mRNA_L-elsbetiae_contig5568.13878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5568.13878.1
Unique NamemRNA_L-elsbetiae_contig5568.13878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: D8LJ69_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ69_ECTSI)

HSP 1 Score: 394 bits (1012), Expect = 7.740e-128
Identity = 233/338 (68.93%), Postives = 258/338 (76.33%), Query Frame = 1
Query:    1 LSSFYTAINWAGTAVFRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRANIAVPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPHVIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREKKRRERRDAISSGSAKKAAQPPRGKGPAAPLLPVTAASTTAVKIPSSARGSSVMVNGKRTVG----GDERKGGKV 1002
            LSSFYTAINWAGTAVFRRERK +K  FDRRQWTLV+LLSV TALNTL+GRANIAVPTTFDQ   MLQAVGPLLVLLLATRVFKRSVS ERK+AVIPI+VGVAM WYSEME+SRSA +VS VCIVLNAIKVVINSEMLTGEYK                 +STFA+ HGEV+G++G W EI  GWAPHVIALTG  SF+LTV+S+HATKFATPLTVSV+GALKQILV  F+V +M RSVSRLNV+GLV  LVGAVRYTIVSR E++ RE+R A S+GSA          G  A +LP T  S      PS AR   VMVNGKR       GD R+GG V
Sbjct:   17 LSSFYTAINWAGTAVFRRERKTSKQAFDRRQWTLVSLLSVSTALNTLVGRANIAVPTTFDQ---MLQAVGPLLVLLLATRVFKRSVSMERKVAVIPIMVGVAMTWYSEMEVSRSAFTVSAVCIVLNAIKVVINSEMLTGEYK-----------------MSTFALVHGEVSGVVGRWREISMGWAPHVIALTGIASFVLTVMSLHATKFATPLTVSVLGALKQILVVAFSVLRMNRSVSRLNVLGLVLVLVGAVRYTIVSRSERRSREKRGATSAGSA----------GNKASVLPTTVPSIG----PSDAR---VMVNGKRAEAKRGDGDIRRGGGV 317          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: D7FYJ9_ECTSI (TPT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYJ9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.620e-45
Identity = 107/307 (34.85%), Postives = 181/307 (58.96%), Query Frame = 1
Query:    1 LSSFYTAINWAGTAVFRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAAS---------VSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPHVIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREKKRRERRDAISSGSAKKAAQPPR-GKGPAAPLLP 888
            +S+F+   NW GT V+       + T  R+QW  + + SV  ALN  +G  + + VP TF+Q   +++++ P++V+++ T+VF ++ SR RK+AV+PIV GV MA Y +     +  +         V++ C++L+ +K V++ EMLTG+ K+ PL LLSR++P+ L Q++  A+  GEV+ ++ +W EI  GWA + +A+TG  SF L + S+ A K  +PLT+S+M  +KQ+L+   +    + + S LN  G V  ++ + RY+++S  E+ +        S   K   +PP  G G + PLLP
Sbjct:   62 MSAFHMFCNWLGTVVYFARSGEEQQTIKRQQWPTLIMFSVVFALNISVGNTSSSMVPVTFNQ---VMRSLVPVIVMVIGTQVFGKTFSRARKLAVLPIVAGVIMACYPDSASDSNPEARPFRAVGVIVTVFCVMLSGLKNVVSGEMLTGDIKMPPLQLLSRMAPLALVQMAVGALALGEVSSLVANWREIREGWALYGVAITGVGSFSLNLCSLQANKVTSPLTLSIMANIKQVLIVAASSVVFKDTASTLNKFGFVVVILASTRYSMLSVSERNK--------SREVKALIEPPEIGIGKSLPLLP 357          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A482SCD9_9ARCH (TPT domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCD9_9ARCH)

HSP 1 Score: 150 bits (379), Expect = 1.070e-36
Identity = 94/266 (35.34%), Postives = 151/266 (56.77%), Query Frame = 1
Query:    1 LSSFYTAINWAGTAV-FRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPHVIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREK 792
