HTDGP Y PRTATLSL SDAV   + R  +P D+G   V+  P  +L+LR R LVVFAD AY++  H ID V EE VG     GSG   + V   EA    E  ++ R LR+SLTFR +      AAR G +
Sbjct:   11 QSHRTGTIPSVYYNPDFVTASLADEIIKQVYAVP---EGHARWTVLRTRRLQCWGGQLQADGRAHDPSDLCPWLQQLCTLLVTCGIFPAHAPPNHVLINEYQPGQGIMPHTDGPMYYPRTATLSLMSDAVFKLAQRPRSPGDIG--SVDLSPTEALLLRNRSLVVFADAAYTDFTHGIDFVHEEAVGD----GSGGTCSVVNGPEAGVAEEEVVVERALRISLTFRHVP----DAARTGQQ 238          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A4D9DGD1_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DGD1_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.650e-56
Identity = 106/227 (46.70%), Postives = 139/227 (61.23%), Query Frame = 1
Query:  247 GDTPTIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGE---SFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAE--MPEGTLLRRKLRVSLTFRRISAD 912
            G    +FYVP++IS+  EQ+I+   ++  V     N+WV LR RRL+C+GG+P E   SF+ E LPPW+  +C +L++ GVF EE  PNHVLLNEY+PGQGIMAH DGPFY  R A +SLG  A+  F  RL   ++     ES P  ++VL  R L+VF  EAY + LH I AV EE VG         G  PV+N E  E  +  G  L+R LR+SLT RR+  +
Sbjct:  129 GPPDGVFYVPEYISKEMEQEIMEVAHSMPV-----NQWVKLRGRRLQCFGGKPTENVRSFQSEALPPWIGQVCRTLMLAGVFDEEIIPNHVLLNEYEPGQGIMAHADGPFYHSRVAIISLGGPAIFRFKRRLIAEEISADSQESGPAGTVVLEPRSLIVFEGEAYHDYLHEIAAVEEEVVGGTE------GTTPVLNLERLEGRINVGDRLKRALRLSLTCRRVKEE 344          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A7S2G3H8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3H8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 4.620e-50
Identity = 91/187 (48.66%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  358 WVSLRTRRLKCWGGQPGE--SFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRK-LRVSLTFRRISA 909
            W+SL  RR++CWGGQP E   F PEPLPPW+  +C +LV  GVF  E RPNHVL+NEY  G+GI+ H+DGP Y P+TATLSLG  A+M F PR++  D+G   V S P   ++LR R LVVF D AY + +H+I +   + VGS         RA  IN   +    G +++R  +RVSLTFR ++A
Sbjct:   16 WISLSGRRVQCWGGQPNERTKFVPEPLPPWLVDICTALVDAGVFPSEVRPNHVLINEYANGEGILPHSDGPMYFPKTATLSLGGSAIMTFEPRISSGDIGE--VSSDPICEVILRPRSLVVFEDAAYIDYMHAIASRQTDQVGS---------RAVPINLALSGARHGEMVQRPAIRVSLTFRHVTA 191          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A7S0PB53_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PB53_CAFRO)

HSP 1 Score: 164 bits (415), Expect = 4.370e-44
Identity = 102/224 (45.54%), Postives = 128/224 (57.14%), Query Frame = 1
Query:  277 DFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESFR---PEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPG---VESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLL-RRKLRVSLTFRRISADAGSAA 927
            +F+S A E  +L R   + V   AS  WV LR RRL  +GG P    R    EPLPPW+ A+ D LV  G F E+ RPNHVL+N Y PG+GI+ HTDGP Y P TATLSLGSDAVM F+PR+    VG      +E+       L  R LVVF+DEAY++ LH + AVGE  V            A  +N  +    EG+L+ R  LRVSLT R + A  G+ +
