mRNA_L-elsbetiae_contig5577.13893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5577.13893.1
Unique NamemRNA_L-elsbetiae_contig5577.13893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Match: D8LN65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN65_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.150e-28
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 3 
Query:  186 LVFR*RFSSGLHTVVFHGSGNGTGLVGNCYIREVNQFSMAASVPGLRHSSSASIQYKGSFLMLKMPGMGDPRLRTRLHMRRVHKWAGPLFPDDCETLP 479
            L  + +FS+   TV+FHG GNGTGLVGNCYIRE++ FS  + +PG+R  S    +YKGSFLMLK  GMG  +LR+ +H RRVHKWAG  FPDD   +P
Sbjct:   80 LALQCKFSNECDTVLFHGWGNGTGLVGNCYIREIDPFSAFSGIPGIRQLSRD--KYKGSFLMLKQSGMGGAKLRSMVHTRRVHKWAGACFPDDSVPMP 175
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BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Match: A0A6H5KY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY23_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.130e-7
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 3 
Query:  201 RFSSGLHTVVFHGSGNGTGLVGNCYIREVNQFSMAASV 314
            RFS+ + TV+FHGSGNGTGLVGNCYIRE+++FS  + +
Sbjct:  157 RFSNDVDTVMFHGSGNGTGLVGNCYIRELDRFSSFSQI 194
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5577.13893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN65_ECTSI1.150e-2857.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY23_9PHAE4.130e-765.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5577contigL-elsbetiae_contig5577:11222..12280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size479
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5577.13893.1prot_L-elsbetiae_contig5577.13893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5577 11238..12126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.859942-UTR-L-elsbetiae_contig5577:11221..112371622816589.859942-UTR-L-elsbetiae_contig5577:11221..11237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5577 11222..11237 -
1691683668.3429456-UTR-L-elsbetiae_contig5577:11221..112371691683668.3429456-UTR-L-elsbetiae_contig5577:11221..11237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5577 11222..11237 -
1622816589.8918781-UTR-L-elsbetiae_contig5577:12126..122801622816589.8918781-UTR-L-elsbetiae_contig5577:12126..12280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5577 12127..12280 -
1691683668.3728576-UTR-L-elsbetiae_contig5577:12126..122801691683668.3728576-UTR-L-elsbetiae_contig5577:12126..12280Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5577 12127..12280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.8710046-CDS-L-elsbetiae_contig5577:11237..113931622816589.8710046-CDS-L-elsbetiae_contig5577:11237..11393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5577 11238..11393 -
1691683668.3544683-CDS-L-elsbetiae_contig5577:11237..113931691683668.3544683-CDS-L-elsbetiae_contig5577:11237..11393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5577 11238..11393 -
1622816589.8817585-CDS-L-elsbetiae_contig5577:11973..121261622816589.8817585-CDS-L-elsbetiae_contig5577:11973..12126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5577 11974..12126 -
1691683668.3643253-CDS-L-elsbetiae_contig5577:11973..121261691683668.3643253-CDS-L-elsbetiae_contig5577:11973..12126Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5577 11974..12126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5577.13893.1

>prot_L-elsbetiae_contig5577.13893.1 ID=prot_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MGWGAFVAPFSCLPVKIFEWASYRSVPWIGQRNRACGELLHPRGQPIQHG
SFRAGPATLILGLDPIQGVVSDAQDAGHGRPSAQDTAAHAAGSQVGRPSV
PR*
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mRNA from alignment at L-elsbetiae_contig5577:11222..12280-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5577.13893.1 ID=mRNA_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1059bp|location=Sequence derived from alignment at L-elsbetiae_contig5577:11222..12280- (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGGATTTCTTGTCCTTCGGGGCGCGCGCTCATTTCATAGCTATATC
TTCGCTGACCGAGCTCACGCACGTGTTCCTCTTTTCGCCCAGCCTGCTCC
CCCTCCACTTCTTTTCTCCCCCCTTTCTCCGTTTCTCTGCCTCTGGTTTT
TGCCATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGA
AGATTTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGG
AACCGGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCA
TGGCAGCGTGAGTACCCTGCTGTTTTTTTTATTTTTATGTTGTCGCATTT
GTTGCGTTTGTTGATTTCTGCTGTTGTTGTTGTTGTTGTTGTTGTTGGTG
GTGGTGGTGATGGCGATGGCGATGGTGGTGGTTGTTTTTGTTGGTTGTTG
GTGGTGGGTAGCTTGTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
CGCTGCTGCCGCTGGCGCTGCTGCCGCTGTTGCCAAAGCCGGTCTACCGC
CCGAGGCCAGGAAGCCACGGCCTCTCCCGCCGTACTACTAATGTTTGCTC
ATGCTTCTCTTCTTCCCCCGCACCATCCGCGGGGCCAGGAAGGCACGCCC
CCTTCCGCCGTGCCGACGCGCATGCCTATCCGGCGAATTTTGTTCGTGTG
CTTCTCTCCTTCCCTCGTTCCATTCGCGAGGCCCGGAAGCCATATGCCCC
CTTTCCCAGAGCAAAAAAAAAGCAAAAATCGTTAGACAACAAGAAAGCAA
GCGTGGCCGGCCGACCACGCACTGGCTCGAAACCACGCAACAGCGAAAAC
CCCGTGTTTTTTTTTGCTGCTTGGCCTTGTCCTTCAGTTCCGTGCCGGGC
CTGCGACACTCATCCTCGGCCTCGATCCAATACAAGGGGTCGTTTCTGAT
GCTCAAGATGCCGGGCATGGGAGACCCTCGGCTCAGGACACGGCTGCACA
TGCGGCGGGTTCACAAGTGGGCCGGCCCTCTGTTCCCCGATGATTGTGAG
ACCTTGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5577:11222..12280-

>mRNA_L-elsbetiae_contig5577.13893.1 ID=mRNA_L-elsbetiae_contig5577.13893.1|Name=mRNA_L-elsbetiae_contig5577.13893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig5577:11222..12280- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGAAGAT
TTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGGAACC
GGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCATGGC
AGCATGGGGTGGGGGGCTTTTGTTGCTCCTTTTTCTTGTCTTCCGGTGAA
GATTTTCGAGTGGGCTTCATACCGTAGTGTTCCATGGATCGGGCAACGGA
ACCGGGCTTGTGGGGAACTGTTACATCCGCGAGGTCAACCAATTCAGCAT
GGCAGCTTCCGTGCCGGGCCTGCGACACTCATCCTCGGCCTCGATCCAAT
ACAAGGGGTCGTTTCTGATGCTCAAGATGCCGGGCATGGGAGACCCTCGG
CTCAGGACACGGCTGCACATGCGGCGGGTTCACAAGTGGGCCGGCCCTCT
GTTCCCCGATGATTCCGTGCCGGGCCTGCGACACTCATCCTCGGCCTCGA
TCCAATACAAGGGGTCGTTTCTGATGCTCAAGATGCCGGGCATGGGAGAC
CCTCGGCTCAGGACACGGCTGCACATGCGGCGGGTTCACAAGTGGGCCGG
CCCTCTGTTCCCCGATGA
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