            LS+ + A N  G  V F   R     T +      +   SV  +LN  IG A++  V   F+Q   + +A+ P++VL++    FKR+ S+ERK AV+PIVVGVA A+Y +M  +      +  C+VL A+K VI  E+LTG+ K++ + LL ++ P+ L Q+ T ++ +GEV  ++ +W  +    AP V+ LTG +SF L V S  A K  +PLT+ +   +KQ+L+  F        VS +N +G++  ++G+ RY +V+  EK
Sbjct:   43 LSAIHMACNIIGAQVYFLWNRNVKPKTIEGPNRRSILFFSVIFSLNIAIGNASLQYVSVNFNQ---VCRALVPVIVLVVTMVYFKRAYSQERKWAVVPIVVGVATAFYGDMRYTTIGIVYTGFCVVLAALKAVIGGELLTGDLKLSEMDLLYKMCPLALLQLGTISILNGEVAAIMSNWDTLSVSSAPQVVLLTGVLSFSLNVSSFIANKVTSPLTLCIAANIKQVLLVAFGTIYFGDHVSLINGLGIMIVIIGSYRYGVVTISEK 305          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S2SVZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVZ2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.620e-29
Identity = 87/265 (32.83%), Postives = 147/265 (55.47%), Query Frame = 1
Query:    1 LSSFYTAINWAGT----AVFRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPHVIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVS 780
            LS+ + A N  GT     VF  ERK  K+     Q  ++A  S+  A N  IG A++  V   F+Q   +++++ P +V+++ ++ F +S S +RK  ++P+++GV +A + EM  S     V+  C++L A KVV+++ MLTGE+K+ PL LLSR+ P+   ++ T A  +GE+  +   W E+    A  V+ ++G  SF L + S +A K  + LT+SV    KQ+L+           ++ +N VG +  L G+  Y+ VS
Sbjct:  111 LSAVHMACNTIGTLVYFGVFSEERKKRKNLGIDGQRRILAF-SLIFAANIAIGNASLKYVSVNFNQ---VMRSLVPGVVMVIGSQFFGKSHSADRKRTLVPVIIGVMLACFGEMHFSYLGFFVTCFCVLLAAAKVVLSNVMLTGEFKLGPLDLLSRMCPLAFVEIITVAFLNGELAALAADWPELSQSKAIPVVLISGIASFTLNITSFYANKMTSALTLSVAANAKQVLMIVIATIVFGTPMNAVNGVGTMIVLAGSAWYSQVS 371          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S2EE68_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EE68_TRICV)

HSP 1 Score: 126 bits (316), Expect = 1.350e-27
Identity = 82/246 (33.33%), Postives = 142/246 (57.72%), Query Frame = 1
Query:   82 DRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHW-SEILTGWAPH---VIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREKKRRE 804
            DR    ++   SV  +LN  +G  ++  V   F+Q   +++++ P + +++   + K+ +SR+R +AVIPIV+GVAMA + +M  S     +++ C++L A+KVV + EMLTG  K+ P+ LL  ++P+ + Q    +   GE+  +   W +E+     P    V+ L+G  SF L + S+ A K  +PLT+ +   +KQ+L+  F+    Q  ++ LN  G+V  LVG+ RY+ VS  EKKR++
Sbjct:   94 DRGGQKMILAFSVIFSLNIAVGNVSLKYVSVNFNQ---VMRSLVPAITIVMGLTL-KKPISRQRIVAVIPIVIGVAMACFGDMSYSWLGFFITVGCVLLAALKVVASGEMLTGNIKLHPVDLLGHMAPLAMIQCLILSFLTGEIWSISRRWDAELNPSINPQPLSVVLLSGVFSFSLNICSLMANKLTSPLTLCIAANVKQVLMIAFSTIIFQTEITPLNGFGIVVVLVGSARYSYVSVLEKKRQD 335          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S3VAQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAQ9_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.430e-27
Identity = 79/249 (31.73%), Postives = 148/249 (59.44%), Query Frame = 1
Query:   76 TFDRRQWT-----LVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWS-EILTGWAPH---VIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREK 792