Sbjct:  103 EFLSAACEADLL-RCVLSPVY-EASGRWVRLRGRRLLQFGGTPMPGPRLLGREPLPPWLGAVVDRLVATGAFPEDKRPNHVLVNAYGPGEGILPHTDGPLYFPCTATLSLGSDAVMRFAPRVPSELVGTSSQSHLEAAKSFDAGLARRSLVVFSDEAYTSALHDVAAVGEHRV-----------TAKCLNAASLGWAEGSLIPRAPLRVSLTMRHVPAVKGATS 313          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A226EQ42_FOLCA (Alpha-ketoglutarate-dependent dioxygenase alkB 6 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226EQ42_FOLCA)

HSP 1 Score: 155 bits (392), Expect = 8.800e-42
Identity = 90/235 (38.30%), Postives = 124/235 (52.77%), Query Frame = 1
Query:  235 YMRVGDTPTIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPG-ESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRRISADAGSAARVG 936
            Y   G  P+IFYVP+FISE DE  +LA+ Y          +W  L  RRL+ WGG P       E LPPW+K   D +    +F     PNHVL+NEY+PGQGIM H DG  + P   T++LGS ++++F   L+      P  + R + SL+L  R L+V  DE Y+N LH ID   ++ V  +           VIN+++A +  G  L R  RVSLT R +     +  R+G
Sbjct:    6 YKVEGGPPSIFYVPNFISEEDETVLLAKIYQAP-----KPKWTVLTNRRLQNWGGLPHPRGMIAEKLPPWLKKYVDDIAELNLF-NGKLPNHVLVNEYRPGQGIMPHLDGSLFHPTITTINLGSHSIINFYTPLSNVSKEVPDYKQRLRFSLMLEPRSLLVLQDECYNNYLHGIDETTKDVVSES-----------VINSKSAHVTVGQELDRGTRVSLTIRFVPRTTKAPIRIG 223          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A2R5GWX9_9STRA (Alpha-ketoglutarate-dependent dioxygenase alkB-like 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWX9_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.470e-40
Identity = 85/212 (40.09%), Postives = 119/212 (56.13%), Query Frame = 1
Query:  262 IFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFR 897
            ++Y+P+F +  +   +L +TY+       +  W  +R+RRL+C        +R   +PPW+  L  SLV  G+F+   RPNH LLNEY+PGQGI+ HTDGP Y    A +SLGS A   F+ RL   ++G    E+R  A+L+L+ R LVVFA +AY   LHS+ A+ EE V            A V N EAA+   G  + R  RVS+T R
Sbjct:   92 VWYIPNFCTVEEHDDMLEQTYSK------AASWKDIRSRRLQC--------YREPEMPPWLDTLASSLVQAGIFSPAQRPNHALLNEYEPGQGILGHTDGPVYHSLVACISLGSPATFRFTERLLTDEIGVR--EARELATLLLQPRSLVVFAADAYREALHSVPALLEEVVS-----------ADVANIEAAQASVGDRIPRTTRVSITMR 276          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A3Q2DRJ9_CYPVA (AlkB homolog 6 n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DRJ9_CYPVA)

HSP 1 Score: 149 bits (375), Expect = 3.620e-39
Identity = 93/237 (39.24%), Postives = 124/237 (52.32%), Query Frame = 1
Query:  202 PVLEMDKARFQYMRVGDTP-TIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPG-ESFRPEPLPPWVKALCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGVE-SRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRRI 903
