mRNA_L-elsbetiae_contig5583.13901.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5583.13901.1
Unique NamemRNA_L-elsbetiae_contig5583.13901.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5583.13901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5583contigL-elsbetiae_contig5583:6748..8190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size525
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5583.13901.1prot_L-elsbetiae_contig5583.13901.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5583 6779..8143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.7184231-UTR-L-elsbetiae_contig5583:6747..67781622816590.7184231-UTR-L-elsbetiae_contig5583:6747..6778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 6748..6778 +
1691683668.954566-UTR-L-elsbetiae_contig5583:6747..67781691683668.954566-UTR-L-elsbetiae_contig5583:6747..6778Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 6748..6778 +
1622816590.7662497-UTR-L-elsbetiae_contig5583:8143..81901622816590.7662497-UTR-L-elsbetiae_contig5583:8143..8190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 8144..8190 +
1691683669.003263-UTR-L-elsbetiae_contig5583:8143..81901691683669.003263-UTR-L-elsbetiae_contig5583:8143..8190Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5583 8144..8190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.730117-CDS-L-elsbetiae_contig5583:6778..68591622816590.730117-CDS-L-elsbetiae_contig5583:6778..6859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 6779..6859 +
1691683668.9700878-CDS-L-elsbetiae_contig5583:6778..68591691683668.9700878-CDS-L-elsbetiae_contig5583:6778..6859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 6779..6859 +
1622816590.7420173-CDS-L-elsbetiae_contig5583:7238..74661622816590.7420173-CDS-L-elsbetiae_contig5583:7238..7466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 7239..7466 +
1691683668.9820197-CDS-L-elsbetiae_contig5583:7238..74661691683668.9820197-CDS-L-elsbetiae_contig5583:7238..7466Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 7239..7466 +
1622816590.754779-CDS-L-elsbetiae_contig5583:8005..81431622816590.754779-CDS-L-elsbetiae_contig5583:8005..8143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 8006..8143 +
1691683668.9947278-CDS-L-elsbetiae_contig5583:8005..81431691683668.9947278-CDS-L-elsbetiae_contig5583:8005..8143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5583 8006..8143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5583.13901.1

>prot_L-elsbetiae_contig5583.13901.1 ID=prot_L-elsbetiae_contig5583.13901.1|Name=mRNA_L-elsbetiae_contig5583.13901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MFINPTFSALKALNRSGSLGPNVTLLQNLPMLEEVRTMLCADGLAVSRDS
LHLLTFAHARAQTLFVPSACGTGASSSGNRAQHREQSVLSNTILVVLEKP
WAEVYGIEWSPEEGAYSPYEKWEGTKPQLLEMLLFKGVRGLKRCGIDD*
