mRNA_L-elsbetiae_contig557.13882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: D8LSW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW7_ECTSI) HSP 1 Score: 271 bits (692), Expect = 5.960e-87 Identity = 142/202 (70.30%), Postives = 174/202 (86.14%), Query Frame = 1 Query: 22 MKAKAVVLVLVTAFLCFFLPSCMGKRTAKDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERLERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKDLAGPTMLFAQV---GSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTWNSQDFFPPKDEDE 618 MKAKAV+L L T L LP+CMGKR+AKDWSKMDL++LEKQWEDGDE+EELKTE Q+KFE LERRRK+AQA+AG DPS++G M+AAQ+ AM+AGQKD GPTMLFAQV G G++ +GD ISK++TE++GGR QQ+AQLGSLEVSVY L+AGS+LVSSQ+GWEG+++LDFLLSRPEVSKVTWNS+DF+PPK+ +E Sbjct: 1 MKAKAVLLSLGTMLLFSGLPACMGKRSAKDWSKMDLNELEKQWEDGDEDEELKTEEQAKFENLERRRKQAQANAGKFDPSSLGSMTAAQVGAMAAGQKDATGPTMLFAQVRSGGLGETGGSGDNGGSISKEETEKVGGRLQQLAQLGSLEVSVYALDAGSVLVSSQRGWEGQQILDFLLSRPEVSKVTWNSRDFYPPKEGEE 202
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: A0A7S2RHB1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHB1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.340e-17 Identity = 63/190 (33.16%), Postives = 110/190 (57.89%), Query Frame = 1 Query: 31 KAVVLVLVTAFLCFFLPSCMGKRTAKDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERLERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKDLAGPTMLFAQVGSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTWNSQDFFP 600 +AVVL L+ L + R++KDW K+D D LE++W+ GDEE+EL T+ + F ++RRR++ ID I + ++ Q+ +AGPTM+F ++ + E G ++++ + G ++ + G L V+ + +E +L S QKGW+G +V +FLL++ +V+KVTW++QD+ P Sbjct: 5 EAVVLALLA------LLALAWGRSSKDWGKVDFDALEEEWKYGDEEDELITDDELLFREMQRRREQG------ID---IKNLDVERVKH----QQSMAGPTMMFIEL---RPREGG-----YAEEELYNITGIWKDLMYTGGLTVTFFNIENDKVLCSMQKGWDGIQVKEFLLTQSQVAKVTWDNQDYVP 167
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: A0A2R5GJ56_9STRA (Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ56_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 4.460e-8 Identity = 62/196 (31.63%), Postives = 90/196 (45.92%), Query Frame = 1 Query: 10 GGSTMKAKAVVLVLVTAFLCFFLPSCM------GKRTAKDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERLERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKDLAGPTMLFAQVGSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTW 579 GGS A + +C +L + GKR +D + D D LE+Q E DE EL+TE Q+ + +ER KE+Q S GA TM+F Q+ GK +E Q+T G R +++A+ G ++VSVY LE G ++V+ QKGW + D + +PEV V W Sbjct: 13 GGSRAFASRAAACALACCVCLYLLAASATALAPGKRW-QDLTDQDWDRLERQLEVDDEAAELETEGQALYAEIER--KESQGSLGA---------------------------TMMFVQL-RGKLDE----------QETIGFGDRLKRLAKTGGVDVSVYKLEPGKLVVTLQKGWVATGIYDLISDQPEVDNVHW 167
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: A0A7S2L517_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L517_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.170e-6 Identity = 49/166 (29.52%), Postives = 82/166 (49.40%), Query Frame = 1 Query: 100 TAKDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERL-----ERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKDLAGPTMLFAQVGSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTWN 582 T DWS DL++LE+QWE+GD+ +L +F +L E R++ + D G+ S + M + P M+F ++ S +E +G + Q +++ + ++ Y +E+ ++V+ KGW GKEV FLL+R EV +VTWN Sbjct: 23 TRIDWSNQDLEELERQWEEGDDPGDLIAP-DDEFHKLVEKVQESSRRKLEYFRKGYD---TGKYSRQTLEKMETEYSNAGKPAMIFVKLRSEFTEVDG-------------VSTFCQSWSEMIAHDIKCYPIESNDLMVTVAKGWVGKEVHKFLLTRTEVLEVTWN 171
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: K3X437_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X437_GLOUD) HSP 1 Score: 59.3 bits (142), Expect = 1.340e-6 Identity = 49/191 (25.65%), Postives = 84/191 (43.98%), Query Frame = 1 Query: 46 VLVTAFLCFFLPSCMGKRTAKDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERLERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKDLAGPTMLFAQVGSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTWNSQDFFPPKDEDE 618 VL+ A LC+ + + K ++D D LEK WE GD E+EL++ +G +A S GP M+F + + + +G + ++ +L R++++ G L+V++Y +E +LV QKG + ++ FLL +PEV + WN Q F +E Sbjct: 11 VLLAACLCWLVALATVQAARK--PQIDYDALEKAWEAGDTEQELRS---------------------------VGDEQVQSLAEKSEADAKALGPQMVFVTL---RDDSHGAAQKDLT-----DLASRWKELLWNGGLDVNIYEIEHAKLLVGLQKGIQVDDLHRFLLEQPEVHEFEWNGQTFSASSSRNE 164
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Match: A0A482SP59_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP59_9ARCH) HSP 1 Score: 58.2 bits (139), Expect = 2.330e-6 Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 1 Query: 106 KDWSKMDLDDLEKQWEDGDEEEELKTERQSKFERLERRRKEAQASAGAIDPSTIGRMSAAQIAAMSAGQKD----LAGPTMLFAQVGSGKSEENGDKDRPISKQQTEELGGRFQQMAQLGSLEVSVYTLEAGSILVSSQKGWEGKEVLDFLLSRPEVSKVTWNSQDFFP 600 K+W+K+D +DL+KQWE GD++EEL+ + FE + + +++ + D I +A Q+D G M+F + K ++ K+ K+ TE L R+ + + G + +VY ++ +L++ K W+ K++L FL + EV T NS+ + P Sbjct: 22 KNWNKIDYNDLDKQWESGDDQEELEHD----FEHIRKIQEKKRPKLNMEDGHAI----------RNAYQQDPFLFSGGGMMVFVDL---KPKQPDGKE--WDKRSTELLSKRYSTLLRSGGVVGTVYNIDEKRLLINVDKSWQTKDMLTFLAKQAEVESFTANSKTYSP 171 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig557.13882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig557.13882.1 >prot_L-elsbetiae_contig557.13882.1 ID=prot_L-elsbetiae_contig557.13882.1|Name=mRNA_L-elsbetiae_contig557.13882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=201bp MKAKAVVLVLVTAFLCFFLPSCMGKRTAKDWSKMDLDDLEKQWEDGDEEEback to top mRNA from alignment at L-elsbetiae_contig557:30280..36068- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig557.13882.1 ID=mRNA_L-elsbetiae_contig557.13882.1|Name=mRNA_L-elsbetiae_contig557.13882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5789bp|location=Sequence derived from alignment at L-elsbetiae_contig557:30280..36068- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig557:30280..36068- >mRNA_L-elsbetiae_contig557.13882.1 ID=mRNA_L-elsbetiae_contig557.13882.1|Name=mRNA_L-elsbetiae_contig557.13882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1206bp|location=Sequence derived from alignment at L-elsbetiae_contig557:30280..36068- (Laminarionema elsbetiae ELsaHSoW15)back to top |