            PVLE D  RF   RV + P T+FYVPDF+S  +E  +L R Y +        +W  L  RRL+ WGG P       E +P W++ LC+ +   G F   NR NHVL+NEY PGQGIM H DGP Y P  +T+SLGS  ++ F   ++  +   P  + +R   SL+LR R L+V  D+ Y N  H I     +T+              V+N  AA+   G  L R  RVSLT R +
Sbjct:    6 PVLE-DLERF---RVPEAPQTVFYVPDFVSPEEESFLLERVYRSP-----RTKWTQLSGRRLQNWGGLPHPRGMMAEEVPDWLQNLCEKISSLGAFGG-NRANHVLVNEYGPGQGIMPHQDGPLYHPTVSTVSLGSHTLLDFYRPVSGLEGAEPQTQQNRYLFSLLLRPRSLLVLQDDMYQNLQHGIQERDRDTL-----------TRQVLNLSAAQARSGETLLRGTRVSLTIRHV 221          
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Match: A0A044TLN5_ONCVO (Fe2OG dioxygenase domain-containing protein n=3 Tax=Onchocerca TaxID=6281 RepID=A0A044TLN5_ONCVO)

HSP 1 Score: 148 bits (373), Expect = 6.750e-39
Identity = 89/230 (38.70%), Postives = 124/230 (53.91%), Query Frame = 1
Query:  229 FQYMRVGDTP-TIFYVPDFISEADEQQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESF--RPEPLPPWVKALCDSLV-IRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLGSDAVMHFSPRLAPADVGRPGV-ESRPQASLVLRARCLVVFADEAYSNQLHSIDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRRI 903
            F       TP TI Y+PDFI+E +E+  L++ Y+         +W  L  RRL+ WGG  G+ F  R   +PPW+ ++ D ++ + G F  + RPNHVL+NEY PGQGIMAHTDG  + P   T+SLGSD V+ +     P D  R  + E R   S+ L  R LVV +D+AY+N LH I     + + S            + N E+     G ++ R LRVSLT R +
Sbjct:    7 FDRFMARKTPATIRYIPDFIAEEEEKFFLSKIYSVP-----KPKWQQLLNRRLQNWGGIVGKEFLIRDSVIPPWLDSVIDKIMALGGTFPPDRRPNHVLINEYLPGQGIMAHTDGSAFYPMVTTISLGSDVVVDY---YKPIDPKRNNIKEERYLGSIFLEQRSLVVVSDDAYANCLHEIADRPFDVITS-----------HIFNLESINRRIGEVMNRDLRVSLTIRNV 217          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5596.13915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNG9_ECTSI4.570e-12664.05Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2G6U9_9STRA9.550e-5750.00Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A835ZDT2_9STRA1.120e-5646.47Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A4D9DGD1_9STRA1.650e-5646.70Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A7S2G3H8_9STRA4.620e-5048.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0PB53_CAFRO4.370e-4445.54Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A226EQ42_FOLCA8.800e-4238.30Alpha-ketoglutarate-dependent dioxygenase alkB 6 n... [more]
A0A2R5GWX9_9STRA2.470e-4040.09Alpha-ketoglutarate-dependent dioxygenase alkB-lik... [more]
A0A3Q2DRJ9_CYPVA3.620e-3939.24AlkB homolog 6 n=2 Tax=Cyprinodon TaxID=28741 RepI... [more]
A0A044TLN5_ONCVO6.750e-3938.70Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5596contigL-elsbetiae_contig5596:8448..11449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue9e-101
Seed eggNOG ortholog2880.D7FNG9
KEGG koko:K10768
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ferrous iron binding
EggNOG OGsKOG3200@1,KOG3200@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-01_005500.1
