mRNA_L-elsbetiae_contig5563.13872.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: D8LDR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR1_ECTSI) HSP 1 Score: 202 bits (513), Expect = 5.830e-64 Identity = 108/143 (75.52%), Postives = 117/143 (81.82%), Query Frame = 1 Query: 7 RNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQNPFRQSLQDIPVAPADGAGAGAGESGDISEDMSWGFDQTFFGEEGDGDGDDEPDDYDDI 435 R+ RTRLFESIR NREKIGRAM+ LRDAMR+GD+ELAERLKAFIMHLR +DPQFATQDAMD ALEQGLFSTAAKLKLKL +INQNPFR SL D+ + GD SEDMSWGFDQTFFGEEGD DD+PDDYDDI Sbjct: 33 RDRRTRLFESIRGNREKIGRAMNSLRDAMRTGDEELAERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEEINQNPFRHSLLDVSAEDGXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNI-DDDPDDYDDI 174
BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: A0A6H5L051_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L051_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.150e-59 Identity = 109/148 (73.65%), Postives = 117/148 (79.05%), Query Frame = 1 Query: 7 RNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQNPFRQSLQDIPVAPADGAGAGAG-----ESGDISEDMSWGFDQTFFGEEGDGDGDDEPDDYDDI 435 R+ RTRLFESIR NREKIGRAM+ LRDAMRSGD+EL ERLKAFIMHLR +DPQFATQDAMD ALEQGLFSTAAKLKLKL DI QNPFR SL D+ DG + GD SEDMSWGFDQTFFGEEGD DD+PDDYD+I Sbjct: 78 RDRRTRLFESIRGNREKIGRAMNSLRDAMRSGDEELVERLKAFIMHLRKRDPQFATQDAMDEALEQGLFSTAAKLKLKLEDIKQNPFRHSLLDVSE---DGXXXXXXXXXXXDGGDTSEDMSWGFDQTFFGEEGDNI-DDDPDDYDNI 221
BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Match: A0A836CMC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC9_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.080e-10 Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1 Query: 25 LFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRGKDPQFATQDAMDAALEQGLFSTAAKLKLKLADINQ-NPFRQSLQDIPVAPADGAGAGAGESGDISEDMSWGFDQTF 378 + ES+RS +K+ + +LR A GD +L+ + LR +DP F+ +D AA+ +G F+ AAKLKL + + Q NP R +D D EDMSWGFD +F Sbjct: 1 MSESVRSRIDKVKK---KLRKAKNDGDSTEVGKLREALSALRAQDPLFSREDQYKAAILEGRFAAAAKLKLTIDKMKQENPLRPPAED---------------DHDPGEDMSWGFDPSF 101 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5563.13872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5563.13872.1 >prot_L-elsbetiae_contig5563.13872.1 ID=prot_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp MARNHRTRLFESIRSNREKIGRAMDRLRDAMRSGDDELAERLKAFIMHLRback to top mRNA from alignment at L-elsbetiae_contig5563:8679..10177- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5563.13872.1 ID=mRNA_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1499bp|location=Sequence derived from alignment at L-elsbetiae_contig5563:8679..10177- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5563:8679..10177- >mRNA_L-elsbetiae_contig5563.13872.1 ID=mRNA_L-elsbetiae_contig5563.13872.1|Name=mRNA_L-elsbetiae_contig5563.13872.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig5563:8679..10177- (Laminarionema elsbetiae ELsaHSoW15)back to top |