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mRNA from alignment at L-elsbetiae_contig5583:6748..8190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5583.13901.1 ID=mRNA_L-elsbetiae_contig5583.13901.1|Name=mRNA_L-elsbetiae_contig5583.13901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1443bp|location=Sequence derived from alignment at L-elsbetiae_contig5583:6748..8190+ (Laminarionema elsbetiae ELsaHSoW15)
GACCGTCCTAACGTCCACCAGGCGGAGGGACATGTTTATCAACCCGACCT
TCTCGGCGCTCAAGGCGCTCAACCGGTCCGGGTCGCTGGGACCGAACGTC
ACGCTGCTCCAGGTGAGGTGGTTGGTACGTGGATGCACGTGTGCCGAGTT
TTTTTAGAGATGAGTTGGCGGTGCCGTAGGTTCGGTGTGAGAGGAGACCG
TGTGCCTGAGGGTCAATAGGTTGCTTGCTCCCTGTGTGACCCCTCCTCAC
GTGTGTATTCAGTTCCATGGGGAAGCCTCTCTTCCTTCGCTAACAACGTG
TTCCTGGAGCAACAGGCAAGCCAGAAAGGGCAAAAACCTGGTTAATTAAC
GTCGGGGTTTGGTTCTACGGAGATTGCACTTTTTTGCCTCGATCTTCATA
ATCCAACCTCCTCGAAACCAATGCTCTGGAACACACGTACGTACATGCGT
AAATGCATACCATATATATGTACGTATTGCACGAAACACAGAACCTGCCG
ATGCTGGAAGAGGTGAGGACCATGCTGTGCGCGGACGGCCTGGCCGTGTC
CCGGGACAGCCTGCACCTGCTCACCTTCGCGCACGCCCGGGCCCAGACGC
TCTTCGTGCCCTCCGCCTGCGGCACGGGTGCCTCCAGCAGCGGGAACCGC
GCCCAGCACCGCGAGCAGTCGGTCCTCAGCAACACTATTCTCGTCGTCCT
CGAGAAGCCTTGGGCCGAGGTAGGTAACGCATGCAGATATGTGCATATAT
CTGCCTGCCTCTGCCTGTCTGTCTGTCTGTCTGCCTCTCTCTCTCTCTCT
CTCTCTCTCTTGTTCCCCCTCCTTGTGCGCGTCGCGACATCGGGAGCAGG
GTGTTGTTGTCGTTGATGATGATGATGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGATGATGATGATGATGTTGTTGTCGGTTTTGA
TGATGATGATGATGTTATTGTTTGGTGTGCTTGTGGTATTATTAATCGAA
TCGGCTCAAAAATGGAGAGGAGGGGGAAATAGTCCGCAAGCACGTGTCCC
CGAAACACGGCACACCGCAGCCACCCGCAAATCAATGCATCGCGGGCGTC
GGTCTCAACCTTCGACATATTCTCGGCCAACGGAAAGAAAACGCAAGCGC
GAGAGACGAACAAACACCTGCGCCCCCCGATGCTCAGAAACGTAAAATAT
CCCCCACGTTATGTAGACTACATGTGTGTCTATCTATGTACTTCATACAT
ACTTCTAGGTCTACGGGATCGAGTGGTCGCCAGAGGAAGGGGCATACAGC
CCGTACGAGAAGTGGGAAGGCACTAAGCCACAGCTGCTGGAGATGCTGCT
GTTCAAGGGTGTCCGGGGGCTGAAACGATGCGGCATCGACGACTGACTGA
TTAGATCGACTGAGACTCGTCAAGAATACCGGTTTTGTACTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5583:6748..8190+

>mRNA_L-elsbetiae_contig5583.13901.1 ID=mRNA_L-elsbetiae_contig5583.13901.1|Name=mRNA_L-elsbetiae_contig5583.13901.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig5583:6748..8190+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTATCAACCCGACCTTCTCGGCGCTCAAGGCGCTCAACCGGTCCGG
GTCGCTGGGACCGAACGTCACGCTGCTCCAGATGTTTATCAACCCGACCT
TCTCGGCGCTCAAGGCGCTCAACCGGTCCGGGTCGCTGGGACCGAACGTC
ACGCTGCTCCAGAACCTGCCGATGCTGGAAGAGGTGAGGACCATGCTGTG
CGCGGACGGCCTGGCCGTGTCCCGGGACAGCCTGCACCTGCTCACCTTCG
CGCACGCCCGGGCCCAGACGCTCTTCGTGCCCTCCGCCTGCGGCACGGGT
GCCTCCAGCAGCGGGAACCGCGCCCAGCACCGCGAGCAGTCGGTCCTCAG
CAACACTATTCTCGTCGTCCTCGAGAAGCCTTGGGCCGAGAACCTGCCGA
TGCTGGAAGAGGTGAGGACCATGCTGTGCGCGGACGGCCTGGCCGTGTCC
CGGGACAGCCTGCACCTGCTCACCTTCGCGCACGCCCGGGCCCAGACGCT
CTTCGTGCCCTCCGCCTGCGGCACGGGTGCCTCCAGCAGCGGGAACCGCG
CCCAGCACCGCGAGCAGTCGGTCCTCAGCAACACTATTCTCGTCGTCCTC
GAGAAGCCTTGGGCCGAGGTCTACGGGATCGAGTGGTCGCCAGAGGAAGG
GGCATACAGCCCGTACGAGAAGTGGGAAGGCACTAAGCCACAGCTGCTGG
AGATGCTGCTGTTCAAGGGTGTCCGGGGGCTGAAACGATGCGGCATCGAC
GACTGAGTCTACGGGATCGAGTGGTCGCCAGAGGAAGGGGCATACAGCCC
GTACGAGAAGTGGGAAGGCACTAAGCCACAGCTGCTGGAGATGCTGCTGT
TCAAGGGTGTCCGGGGGCTGAAACGATGCGGCATCGACGACTGA
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