            T  R+Q T     LV L SV  +LN  IG A++  V   F+Q   +++++ P + +++   + K ++SR+R++AV+P+++GVAMA + +M  +     V+++C++L A+KVV + EMLTG  K+ P+ LLS+++P+ + Q    ++  GE+T ++  W+ ++     P+   +I L+G  +F L + S+ A K  +PLT+ +   +KQ+++   +    Q  +S +N  G+   L G+ +Y+ VS  EK
Sbjct:  104 TITRKQVTGRNKVLVLLYSVIFSLNIAIGNASLRYVSVNFNQ---VMRSLVPAITIVMGLCLGK-NISRKRQLAVVPVIIGVAMATFGDMSFTTFGLFVTVLCVLLAALKVVASGEMLTGSLKMHPVDLLSKMAPLAMGQCFVLSIVSGELTAIVKRWNVDLNPAIDPYPLTIILLSGVAAFSLNISSLMANKLTSPLTLCIAANVKQVMMIAISTLIFQTDISFMNGFGIFVVLCGSAQYSFVSMAEK 348          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S2VF30_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VF30_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.590e-26
Identity = 85/284 (29.93%), Postives = 150/284 (52.82%), Query Frame = 1
Query:   70 KHTFDRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWA---PHVIAL-TGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREKKRRERRDAISSG------SAKKAAQPPRGKGPAAPLLP 888
            + T D+    L+   S   +LN  IG  ++  V   F+Q   +++++ P + + +   + K + S  R++AV+P+++GVAMA + +M  +      +++CI+L A+KVV + EMLTG  K+ P+ LL  ++P+ L Q   FA F GE+T +   W + L  +    P ++ + +G  SF L + S+ A K  +PLT+ +   +KQ+L+   +       +S LN  G++  L+G+ RY+ VS  EK   ++   +           +K A  P G G  A L+P
Sbjct:   34 RQTLDKSGKRLILAFSFIFSLNIAIGNVSLKYVSVNFNQ---VMRSLVPAITIAMGMALGKPT-SLRRQLAVLPVIMGVAMACFGDMSYTALGFFYTVMCILLAALKVVASGEMLTGSLKLHPVDLLGHMAPLALVQCIVFAFFTGEITSIASRWEKELNPFVNIYPFLVVVGSGVASFTLNISSLQANKLTSPLTLCIAANVKQVLMIAMSTVLFNIDISPLNGAGILVVLMGSARYSYVSVMEKSAPKQSSDVKMSPKTTEPDEEKGALLPSGSGKEAELVP 313          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S2YCI9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCI9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.340e-25
Identity = 79/259 (30.50%), Postives = 139/259 (53.67%), Query Frame = 1
Query:   31 AGTAVFRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPH----VIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREK 792
            A + + +      + T D++   L+   SV  +LN  IG  ++  V   F+Q   +++++ P + + +   +  R  S +R++AV+P++VGVAMA + +M  +      +++CI L A+KVV + EMLTG  K+ P  LL  ++P+   Q  T +   GEVT ++  W+  L+ W       V+ L+G +SF   + S+ A K  +PLT+ + G +KQ+L+ G         ++ LN  G++  L G+  Y+ VS  EK
Sbjct:  123 AESCITKMLGNVQRQTLDKKGKNLILAFSVIFSLNIAIGNVSLQYVSVNFNQ---VMRSLVPAITIAMGFAL-GRPTSFQRQLAVLPVIVGVAMACFGDMSYTWLGFFYTVMCIFLAALKVVSSGEMLTGHLKLHPFDLLGHMAPLAFVQCLTMSFATGEVTSIIARWNTELSPWVDIYPMLVVMLSGVLSFTFNISSLQANKLTSPLTLCIAGNVKQVLMIGIATVIFSVEITPLNGAGIMVVLAGSGWYSYVSIMEK 377          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A6U0HVW1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0HVW1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.090e-25
Identity = 74/242 (30.58%), Postives = 137/242 (56.61%), Query Frame = 1
Query:   82 DRRQWTLVALLSVCTALNTLIGRANIA-VPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWA-PH---VIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREK 792
