mRNA_L-elsbetiae_contig5573.13885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5573.13885.1
Unique NamemRNA_L-elsbetiae_contig5573.13885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5573.13885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5573contigL-elsbetiae_contig5573:1427..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.1719525-UTR-L-elsbetiae_contig5573:1426..14561622816589.1719525-UTR-L-elsbetiae_contig5573:1426..1456Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 1427..1456 +
1691683667.9319217-UTR-L-elsbetiae_contig5573:1426..14561691683667.9319217-UTR-L-elsbetiae_contig5573:1426..1456Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5573 1427..1456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.1860323-CDS-L-elsbetiae_contig5573:1456..17921622816589.1860323-CDS-L-elsbetiae_contig5573:1456..1792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 1457..1792 +
1691683667.9410434-CDS-L-elsbetiae_contig5573:1456..17921691683667.9410434-CDS-L-elsbetiae_contig5573:1456..1792Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5573 1457..1792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5573.13885.1prot_L-elsbetiae_contig5573.13885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5573 1457..1792 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5573.13885.1

>prot_L-elsbetiae_contig5573.13885.1 ID=prot_L-elsbetiae_contig5573.13885.1|Name=mRNA_L-elsbetiae_contig5573.13885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MEPSPHETAKPPCVSNGIPLSDVILVHQKSRKKHLNYPKNSTSPQVNQHV
YFPGYISEYVQPPSPLLLCPPRLVRLGSAHGAPWCIFIFPCPSPLFLRWR
GRPPPPILAMLR
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mRNA from alignment at L-elsbetiae_contig5573:1427..1792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5573.13885.1 ID=mRNA_L-elsbetiae_contig5573.13885.1|Name=mRNA_L-elsbetiae_contig5573.13885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig5573:1427..1792+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGGTTAAATAGAAATCAGTGAATCAAGAATGGAACCTAGCCCACATGA
GACAGCCAAGCCTCCGTGTGTTTCAAACGGTATTCCATTAAGTGACGTAA
TATTGGTTCACCAGAAGAGTAGAAAAAAACACCTAAACTATCCGAAGAAT
TCAACATCTCCCCAGGTCAACCAACATGTGTATTTTCCGGGTTATATAAG
TGAATATGTTCAGCCACCATCACCACTCTTGTTGTGCCCGCCGCGGCTTG
TACGGCTGGGGTCTGCCCATGGGGCCCCGTGGTGTATCTTTATCTTTCCT
TGCCCCTCTCCCCTATTTTTGCGATGGAGAGGACGCCCCCCACCCCCTAT
ACTTGCGATGTTACGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5573:1427..1792+

>mRNA_L-elsbetiae_contig5573.13885.1 ID=mRNA_L-elsbetiae_contig5573.13885.1|Name=mRNA_L-elsbetiae_contig5573.13885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig5573:1427..1792+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACCTAGCCCACATGAGACAGCCAAGCCTCCGTGTGTTTCAAACGG
TATTCCATTAAGTGACGTAATATTGGTTCACCAGAAGAGTAGAAAAAAAC
ACCTAAACTATCCGAAGAATTCAACATCTCCCCAGGTCAACCAACATGTG
TATTTTCCGGGTTATATAAGTGAATATGTTCAGCCACCATCACCACTCTT
GTTGTGCCCGCCGCGGCTTGTACGGCTGGGGTCTGCCCATGGGGCCCCGT
GGTGTATCTTTATCTTTCCTTGCCCCTCTCCCCTATTTTTGCGATGGAGA
GGACGCCCCCCACCCCCTATACTTGCGATGTTACGAATGGAACCTAGCCC
ACATGAGACAGCCAAGCCTCCGTGTGTTTCAAACGGTATTCCATTAAGTG
ACGTAATATTGGTTCACCAGAAGAGTAGAAAAAAACACCTAAACTATCCG
AAGAATTCAACATCTCCCCAGGTCAACCAACATGTGTATTTTCCGGGTTA
TATAAGTGAATATGTTCAGCCACCATCACCACTCTTGTTGTGCCCGCCGC
GGCTTGTACGGCTGGGGTCTGCCCATGGGGCCCCGTGGTGTATCTTTATC
TTTCCTTGCCCCTCTCCCCTATTTTTGCGATGGAGAGGACGCCCCCCACC
CCCTATACTTGCGATGTTACGA
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