mRNA_L-elsbetiae_contig5571.13883.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5571.13883.1
Unique NamemRNA_L-elsbetiae_contig5571.13883.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Match: D8LFF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF8_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.210e-38
Identity = 68/73 (93.15%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDIRIRNPPQAAVDRLLGNAMTRSALERANADMAAAASK 219
            MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRD+RIRNPPQAAVDR+L N  TRSALERANADMAAAASK
Sbjct:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 73
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BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Match: A0A6H5K0K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K0_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 3.180e-8
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -2 
Query:   90 MSAFALSNADLVIALPSNRSTAACGGLRMRMSRFNSM 200
            MSAFALSNADLV    S  STAACGG+RMRMSRFNS+
Sbjct:    1 MSAFALSNADLVAGFASILSTAACGGVRMRMSRFNSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5571.13883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFF8_ECTSI1.210e-3893.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0K0_9PHAE3.180e-878.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5571contigL-elsbetiae_contig5571:6197..7002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006160.1
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816589.0814867-CDS-L-elsbetiae_contig5571:6196..63351622816589.0814867-CDS-L-elsbetiae_contig5571:6196..6335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5571 6197..6335 -
1691683667.8979151-CDS-L-elsbetiae_contig5571:6196..63351691683667.8979151-CDS-L-elsbetiae_contig5571:6196..6335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5571 6197..6335 -
1622816589.093177-CDS-L-elsbetiae_contig5571:6910..70021622816589.093177-CDS-L-elsbetiae_contig5571:6910..7002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5571 6911..7002 -
1691683667.909586-CDS-L-elsbetiae_contig5571:6910..70021691683667.909586-CDS-L-elsbetiae_contig5571:6910..7002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5571 6911..7002 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5571.13883.1prot_L-elsbetiae_contig5571.13883.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5571 6197..7002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5571.13883.1

>prot_L-elsbetiae_contig5571.13883.1 ID=prot_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDIRIRNPPQAAVDRL
LGNAMTRSALERANADMAAAASKVRV*
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mRNA from alignment at L-elsbetiae_contig5571:6197..7002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5571.13883.1 ID=mRNA_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=806bp|location=Sequence derived from alignment at L-elsbetiae_contig5571:6197..7002- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGGCGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGG
CCGCACGGACAGGCTCATCGGCCTCGACGACTTCGATTACATGTGAGAGG
GCTGCCACATGCGATCGGGATGGATTCACACGCAGTACGGAGTAGTGGGC
ATATCCCTTGCTTTCTGACCTGCATAAACTCCCTGTTGATGTGCCGCCGC
CGCCGCCGCCGCCGCCGCCGCTGCTGCTGTAGACACGCGCTTTGGTTGTA
CGGCGAATTACTCTGACGGCGAAGACTGCTGTCTGCCTGTGCGCGCGCAC
CCTGTCGGATGCGATTTGTTTGCTAAGGAGCCGGTTACACGTGTACATGG
GTTCGAAACTGTGTTGTTGGTGGTCTGTCGGCTAGTTTATCCGTAGTACG
CTTTATTCGCTCACGCGCAACAAGCCACCTCGCGTCGCCCGTATATATAT
ATTTTTTTTTTTTACCTGTATTGTACATACGCTCCTAATCAATAAATAAC
CCTCTTCGGGCCGTTTATGCACCGCCGATGTCGTGTATGATACGGACTAC
GCGCCCTTGTGTTGTTCGTCTCGCTTCCGTGCGGCTTTTCTTTGTTTTCT
TTTATTTCATTTTCTTTCTTTTTTTTCGTTTTGTTGGCTGGCTGCTGCTG
CTGCTGCTGCTGTGTAGGCTGTTGAACCGCGACATACGCATCCGCAACCC
GCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAACGCGATGACGAGGTCTG
CGTTGGAGAGGGCAAACGCTGACATGGCGGCCGCAGCAAGCAAGGTACGA
GTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5571:6197..7002-

>mRNA_L-elsbetiae_contig5571.13883.1 ID=mRNA_L-elsbetiae_contig5571.13883.1|Name=mRNA_L-elsbetiae_contig5571.13883.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig5571:6197..7002- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTGGCGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGG
CCGCACGGACAGGCTCATCGGCCTCGACGACTTCGATTACATATGGGTGG
CGTGTCCGGGCTGATGTCGCTGACGAACTATCTCACGGTCGGCCGCACGG
ACAGGCTCATCGGCCTCGACGACTTCGATTACATGCTGTTGAACCGCGAC
ATACGCATCCGCAACCCGCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAA
CGCGATGACGAGGTCTGCGTTGGAGAGGGCAAACGCTGACATGGCGGCCG
CAGCAAGCAAGGTACGAGTCTGAGCTGTTGAACCGCGACATACGCATCCG
CAACCCGCCGCAAGCCGCGGTGGACCGGTTGCTCGGCAACGCGATGACGA
GGTCTGCGTTGGAGAGGGCAAACGCTGACATGGCGGCCGCAGCAAGCAAG
GTACGAGTCTGA
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