            DR    L+   SV  +LN  IG  ++  V   F+Q   +++++ P + +++   + ++++S+ R+IAV+P+V+GVAMA + +M  +      +++C++L A+KVV + EMLTG  K+ P+ LL  ++P+ + Q    +   GEV+ +   W   L  +  P+   ++  +G  SF L + S+ A K  +PLT+ +   +KQ+L+  F+       ++ LN +G+V  L G+  Y+ VS  EK
Sbjct:   13 DRSGKKLILSFSVIFSLNIAIGNVSLRHVSVNFNQ---VMRSLVPAVTIIMGL-MLRKNISKNRQIAVVPVVIGVAMACFGDMSYTPLGFFYTVLCVLLAALKVVASGEMLTGNLKLHPVDLLGHMAPLAMVQCLVLSFVTGEVSSIASRWEAELNPFVHPYPLFIVVTSGVFSFSLNICSLMANKLTSPLTLCIAANVKQVLLIAFSTIVFGTEITFLNGMGIVVVLAGSSWYSYVSMAEK 250          
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Match: A0A7S2YK27_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YK27_9STRA)

HSP 1 Score: 120 bits (300), Expect = 3.260e-25
Identity = 88/282 (31.21%), Postives = 143/282 (50.71%), Query Frame = 1
Query:   25 NWAGTAVFRRERKANKHTFDRRQWTLVALLSVCTALNTLIGRAN-IAVPTTFDQA*QMLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRSAASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFAVFHGEVTGMLGHWSEILTGWAPH------VIALTGFVSFILTVLSMHATKFATPLTVSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREKKRRE----RRDAISSGSAK 837
            +W  T     E+K      D +   L+   SV  + N  IG  + I V   F+Q   +++++ P + + +   + K + S +R+IAVIP++VGVAMA + +M  S      + +C+ L A+KVV + E+LTG+ K+ P  LL  ++P+ L Q    ++  GEV  +L  W    + W P       ++ LTG +S    V S+   K  +PLT+ V   +KQ+L+ G      +  +S LN  G+   L G+  Y+ VS  EK   +    R+ AI S SA+
Sbjct:   36 SWITTLFGDLEKKE----LDAKGKRLILAYSVLFSANLCIGNVSLIYVSVNFNQ---VMRSLVPAVTIFMGYFINKPT-SFQRQIAVIPVIVGVAMACFGDMSFSTIGFGYTSLCVFLAALKVVASGEILTGDLKLHPFDLLRHMTPLALVQCLIMSIATGEVQEILQRWPTDFSPWGPKGLYPSSIVNLTGLISLTFNVSSLQVNKLTSPLTLCVAANVKQVLMIGIATAVFETEISPLNAAGIAIVLAGSAWYSYVSSMEKAAAKALGNRQTAIRSSSAR 309          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5568.13878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ69_ECTSI7.740e-12868.93TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYJ9_ECTSI1.620e-4534.85TPT domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A482SCD9_9ARCH1.070e-3635.34TPT domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S2SVZ2_9STRA2.620e-2932.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2EE68_TRICV1.350e-2733.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3VAQ9_9STRA5.430e-2731.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2VF30_9STRA4.590e-2629.93Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2YCI9_9STRA1.340e-2530.50Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A6U0HVW1_9STRA2.090e-2530.58Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2YK27_9STRA3.260e-2531.21Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5568contigL-elsbetiae_contig5568:1435..6724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue2e-30
Seed eggNOG ortholog2880.D7FYJ9
KEGG koko:K15285
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_004970.1
Exons6
Model size2385
Cds size888