Exons3
Model size1142
Cds size960
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5596.13915.1prot_L-elsbetiae_contig5596.13915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5596 8630..11449 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816592.086391-UTR-L-elsbetiae_contig5596:8447..86291622816592.086391-UTR-L-elsbetiae_contig5596:8447..8629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 8448..8629 -
1691683669.9701102-UTR-L-elsbetiae_contig5596:8447..86291691683669.9701102-UTR-L-elsbetiae_contig5596:8447..8629Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5596 8448..8629 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816592.0981548-CDS-L-elsbetiae_contig5596:8629..90691622816592.0981548-CDS-L-elsbetiae_contig5596:8629..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 8630..9069 -
1691683669.980763-CDS-L-elsbetiae_contig5596:8629..90691691683669.980763-CDS-L-elsbetiae_contig5596:8629..9069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 8630..9069 -
1622816592.1086705-CDS-L-elsbetiae_contig5596:9886..101691622816592.1086705-CDS-L-elsbetiae_contig5596:9886..10169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 9887..10169 -
1691683669.9896796-CDS-L-elsbetiae_contig5596:9886..101691691683669.9896796-CDS-L-elsbetiae_contig5596:9886..10169Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 9887..10169 -
1622816592.1198325-CDS-L-elsbetiae_contig5596:11212..114491622816592.1198325-CDS-L-elsbetiae_contig5596:11212..11449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 11213..11449 -
1691683669.9990478-CDS-L-elsbetiae_contig5596:11212..114491691683669.9990478-CDS-L-elsbetiae_contig5596:11212..11449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5596 11213..11449 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5596.13915.1

>prot_L-elsbetiae_contig5596.13915.1 ID=prot_L-elsbetiae_contig5596.13915.1|Name=mRNA_L-elsbetiae_contig5596.13915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=320bp
MTSLDFQSLLKQEKALRQAELEQQHAQDKKIDSLEADNTARQAKVVAKPR
HDDQTEPSPWFVELAERPVLEMDKARFQYMRVGDTPTIFYVPDFISEADE
QQILARTYATDVRANASNEWVSLRTRRLKCWGGQPGESFRPEPLPPWVKA
LCDSLVIRGVFAEENRPNHVLLNEYQPGQGIMAHTDGPFYQPRTATLSLG
SDAVMHFSPRLAPADVGRPGVESRPQASLVLRARCLVVFADEAYSNQLHS
IDAVGEETVGSASDGGSGSGRAPVINTEAAEMPEGTLLRRKLRVSLTFRR
ISADAGSAARVGDKDADVG*
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mRNA from alignment at L-elsbetiae_contig5596:8448..11449-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5596.13915.1 ID=mRNA_L-elsbetiae_contig5596.13915.1|Name=mRNA_L-elsbetiae_contig5596.13915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3002bp|location=Sequence derived from alignment at