Homology
BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Match:
D8LFF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF8_ECTSI)
HSP 1 Score: 131 bits (330), Expect = 1.210e-38
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 1
Query: 1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDIRIRNPPQAAVDRLLGNAMTRSALERANADMAAAASK 219
MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRD+RIRNPPQAAVDR+L N TRSALERANADMAAAASK
Sbjct: 1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 73
BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Match:
A0A6H5K0K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K0_9PHAE)
HSP 1 Score: 54.7 bits (130), Expect = 3.180e-8
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -2
Query: 90 MSAFALSNADLVIALPSNRSTAACGGLRMRMSRFNSM 200
MSAFALSNADLV S STAACGG+RMRMSRFNS+
Sbjct: 1 MSAFALSNADLVAGFASILSTAACGGVRMRMSRFNSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.21e-38 / Id = 93.15 Expect = 3.18e-8 / Id = 78.38 Sequence D8LFF8_ECTSI A0A6H5K0K0_9PHAE
Match Name E-value Identity Description
D8LFF8_ECTSI 1.210e-38 93.15 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0K0_9PHAE 3.180e-8 78.38 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-07_006160.1
Exons 2
Model size 231
Cds size 231
Stop 1
Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816589.0814867-CDS-L-elsbetiae_contig5571:6196..6335 1622816589.0814867-CDS-L-elsbetiae_contig5571:6196..6335 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5571 6197..6335 -
1691683667.8979151-CDS-L-elsbetiae_contig5571:6196..6335 1691683667.8979151-CDS-L-elsbetiae_contig5571:6196..6335 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5571 6197..6335 -
1622816589.093177-CDS-L-elsbetiae_contig5571:6910..7002 1622816589.093177-CDS-L-elsbetiae_contig5571:6910..7002 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5571 6911..7002 -
1691683667.909586-CDS-L-elsbetiae_contig5571:6910..7002 1691683667.909586-CDS-L-elsbetiae_contig5571:6910..7002 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5571 6911..7002 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5571.13883.1
>prot_L-elsbetiae_contig5571.13883.1 ID=prot_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDIRIRNPPQAAVDRL LGNAMTRSALERANADMAAAASKVRV* back to top mRNA from alignment at L-elsbetiae_contig5571:6197..7002-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5571.13883.1 ID=mRNA_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=806bp|location=Sequence derived from alignment at L-elsbetiae_contig5571:6197..7002- (Laminarionema elsbetiae ELsaHSoW15)ATGGGTGGCGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGG
CCGCACGGACAGGCTCATCGGCCTCGACGACTTCGATTACAT GTGAGAGG
GCTGCCACATGCGATCGGGATGGATTCACACGCAGTACGGAGTAGTGGGC
ATATCCCTTGCTTTCTGACCTGCATAAACTCCCTGTTGATGTGCCGCCGC
CGCCGCCGCCGCCGCCGCCGCTGCTGCTGTAGACACGCGCTTTGGTTGTA
CGGCGAATTACTCTGACGGCGAAGACTGCTGTCTGCCTGTGCGCGCGCAC
CCTGTCGGATGCGATTTGTTTGCTAAGGAGCCGGTTACACGTGTACATGG
GTTCGAAACTGTGTTGTTGGTGGTCTGTCGGCTAGTTTATCCGTAGTACG
CTTTATTCGCTCACGCGCAACAAGCCACCTCGCGTCGCCCGTATATATAT
ATTTTTTTTTTTTACCTGTATTGTACATACGCTCCTAATCAATAAATAAC
CCTCTTCGGGCCGTTTATGCACCGCCGATGTCGTGTATGATACGGACTAC
GCGCCCTTGTGTTGTTCGTCTCGCTTCCGTGCGGCTTTTCTTTGTTTTCT
TTTATTTCATTTTCTTTCTTTTTTTTCGTTTTGTTGGCTGGCTGCTGCTG
CTGCTGCTGCTGTGTAGGCTGTTGAACCGCGACATACGCATCCGCAACCC
GCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAACGCGATGACGAGGTCTG
CGTTGGAGAGGGCAAACGCTGACATGGCGGCCGCAGCAAGCAAGGTACGA
GTCTGA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5571:6197..7002-
>mRNA_L-elsbetiae_contig5571.13883.1 ID=mRNA_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig5571:6197..7002- (Laminarionema elsbetiae ELsaHSoW15) ATGGGTGGCGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGG CCGCACGGACAGGCTCATCGGCCTCGACGACTTCGATTACATATGGGTGG CGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGGCCGCACGG ACAGGCTCATCGGCCTCGACGACTTCGATTACATGCTGTTGAACCGCGAC ATACGCATCCGCAACCCGCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAA CGCGATGACGAGGTCTGCGTTGGAGAGGGCAAACGCTGACATGGCGGCCG CAGCAAGCAAGGTACGAGTCTGAGCTGTTGAACCGCGACATACGCATCCG CAACCCGCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAACGCGATGACGA GGTCTGCGTTGGAGAGGGCAAACGCTGACATGGCGGCCGCAGCAAGCAAG GTACGAGTCTGA back to top