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5568.13878.1prot_L-elsbetiae_contig5568.13878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5568 2311..5419 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816588.1329634-UTR-L-elsbetiae_contig5568:1434..16211622816588.1329634-UTR-L-elsbetiae_contig5568:1434..1621Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 1435..1621 +
1691683667.1015759-UTR-L-elsbetiae_contig5568:1434..16211691683667.1015759-UTR-L-elsbetiae_contig5568:1434..1621Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 1435..1621 +
1622816588.1443624-UTR-L-elsbetiae_contig5568:2305..23101622816588.1443624-UTR-L-elsbetiae_contig5568:2305..2310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 2306..2310 +
1691683667.1175065-UTR-L-elsbetiae_contig5568:2305..23101691683667.1175065-UTR-L-elsbetiae_contig5568:2305..2310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 2306..2310 +
1622816588.2238917-UTR-L-elsbetiae_contig5568:5419..67241622816588.2238917-UTR-L-elsbetiae_contig5568:5419..6724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 5420..6724 +
1691683667.1885006-UTR-L-elsbetiae_contig5568:5419..67241691683667.1885006-UTR-L-elsbetiae_contig5568:5419..6724Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5568 5420..6724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816588.155179-CDS-L-elsbetiae_contig5568:2310..23911622816588.155179-CDS-L-elsbetiae_contig5568:2310..2391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 2311..2391 +
1691683667.1304388-CDS-L-elsbetiae_contig5568:2310..23911691683667.1304388-CDS-L-elsbetiae_contig5568:2310..2391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 2311..2391 +
1622816588.1652663-CDS-L-elsbetiae_contig5568:3037..31901622816588.1652663-CDS-L-elsbetiae_contig5568:3037..3190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 3038..3190 +
1691683667.1395552-CDS-L-elsbetiae_contig5568:3037..31901691683667.1395552-CDS-L-elsbetiae_contig5568:3037..3190Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 3038..3190 +
1622816588.180953-CDS-L-elsbetiae_contig5568:3807..38581622816588.180953-CDS-L-elsbetiae_contig5568:3807..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 3808..3858 +
1691683667.1532574-CDS-L-elsbetiae_contig5568:3807..38581691683667.1532574-CDS-L-elsbetiae_contig5568:3807..3858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 3808..3858 +
1622816588.192914-CDS-L-elsbetiae_contig5568:4316..45081622816588.192914-CDS-L-elsbetiae_contig5568:4316..4508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 4317..4508 +
1691683667.1677775-CDS-L-elsbetiae_contig5568:4316..45081691683667.1677775-CDS-L-elsbetiae_contig5568:4316..4508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 4317..4508 +
1622816588.2097461-CDS-L-elsbetiae_contig5568:5008..54191622816588.2097461-CDS-L-elsbetiae_contig5568:5008..5419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 5009..5419 +