L-elsbetiae_contig5596:8448..11449- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGTCTTGACTTTCAAAGCCTTCTCAAACAAGAAAAGGCACTGCG ACAGGCCGAGCTCGAACAACAGCATGCTCAAGATAAGAAAATTGATTCCC TCGAGGCCGACAACACGGCACGACAAGCCAAGGTGGTTGCAAAGCCACGG CACGATGATCAGACAGAGCCATCGCCGTGGTTTGTGGAGCTTGCAGAGCG GCCAGTGCTGGAAATGGACAAGGCGAGATTTCAGTACGTGCTCGTGGATG TTTCTTCAAGGTTCTCCAGGATAACTCGCTGTAGTGTAAGACTGTTGTGT GGAACAGAAACCTGCCTTATTTTTTATTTATATTTAACCCCGCCGTCCAT ACTGGATATGTAGTCTAGTCAGTTCATACATACCGCTGGGTATGACGTAG CGTTATTGCAATGCGAGAGAGTGCTTCGTGTTGGTGCTTGGAAATTTGGT GTCGTCCACACGTCTACATACATCATTGATGCAGAGACCTTTTCCTCCGA ACGCGGGGGAAATCGTTTCTCGGCATACTTGGCAGCCTTGCTGCTTGTTT ATGCAGTGAGCCACTCACCCGTTTGTCGTTGATGAATGTGCAAGCGAGGA GTGTTGTCAAGTTGCGGATGAAGAACTTTTTTACATGGTGACTACATTCT TGAGCCATTCAAGGGCGTTCTGTTGATCGTTTTTCTGTCTTCCGAAGATG GACGGAGTTCGTGTGTGTAGACTAATAAAGTCTTGCTCCGGCCCGAACAG AAATCCGCGCTGTTTATGCCGGATGAGGTGGCTTGATCCTGTAGCTTGTC CGGGCTTGTGCCAGGAAGTAAGATTATCTCTGCAAGTGCAGAAGTAGAGG GACTGGTTGAACCAGTTTGAATAAGCCCTTTAATTCAAACTGCTGGCACT CTGGACTGTATTGCCTGAGGTAGTTTTATGCCTCTGAGCGAGCTAGGTAC GTTGTTGAGACCATGAGGAAGGAGGGGAAGTTGGGAGTTTGAGCCCGGTA GGGCTCTTGTGCACCTCGCGATCTCGATACGATCACAAATCAGCAAACGA GCTCTTCGCTACAAACTCTCCGTTATGTATGTATCTAGTATCAACGATCG ATTGTTTTACTAAACTACTCTACTGTGCATCATTGGAAGAGCGTTATCTG GGCATGCCCCACGGCAGCCTCACGCTGCATTTCAACAGGTTTGTTGGTGG TGCCACTTTACCACAATGGGCGGGCTAGATCACCGGTTGATCACCCCGCT GCTGCATACTGAACTATGCCGTGCGCGCAGATGCGAGTAGGTGACACACC TACGATTTTCTACGTGCCCGATTTCATCTCGGAGGCAGACGAGCAACAGA TATTGGCGAGAACATACGCCACAGACGTCAGAGCAAACGCGAGCAATGAA TGGGTCTCGCTGAGAACTCGACGATTGAAGTGCTGGGGGGGGCAGCCGGG GGAAAGCTTCCGCCCCGAGCCGCTGCCGCCGTGGGTTAAAGCGTTGTGCG ATTCGCTCGTGATCCGGGGAGTTTTCGCTGAGGAGAACCGACCAAATCAC GTTCTGCTCAATGGTGAGTGAGGATGAAAGGATACGGTTTACTTGGTCAA CATACAACTATGATTTTGTGAGAGAGAGAGCGATGTAAAATGAAGGCTTC GGCAATCTGCACATTGCCGCGCCGCGGCCATACAGTTGAGTCCCGGAGAA AGAAAAGCGTCAATTTCGAGTCCAAGCTCAAAGTCTTACTTTCGGGAGCG AACACCGGCATCAGAGTAATGTCCCTTGATTGGAACGAGTTTCTTGTATA TTTCTCGGCTTTTCGGCTGCCGGAAACTGCTTGTTTCCTTCTTTCTTTGG CCTTCTTCGCCGTGTTCTTGTCCGTATGGGACCTCAAGTGCTGTTTCTTA ATTTCCCCGTTGGGTCGTTGATAACCATCTCCTCCCTTGCATGGAAGAGG CCCCCAGCCGCCAAACAGGAAACACACGTTCGGGAGGGGAGGGCTTTACA AAAACGGTGTAGTTCACCACCCAGCGTTTCTTGTTCGGCAAGAGCCCCCC ACGTTCCATGAGTCTTCTCATTTTTCACACCTCTTTTTGGGCACGTGCTT GCCGTTCTTATGTAGAATGTTTCTCTCTTTTGCCCCGGGTCTGACGTGTG TGTCTGAAGTCAAATGTTCTTCTCGCGGAAATCCTGAGGGTATGCTTCTT AATCCCGGGCCGCAACTATCTAGATACTACGTTGTTTGTCGAGTAACGGC TGCATAAGCAAACAGCTGTTCAACCCACCGGCTGGTTGGTACTCTGCCAG ATTCGTTCTGCACGCCCCCCTCCGCGCATTTTCACTAACGCGGTCCCACT TTGTCCCGGGCAAATATTTATCTTCTCCAGAGTATCAACCGGGCCAAGGG ATCATGGCTCACACCGACGGACCCTTTTACCAACCCCGCACCGCCACCCT CAGCTTGGGGAGCGACGCCGTTATGCACTTCTCGCCCCGATTGGCACCGG CCGACGTCGGGCGACCGGGCGTAGAGAGCCGACCCCAGGCATCTCTGGTG CTGAGGGCGCGCTGTCTGGTGGTCTTCGCCGACGAGGCGTACTCCAACCA GCTGCACAGCATAGACGCTGTGGGGGAGGAGACGGTGGGCAGCGCCAGCG