mRNA_L-elsbetiae_contig5581.13898.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5581.13898.1
Unique NamemRNA_L-elsbetiae_contig5581.13898.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5581.13898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5581contigL-elsbetiae_contig5581:8658..9236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.5554478-UTR-L-elsbetiae_contig5581:8657..88911622816590.5554478-UTR-L-elsbetiae_contig5581:8657..8891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5581 8658..8891 +
1691683668.8720915-UTR-L-elsbetiae_contig5581:8657..88911691683668.8720915-UTR-L-elsbetiae_contig5581:8657..8891Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5581 8658..8891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816590.5715883-CDS-L-elsbetiae_contig5581:8891..92361622816590.5715883-CDS-L-elsbetiae_contig5581:8891..9236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5581 8892..9236 +
1691683668.8831515-CDS-L-elsbetiae_contig5581:8891..92361691683668.8831515-CDS-L-elsbetiae_contig5581:8891..9236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5581 8892..9236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5581.13898.1prot_L-elsbetiae_contig5581.13898.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5581 8892..9236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5581.13898.1

>prot_L-elsbetiae_contig5581.13898.1 ID=prot_L-elsbetiae_contig5581.13898.1|Name=mRNA_L-elsbetiae_contig5581.13898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MNFLCSGRREPYLGLRVGQSCSGHSAPRLRRGGGVFGVKFRDVAGALSVS
GISVMLLVLHTTLRRFVVKSSIFFFVKLLQVGNLKAIFQAAVARCSRSTT
RESGVHSCAGADTP*
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mRNA from alignment at L-elsbetiae_contig5581:8658..9236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5581.13898.1 ID=mRNA_L-elsbetiae_contig5581.13898.1|Name=mRNA_L-elsbetiae_contig5581.13898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=579bp|location=Sequence derived from alignment at L-elsbetiae_contig5581:8658..9236+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTTGGGTTCTATATTTAGTAATTGAGTTGGCCAATGTCGTGGATAGGA
AAATACGCGACTCGAAGGCACGGCAGCAGGAAGGAGAATAGGGCGGGTGG
ATCTCTGGGTATACGGGGTCGTGGGCAAGTCATGGTGTGCCCCAGAAAGT
GCGAAAGCTCTGCATAGCGCCGATGACCTGTTGACTGCGCACCGCTGTGC
CTGCGTTCTTGGGCCGCTCCGCTGGTGAAGTGGTATGAATTTTCTCTGCT
CGGGGCGTAGAGAGCCTTACCTTGGGTTGCGCGTTGGTCAGAGCTGCTCT
GGGCATTCCGCTCCACGCCTGCGGCGGGGTGGGGGCGTGTTTGGAGTCAA
GTTCCGTGACGTGGCAGGGGCTTTGTCTGTGTCGGGCATCTCGGTGATGC
TACTTGTACTACATACGACGTTGCGACGGTTTGTTGTGAAATCGTCGATT
TTTTTTTTCGTCAAGCTTCTTCAGGTTGGAAACCTAAAAGCCATATTTCA
AGCCGCGGTTGCTCGATGTTCCCGCTCAACGACTCGCGAAAGTGGGGTGC
ACAGCTGCGCTGGTGCAGACACCCCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5581:8658..9236+

>mRNA_L-elsbetiae_contig5581.13898.1 ID=mRNA_L-elsbetiae_contig5581.13898.1|Name=mRNA_L-elsbetiae_contig5581.13898.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig5581:8658..9236+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTTTCTCTGCTCGGGGCGTAGAGAGCCTTACCTTGGGTTGCGCGT
TGGTCAGAGCTGCTCTGGGCATTCCGCTCCACGCCTGCGGCGGGGTGGGG
GCGTGTTTGGAGTCAAGTTCCGTGACGTGGCAGGGGCTTTGTCTGTGTCG
GGCATCTCGGTGATGCTACTTGTACTACATACGACGTTGCGACGGTTTGT
TGTGAAATCGTCGATTTTTTTTTTCGTCAAGCTTCTTCAGGTTGGAAACC
TAAAAGCCATATTTCAAGCCGCGGTTGCTCGATGTTCCCGCTCAACGACT
CGCGAAAGTGGGGTGCACAGCTGCGCTGGTGCAGACACCCCCTGAATGAA
TTTTCTCTGCTCGGGGCGTAGAGAGCCTTACCTTGGGTTGCGCGTTGGTC
AGAGCTGCTCTGGGCATTCCGCTCCACGCCTGCGGCGGGGTGGGGGCGTG
TTTGGAGTCAAGTTCCGTGACGTGGCAGGGGCTTTGTCTGTGTCGGGCAT
CTCGGTGATGCTACTTGTACTACATACGACGTTGCGACGGTTTGTTGTGA
AATCGTCGATTTTTTTTTTCGTCAAGCTTCTTCAGGTTGGAAACCTAAAA
GCCATATTTCAAGCCGCGGTTGCTCGATGTTCCCGCTCAACGACTCGCGA
AAGTGGGGTGCACAGCTGCGCTGGTGCAGACACCCCCTGA
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