1691683667.1790829-CDS-L-elsbetiae_contig5568:5008..54191691683667.1790829-CDS-L-elsbetiae_contig5568:5008..5419Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5568 5009..5419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5568.13878.1

>prot_L-elsbetiae_contig5568.13878.1 ID=prot_L-elsbetiae_contig5568.13878.1|Name=mRNA_L-elsbetiae_contig5568.13878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=296bp
MLQAVGPLLVLLLATRVFKRSVSRERKIAVIPIVVGVAMAWYSEMEISRS
AASVSLVCIVLNAIKVVINSEMLTGEYKVTPLHLLSRVSPMTLAQVSTFA
VFHGEVTGMLGHWSEILTGWAPHVIALTGFVSFILTVLSMHATKFATPLT
VSVMGALKQILVAGFTVFKMQRSVSRLNVVGLVFALVGAVRYTIVSRREK
KRRERRDAISSGSAKKAAQPPRGKGPAAPLLPVTAASTTAVKIPSSARGS
SVMVNGKRTVGGDERKGGKVDGEKVKTKPWSWWSRNKSDASRRNR*
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mRNA from alignment at L-elsbetiae_contig5568:1435..6724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5568.13878.1 ID=mRNA_L-elsbetiae_contig5568.13878.1|Name=mRNA_L-elsbetiae_contig5568.13878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5290bp|location=Sequence derived from alignment at L-elsbetiae_contig5568:1435..6724+ (Laminarionema elsbetiae ELsaHSoW15)
CTGAGCTCGTTCTACACGGCGATAAACTGGGCCGGGACGGCCGTGTTCCG CCGCGAGAGAAAGGCCAACAAGCACACGTTCGACCGCCGACAGTGGACGC TGGTTGCCCTGCTGTCGGTGTGCACCGCGCTCAACACGCTGATAGGGAGG GCTAACATTGCGGTGCCAACGACGTTCGACCAGGCATGTTTAGTCTTTTT TTTTGTGCTGTTGGTGTGTGTGGTGGTGGTGCTGCTGCTGCTGCCGCTGC TGCTGTACTGCGGTCGTTTGGCGGCAATGTATCCCCCCCCATATATGGGT CATTGTGTTAGACTCTAACGTGCGAGGGGTGGCTCTGACCTTTTGCCCGG GGTACACAGGCAGGCTTTTCTGGATCCTGTCTGAGCGGTGGGTTGCCCGT CTGTGCTACATATGCACATATCTGAGCAACGAAAGGGAGAACTGGTGCTT AACCTGACGGCGACAGGCCTCAAGGGCGTACCTGGAATGCAGCAAGGGTA TCATACTCGAGTTGCCTCCCTTCCCTTACCCGACCGTTCGTCGGAGCATC ATCTTTGGTCCGTGTCTTCACGGTCCACGGTCCTATGTACATGCGTATGT ATACGCTGTGTATTTACGTTTTTTTTTTTTTTGTCTGCCCATTATTGGAT TTGTCGTCTGCCCCTCTGGCCCCAATCCTCCACTTCTACTCTAGCTAGAC GACCCAACCGGGGTCACACAGGAGGGGGGGGTTGGACCCCCTCTCGTTGC TGTCGCCACCAAAAAGCCTCCTTGTGGTTTTCACTCTCCTTTTTTTGTCT CGTTCGCGGCGGCTGCGCTGTCCACATCAAAACGCCTCTTACGTACATAC CTCTCGTGCTTTTCCCGCAAGAACAGATGCTGCAAGCAGTGGGCCCCCTA CTGGTCTTGCTGCTAGCAACGAGGGTCTTCAAACGCTCAGTCTCTCGGGA GAGAAAGGTGTGGCCAACCGTTGTGCGTAGGAGTGTTTTTTCAAGTGTTC GAAGTATCTGCCACCTAAATACGTAATAGAATATTTTTTTTTGGGGGGGG AGAGAGAGAGGGGGGGGGGTTGAGATCCGCCCGCGTGTTTTGCAAGCGGT GGGGCTTCCTCGTCATTAGTGTTCCTGCTGCAAACATCGCAGGAGGCTGG ATGTCAAAATCATATCTCTTGAACCGGTAAGTTTTTACGGTTACATAGAG AACGAGATGCGCGCTCCGTTGAAGCCAACACTCGATGGTGACCGTAGACG ACAATGAGGGCCAGTCGATGATCTTGCGGCGAAACCCCGAGCAAGAATGA AATGACGATGGATGCTAAGCGTTCTCTGTTGCAGGATCGAAAAGTACGTA CAACAGTTGTACAATGATACACCCCCTCCGCCATTCCCACAAGTCAAAAG GAAGAGCAGTGCAATCAGACTAGGTAAGGGGTTGCCATAAATATGCCATA AATAATGGCCTAATCGCAAGAGAGACGAGGCCTACCAAAGACTGCTGTAG TTTCCGTTGAAGCTTACACCCGCCCTCCTGCAACTCCCCAACATGGTGGT TTGTTGACTGGGTGTTGGTTAACTCTGTTCGCTTTTCACCGTGACACCCG CAGATAGCCGTGATACCGATCGTGGTGGGCGTAGCGATGGCGTGGTACAG CGAGATGGAGATTTCTAGGTCGGCGGCATCGGTTTCCCTGGTGTGCATCG TGCTGAACGCGATAAAGGTGGTCATCAACTCGGAGATGCTCACCGGGGAG TACAAGGTGAGACGGCTACGGCCGGTGCAATGCGAGACCATTTTGAAAGG