prot_L-elsbetiae_contig5567.13877.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5567.13877.1
Unique Nameprot_L-elsbetiae_contig5567.13877.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length463
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5567.13877.1 vs. uniprot
Match: A0A6H5KYI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI0_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 4.090e-71
Identity = 203/469 (43.28%), Postives = 246/469 (52.45%), Query Frame = 0 
Query:   16 PCLSAGQKTRAVQLLIVWVCWVFFQIEGGSPGTSAILFSLAVYLAEGPRSKRRPGKSPRKCMRRDALSWAEDGSSAASLELTANLPHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAXXXXXXXXXXXXKPPEPPASSAEQTSFEAAMTRLAGAAEL-GTEALIYVRRADVAEMVDVLMDHARSPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRRLGSPA--VDGPRGGGGRSGRRVASASPS-SQVAPTPTVSGGRALFQDG--MTPPLRDVTRTNSSSTRVTVRARSPXXXXXXXXXXXXXXXXXX-RRVRGLQEXXXXXXXXXXXXXXXXXXXAVPACSPACVVGMTPIALTKNSGAPLAAAGGVP--------------STEEKRKFT-GPSVLETKVGENVAAAAXXXXATPREAKIKYTPVQRTAGKREGQDFDDFWSSGWG 462
            P  S G++ + +QL+IV VCW+F QIEGGSPGT+A+LF+LAVYL   P  + RP ++P K    DALS AE+G+SA S E+ ANL  TGEL +          FL   +      APGT+              P   ASSA    FE A+TRLAGAA   GTE LIYVRRADVA +VD LMD  R+P GPTVTSPA ARL LVRRS R+D P G GRRA SPV  G+R   AF R G P               RR  SASPS S+ APT    GG+ALFQD   MTPP R + R + +ST++T R RSP                   RR+RG  E                        SP     MTPIAL KN+ APL+AAG +               ST+EK++    P  L T + ++         A+ R+ KI+  P      K E  DFDDFWSSGWG
Sbjct:    9 PAWSKGEQAKVLQLVIVSVCWLFLQIEGGSPGTTAVLFTLAVYLV--PTKRHRPSRNPPKSFWPDALSSAENGNSARSCEIAANLLLTGELEA----------FLDKSSDGVRRQAPGTSTQESAPAAAT----PNNTASSARGNPFEEALTRLAGAASTCGTEPLIYVRRADVAVIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKD-PRG-GRRALSPVRRGERAALAFHR-GRPGRGXXXXXXXXXXXXRRAVSASPSMSRGAPTIAPPGGKALFQDSNMMTPP-RVLARPSPASTKITFRPRSPPPPSPSGDGEPVGNSTVGARRIRGGMEGKQHRVLQRVH-------------SPR-AFSMTPIALAKNNEAPLSAAGALVTSGGEGGSQSGVMRSTDEKKQTKLKPPALITTMMQDGCDVTPCSTASDRK-KIRCVPA-----KGEASDFDDFWSSGWG 437
[Close]
BLAST of mRNA_L-elsbetiae_contig5567.13877.1 vs. uniprot
Match: D8LQL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQL1_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.180e-23
Identity = 96/201 (47.76%), Postives = 108/201 (53.73%), Query Frame = 0 
Query:   96 LTANLPHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAXXXXXXXXXXXXKPPEPPASSAEQTSFEAAMTRLAGAAEL-GTEALIYVRRADVAEMVDVLMDHARSPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRRLGSPAVDGPRGGGGR-------SGRRVASASPS-SQVAPTPTVSG 287
            + ANL  TGEL +          F    +      APGT+              P   ASSA+   FE A+TRLAGAA   GTE LIYVRRADVA +VD LMD  R+P GPTVTSPA ARL LVRRS R+D  +  GRRA SPV  G+R   AF R G P     RG G          GRR  SASPS S+ APT   SG
Sbjct:    1 MAANLLLTGELEA----------FFDKSSDGVRRQAPGTSTQESAPAAAT----PNNTASSAQGNPFEEALTRLAGAASTCGTEPLIYVRRADVAAIVDALMDVVRTPAGPTVTSPAFARLNLVRRSGRKD--SRGGRRALSPVRRGERAALAFHR-GRPG----RGDGXXXXXXXXSGGRRAVSASPSLSRGAPTIAPSG 180
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5567.13877.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYI0_9PHAE4.090e-7143.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQL1_ECTSI2.180e-2347.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..60
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 61..462
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5567contigL-elsbetiae_contig5567:6532..9395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5567.13877.1mRNA_L-elsbetiae_contig5567.13877.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5567 6354..9766 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5567.13877.1 ID=prot_L-elsbetiae_contig5567.13877.1|Name=mRNA_L-elsbetiae_contig5567.13877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=463bp
MVSSRARSSAALPAAPCLSAGQKTRAVQLLIVWVCWVFFQIEGGSPGTSA
ILFSLAVYLAEGPRSKRRPGKSPRKCMRRDALSWAEDGSSAASLELTANL
PHTGELSSNSGTRAHKVEFLTPLAAAPGNAAPGTAAAAAAAAAAATAKPP
EPPASSAEQTSFEAAMTRLAGAAELGTEALIYVRRADVAEMVDVLMDHAR
SPEGPTVTSPALARLALVRRSKRRDLPNGSGRRARSPVPCGKRPLSAFRR
LGSPAVDGPRGGGGRSGRRVASASPSSQVAPTPTVSGGRALFQDGMTPPL
RDVTRTNSSSTRVTVRARSPAGSPSGENSRNGNGNAGARRVRGLQEGKQR
RLRQRVRSPSPSSSAAVPACSPACVVGMTPIALTKNSGAPLAAAGGVPST
EEKRKFTGPSVLETKVGENVAAAAAAAAATPREAKIKYTPVQRTAGKREG
QDFDDFWSSGWG*
back to top