ACGGCGGTAGCGGCAGTGGCCGTGCACCAGTCATCAACACGGAGGCCGCG GAGATGCCGGAGGGGACCCTCCTGAGACGGAAGCTGAGAGTGTCGCTCAC CTTCAGGAGGATCAGTGCTGATGCGGGTTCGGCTGCCAGGGTTGGAGACA AGGATGCTGACGTGGGCTAGTGTAGAGAGAGGCGGGAGATTGTTGCAGTT TGGAGGGTTTGAGAAAACCAGGTGCCGTGTCAGCTGGAGGCTTCTCCTCG TTATAATACCATTTGTTTAATTTAATGGCGTGAGAAACACCGGCTTCGTG CATATGATAGACCTTGTCGCCTTTGTTGTGAAGTAAAACGTATTTGATTG GT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5596:8448..11449-

>mRNA_L-elsbetiae_contig5596.13915.1 ID=mRNA_L-elsbetiae_contig5596.13915.1|Name=mRNA_L-elsbetiae_contig5596.13915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1920bp|location=Sequence derived from alignment at L-elsbetiae_contig5596:8448..11449- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAAGTCTTGACTTTCAAAGCCTTCTCAAACAAGAAAAGGCACTGCG
ACAGGCCGAGCTCGAACAACAGCATGCTCAAGATAAGAAAATTGATTCCC
TCGAGGCCGACAACACGGCACGACAAGCCAAGGTGGTTGCAAAGCCACGG
CACGATGATCAGACAGAGCCATCGCCGTGGTTTGTGGAGCTTGCAGAGCG
GCCAGTGCTGGAAATGGACAAGGCGAGATTTCAGTACATGACAAGTCTTG
ACTTTCAAAGCCTTCTCAAACAAGAAAAGGCACTGCGACAGGCCGAGCTC
GAACAACAGCATGCTCAAGATAAGAAAATTGATTCCCTCGAGGCCGACAA
CACGGCACGACAAGCCAAGGTGGTTGCAAAGCCACGGCACGATGATCAGA
CAGAGCCATCGCCGTGGTTTGTGGAGCTTGCAGAGCGGCCAGTGCTGGAA
ATGGACAAGGCGAGATTTCAGTACATGCGAGTAGGTGACACACCTACGAT
TTTCTACGTGCCCGATTTCATCTCGGAGGCAGACGAGCAACAGATATTGG
CGAGAACATACGCCACAGACGTCAGAGCAAACGCGAGCAATGAATGGGTC
TCGCTGAGAACTCGACGATTGAAGTGCTGGGGGGGGCAGCCGGGGGAAAG
CTTCCGCCCCGAGCCGCTGCCGCCGTGGGTTAAAGCGTTGTGCGATTCGC
TCGTGATCCGGGGAGTTTTCGCTGAGGAGAACCGACCAAATCACGTTCTG
CTCAATGATGCGAGTAGGTGACACACCTACGATTTTCTACGTGCCCGATT
TCATCTCGGAGGCAGACGAGCAACAGATATTGGCGAGAACATACGCCACA
GACGTCAGAGCAAACGCGAGCAATGAATGGGTCTCGCTGAGAACTCGACG
ATTGAAGTGCTGGGGGGGGCAGCCGGGGGAAAGCTTCCGCCCCGAGCCGC
TGCCGCCGTGGGTTAAAGCGTTGTGCGATTCGCTCGTGATCCGGGGAGTT
TTCGCTGAGGAGAACCGACCAAATCACGTTCTGCTCAATGAGTATCAACC
GGGCCAAGGGATCATGGCTCACACCGACGGACCCTTTTACCAACCCCGCA
CCGCCACCCTCAGCTTGGGGAGCGACGCCGTTATGCACTTCTCGCCCCGA
TTGGCACCGGCCGACGTCGGGCGACCGGGCGTAGAGAGCCGACCCCAGGC
ATCTCTGGTGCTGAGGGCGCGCTGTCTGGTGGTCTTCGCCGACGAGGCGT
ACTCCAACCAGCTGCACAGCATAGACGCTGTGGGGGAGGAGACGGTGGGC
AGCGCCAGCGACGGCGGTAGCGGCAGTGGCCGTGCACCAGTCATCAACAC
GGAGGCCGCGGAGATGCCGGAGGGGACCCTCCTGAGACGGAAGCTGAGAG
TGTCGCTCACCTTCAGGAGGATCAGTGCTGATGCGGGTTCGGCTGCCAGG
GTTGGAGACAAGGATGCTGACGTGGGCTAGAGTATCAACCGGGCCAAGGG
ATCATGGCTCACACCGACGGACCCTTTTACCAACCCCGCACCGCCACCCT
CAGCTTGGGGAGCGACGCCGTTATGCACTTCTCGCCCCGATTGGCACCGG
CCGACGTCGGGCGACCGGGCGTAGAGAGCCGACCCCAGGCATCTCTGGTG
CTGAGGGCGCGCTGTCTGGTGGTCTTCGCCGACGAGGCGTACTCCAACCA
GCTGCACAGCATAGACGCTGTGGGGGAGGAGACGGTGGGCAGCGCCAGCG
ACGGCGGTAGCGGCAGTGGCCGTGCACCAGTCATCAACACGGAGGCCGCG
GAGATGCCGGAGGGGACCCTCCTGAGACGGAAGCTGAGAGTGTCGCTCAC
CTTCAGGAGGATCAGTGCTGATGCGGGTTCGGCTGCCAGGGTTGGAGACA
AGGATGCTGACGTGGGCTAG
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