AATACAGCAGTTAAATCAAAAATGGAACCTAACCCGCATTGAGACGGAAC TCCGTGAGATTCAATCGGTATTCCATACAGTGACGTAATGTTGGGTTGGC CGAATAGAAAAAACACCTTGTGGTACAATATAAGAAGAAATCGCCATCTC CCCTGCATCTCTGCCAGGTCAAACCGTACGTACTACTAGTATTTGTTTTG TTGTTTTTTGGAAGGCCAATACAGTAGGCCAGTATCTAATGTGGAATGCG GAATTGCCGTTCCTGATGCCAAGCGTTGTGCCATTTCTCTGCGCACTCTG GAAACATATTACAATACGTATGATTTTTTTCGCGCGCGGTCCTGATTCGT TGCGTGTCATGTATTACACCCCATGTATCTCGGACGCCAATGTATGCCTT TTGTGTACTGCTACCTGTATGTTGGAGGCAGCAGCAGCGTGGGCCACACA GGAAGAAGGCTATGTTCACTGGATTTTGTATAGGCGTGATGTATGTAAGT AGTCCGAAACTGTTCAGTCAGTCGATCCATTCCACACCCCGAACGCTCTC ACCCTCGATTCCTCATTTCCCAGGTTACGCCGCTACATTTGCTCTCTCGG GTCTCGCCCATGACCCTGGCTCAGGTGACGATGATGATGGCGTGATGATG ATGGTGATGAACAACGAGTTCCCGCACGTGTGTTGGGGGGCGTAGTGCTG CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATGGCGGCGTTTGTT GTTGTCTGGCCGCGGTTGTGGTGTGAGAACTGAGAAATGCTCGCATCACA AGTATCTGCGCGATACTGAGCACTATGAAGGCGCACATTGAGGTGCACTT ATTCAGTACACCAACAACAGCAGTGAACCCTACCTTCCAGCTGAAGGTTT ATTGGGGTATGTTTCTCGGAACCTATTGAACTAACTTGGTGTGACGTGTT GATGTCGAAAGGCAGACAGACGCCTTTAATACGGGACGCTTTGCAGCATG CCGGCTCTCCTCCTCCCCAAATCCTGGCGGCGTCCATTTACCTTCGCGTC GAACGGCTGGACGTTTGGGCGGGCACACACAGGTTTCGACGTTTGCGGTC TTCCACGGGGAGGTGACCGGCATGTTGGGGCATTGGAGCGAGATCCTCAC CGGCTGGGCGCCGCACGTGATCGCGCTCACCGGCTTCGTGTCGTTTATAT TGACGGTGCTTTCCATGCATGCCACCAAGTTCGCCACGCCGCTGACCGTG AGCGTCATGGGAGCTTTGAAGCAGGCGAGAGGGCGCTGGTCGTTACAGCA GTATCGGCGACGAACAAAAGCGCCAAACATTACGTCTCTGTATGGAATAC CGTTTGAACCCCATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTCCATC TTTGATTCTTTGTTTTATTTTAAAAGCTACTCTTTGGGCACACTTCCTTG GTTGGCCCCGCTGTTAGCGTTCCTTGGGCGTGTTTTGAAACGAAATCAAC TGGTTTTTATTTCCAAATCAGGAAAGCAAAGGCAAAACATCCCCACAAGA ATTATTTTAGGTGTATGTGTGGTTTAGCGTCGACCCCGCGACGCGGTTGA CCAATGGTTTGTTTTCGCGGTGATCTCATCGCCTCGAAGGGGGACAGATT CCCAGGGTTCTGTTTCAACATATCTCGTGACAACAGTGTTGTTATCCCGT CTCGTTTGCTACTTTCGGCCTGTTGTGTTATTACACCGCTGCCGTTTCTT ATTGGCCCCGCTTCCCTTCCGCAGATCTTAGTCGCCGGTTTCACGGTCTT CAAGATGCAGAGGTCAGTTTCTCGCCTCAACGTTGTCGGCCTCGTCTTCG CGCTTGTCGGCGCTGTGAGGTACACCATCGTCAGCAGAAGGGAGAAGAAG AGGCGCGAGAGACGCGACGCGATTTCCTCCGGCTCGGCCAAAAAGGCGGC GCAACCCCCAAGAGGCAAAGGTCCCGCCGCACCGCTACTTCCAGTCACTG CCGCCAGCACTACTGCTGTCAAGATCCCCTCGTCTGCTCGTGGGAGCAGT GTTATGGTGAACGGCAAACGAACGGTTGGAGGCGATGAGCGCAAGGGTGG AAAGGTGGACGGAGAGAAAGTGAAGACGAAGCCGTGGAGCTGGTGGAGTA GGAATAAAAGTGACGCTTCTCGACGGAACCGATAGATACAATACCAAAAG TGTTTAAGGTTGTGGTGTAGCGGCGAGCCCTTTGCAGCAGGAGAGGTGCT GATGTGAACAATGGAGTGGCCTTAAGCTATCTTCCTCCCCTGGGTCTTCG CTCTCCGGTCGATGTGTGTGGCAGTGATGTAGGTAGTTTTGTAAGAACGT GTTAGATCGGCGTGAACAGTCCATTGTTTGTCTGTTGTGTTACAGCGGTC TCGTGCTGCAGTGAATTGAGGTGATTTTCTCCGCCCTTTTTTATTATGTA TCTAGTATACCATCGTGTCTCTTTGTTTCCTAGGTGTTGCCGGGCATCCC GAAGGTCTTCCCAAAACCCCTACAAAAATAGCCGACGGGTGAGTTCGCCG AGTTCGACTGTCACGAAAATATTTCCTCAAGGTCAAGTGCTTCGTGCTTT CCAGGCTGTCGCAGGTGAGGTGCCTGTCTGTCCGGCGTATTTCCTGTTTA CGATCTTGAGTACCGTCCTTACAGCCAATCAACGGAGTTGAGGCAGATTC AGCCAGCAGCGTAGCGCCGGCTTCCCGACGCTTGTGACTACATGGTATTT GCCCCCCTCCTCCGCCCCTACACGTCGACATTTTCGCTACATACTACAGT AGTCACGAATTGCCATTTCCTTAGGAAAGTATGTACCATTGTTTCAGGCA TGGAGTGAGAGTTGGAGTTCGCCCAGATTAAGTAGAATGATGTGTGTGTG TACTGTGTGCATAGTATTGACGTTTCTAGCGAAACAGCTCGGGGCTTTGC TGGTAAACACGACGTGCACCGTCGAGGCACAAGCCGTGTGAGTGCCCTTT GTTTTCAATGCAAGACCTGTTGAGTGGGTCTCGTTGGAGAGAACGCCGGA GCTCTCGTGGTTGCGTCGAAAAACAAGTCAAAGTACGCCATGGTGGAGAT AGCAAGCACGTGTCGAAAAGGATGCCTTCGCAGGCGGGGCGGGTTTTGTG GGGCGTGATGCTCTCTCCATAGCACGGGGGCGATGTTGCATGTACGAAAG GGTTTGGTTGAGAGTTTATCGCTTTGTCGCACACCTCTTGTCTAGTTGAG TTGAGAGACTTGCTTGTACTCAGAAGTAGATACGTTGTTTAATTAAGTTG AGCCCCTGGTGAGATTTAAACCCTTCGTGGAACTCCCAGCAGCCATGATT TTGGGCTTGCTTCGTGGAACTCCCAGCAGCCATGATTTTGGGCTTGAAGC CTTATGTCTATACAGCGTGCCCGAGTTTGACAGTGATGAAGGAAAGCCAG CCAAGCGAGTCAGGTGCAGTCTATCGCACTCCCGTTTTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5568:1435..6724+

>mRNA_L-elsbetiae_contig5568.13878.1 ID=mRNA_L-elsbetiae_contig5568.13878.1|Name=mRNA_L-elsbetiae_contig5568.13878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1776bp|location=Sequence derived from alignment at L-elsbetiae_contig5568:1435..6724+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGCAAGCAGTGGGCCCCCTACTGGTCTTGCTGCTAGCAACGAGGGT
CTTCAAACGCTCAGTCTCTCGGGAGAGAAAGATGCTGCAAGCAGTGGGCC
CCCTACTGGTCTTGCTGCTAGCAACGAGGGTCTTCAAACGCTCAGTCTCT
CGGGAGAGAAAGATAGCCGTGATACCGATCGTGGTGGGCGTAGCGATGGC
GTGGTACAGCGAGATGGAGATTTCTAGGTCGGCGGCATCGGTTTCCCTGG
TGTGCATCGTGCTGAACGCGATAAAGGTGGTCATCAACTCGGAGATGCTC
ACCGGGGAGTACAAGATAGCCGTGATACCGATCGTGGTGGGCGTAGCGAT
GGCGTGGTACAGCGAGATGGAGATTTCTAGGTCGGCGGCATCGGTTTCCC
TGGTGTGCATCGTGCTGAACGCGATAAAGGTGGTCATCAACTCGGAGATG
CTCACCGGGGAGTACAAGGTTACGCCGCTACATTTGCTCTCTCGGGTCTC
GCCCATGACCCTGGCTCAGGTTACGCCGCTACATTTGCTCTCTCGGGTCT
CGCCCATGACCCTGGCTCAGGTTTCGACGTTTGCGGTCTTCCACGGGGAG
GTGACCGGCATGTTGGGGCATTGGAGCGAGATCCTCACCGGCTGGGCGCC
GCACGTGATCGCGCTCACCGGCTTCGTGTCGTTTATATTGACGGTGCTTT
CCATGCATGCCACCAAGTTCGCCACGCCGCTGACCGTGAGCGTCATGGGA
GCTTTGAAGCAGGTTTCGACGTTTGCGGTCTTCCACGGGGAGGTGACCGG
CATGTTGGGGCATTGGAGCGAGATCCTCACCGGCTGGGCGCCGCACGTGA
TCGCGCTCACCGGCTTCGTGTCGTTTATATTGACGGTGCTTTCCATGCAT
GCCACCAAGTTCGCCACGCCGCTGACCGTGAGCGTCATGGGAGCTTTGAA
GCAGATCTTAGTCGCCGGTTTCACGGTCTTCAAGATGCAGAGGTCAGTTT
CTCGCCTCAACGTTGTCGGCCTCGTCTTCGCGCTTGTCGGCGCTGTGAGG
TACACCATCGTCAGCAGAAGGGAGAAGAAGAGGCGCGAGAGACGCGACGC
GATTTCCTCCGGCTCGGCCAAAAAGGCGGCGCAACCCCCAAGAGGCAAAG
GTCCCGCCGCACCGCTACTTCCAGTCACTGCCGCCAGCACTACTGCTGTC
AAGATCCCCTCGTCTGCTCGTGGGAGCAGTGTTATGGTGAACGGCAAACG
AACGGTTGGAGGCGATGAGCGCAAGGGTGGAAAGGTGGACGGAGAGAAAG
TGAAGACGAAGCCGTGGAGCTGGTGGAGTAGGAATAAAAGTGACGCTTCT
CGACGGAACCGATAGATCTTAGTCGCCGGTTTCACGGTCTTCAAGATGCA
GAGGTCAGTTTCTCGCCTCAACGTTGTCGGCCTCGTCTTCGCGCTTGTCG
GCGCTGTGAGGTACACCATCGTCAGCAGAAGGGAGAAGAAGAGGCGCGAG
AGACGCGACGCGATTTCCTCCGGCTCGGCCAAAAAGGCGGCGCAACCCCC
AAGAGGCAAAGGTCCCGCCGCACCGCTACTTCCAGTCACTGCCGCCAGCA
CTACTGCTGTCAAGATCCCCTCGTCTGCTCGTGGGAGCAGTGTTATGGTG
AACGGCAAACGAACGGTTGGAGGCGATGAGCGCAAGGGTGGAAAGGTGGA
CGGAGAGAAAGTGAAGACGAAGCCGTGGAGCTGGTGGAGTAGGAATAAAA
GTGACGCTTCTCGACGGAACCGATAG
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