mRNA_L-elsbetiae_contig556.13870.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig556.13870.1 vs. uniprot
Match: A0A6H5KDJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ9_9PHAE) HSP 1 Score: 951 bits (2459), Expect = 0.000e+0 Identity = 645/1142 (56.48%), Postives = 729/1142 (63.84%), Query Frame = 1 Query: 1 AAPWRRRRDSRRVQRSSMTLSINLGYFISTRVVAWG--------WIHPGGTSIPPRKQK----CCSSSWQRCDVKHWRGRSAS-PRSSIGRSHMLMSVIVANDSSGGSTSGSINEATAASSPSSPSPEGKKSA--PQRLPPLVSPAPR--KVNG-------AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGEKDEDGEKKWGGPAGGTNMTSPSLNSEQQLNSERQQREHEMRRLGKKGMWREALAVLASIPEPSQR--QFVAAIAACDFSGEPRQALYAYVWLLGLSRVNALSYQ-------ESVLLVVRGLLLLGDASTALRVFHSSGVRVRGRSYKPGQTSADSALTMNTLYAVVIRAAQKAGDWREAVLLYREAEAASLGPSAATATAVFLACYGEQRYAAAASLASDALRPPWEEVTQRRLLTNKIIVACGRAGPDHYQQALDTYADLDRTIGVDGYTLTAVVDVLRRLRDWRRALPLLDRLVDLGVPADQGLRTSVNAVLSAMGPDNYRRARELAERAAAEWGVSGDIVTYGTLLLLASARLPPPAPL-SSGTAVVLPAAVVAAE--PGGLRRSPGAGRGRGVEGRLFEESEVAAAAERREDGKWETVNVFWRAVEAKAVPSEACLDMVVFALARDGLWEEASAFVQAIEEAGLTVSRHQREALLSALSNGERWQDVVSLVEAMLAKSLVVDNPTAGLAVKAYANLGLKKHWRSAISLMKQAQRASRGSD--AAADVLDASAWRYLLARLASEGLNGEAGSAMQAMVEAGVPVDKDSSAAVVVAAYKAGDHAAAVAWVDRLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETICPPSEGGYSARVRLRDDDAAAPGEGXXXAAGETTAEAVESGSGRGGVVVEINGLASTGAEAEGAGGRXXXXXXXXXXXXXGSRAAEKAESALSLFEVMWEREVPMNGVTYAIVICALLAAGREDEVLRLWTQAWSDPGAKKLRRDMANRVLGICRVQRRGGLAVRLLQLGARLAPKGQSRGKXXXXXXXXXXXXXXXXXXYWAAMEACERQGATAWRGALALADERDASPLPPDNLYSEAAAALVQEAAAAGVADAVEAASTRVWQTRE 3312 AAP RRRR+SRR+Q SSMTL + R AWG W HP G I P++Q+ S R D R S PR R +LMS + A S SSP PEG+ +A P+ LPPL+ PAP ++NG A XXXXXXXXXXXXXXXXXXXX + +KD E +WG TS + EMR+LGKKG WREAL VL SIP PS++ ++VAAIAACDF+ EPRQAL RV+ L Q ESVLLVVRGLL GDA+TALRVF SSGV +RGR YK G+T+ DSA TMN LYAVVIRAAQKAGDWR AV+LYRE EA GPSAATATAVFLACY EQ YAAAAS ASDALRPPWEEVT+RR+L NKIIVACGRAGPD+YQQALDT+ DLDRTIG DGYTLTAV+DVLRR+ DWRRAL LLDRL +LGV A++GLRTSVNAVLSAMGPDNYRRAREL E+A EWGV GD+VTYGTLLLLASARLPPPAPL ++GT + PAA AA PG + G G G + E G+WETVNVF AV AK VPSEACLDMV+F LARDGLWEEA+AFV+AI +AGL +REALLSALSNGE+W VV+LV++ML VVDN T GLA+KAYA LGL+ HWRSA+S++KQAQRASRG AADVLD SAWR LLA LASEGL+ EAG MQAM EA V VDKDS+AAVV+AAYKAGDHAAA+AWVDRL E+ICP SEGGYSARVRLRD A G G T EA SG E+NGL E + AA KA+ ALSLFE MW REVPMNGVTYAIVICALL A RED+VLRLWT AWSDP KKLR DM+NR LGIC+ QRRG LAVRLLQLGARL+PKG + YW AMEACER+GATAWR ALAL D+R+ SPLPPD+ +SEA A L+Q+AAA GV+DAV+AASTRVW+ RE Sbjct: 34 AAPCRRRRESRRMQHSSMTLGL-CALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQKVLDDSLRHRFDATFSRHSSGGCPRRGNRRPRVLMSSVAA---SXXXXXXXXXXXXXXXXXSSPFPEGEDAAALPRPLPPLLPPAPSTGQLNGGVSTTSAATLSEAARSSEANNINTXXXXXXXXXXXXXXXXXXXXENQKEDKDVCQENQWGV------STSQLEQXXXXXXXXXXAKAQEMRQLGKKGKWREALEVLRSIPGPSRQKQEYVAAIAACDFAREPRQAL----------RVHGLMVQQGLEPTPESVLLVVRGLLQAGDATTALRVFRSSGVGIRGRPYKAGRTADDSASTMNALYAVVIRAAQKAGDWRLAVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAAASFASDALRPPWEEVTRRRVLMNKIIVACGRAGPDNYQQALDTFEDLDRTIGADGYTLTAVIDVLRRVGDWRRALALLDRLTELGVTANRGLRTSVNAVLSAMGPDNYRRARELVEKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGATGTPSLAPAAAAAAAVPPGSAYPADGPFGGEG--------------GQEEESGQWETVNVFRWAVAAKEVPSEACLDMVMFGLARDGLWEEATAFVEAIGQAGL-----KREALLSALSNGEQWAGVVALVKSMLVDLEVVDNATVGLAMKAYAKLGLETHWRSALSVIKQAQRASRGRSRVVAADVLDGSAWRCLLAGLASEGLHEEAGVVMQAMAEARVRVDKDSTAAVVLAAYKAGDHAAAIAWVDRLDRAGLPVSRNGYTAGVNACCALGKPDAAISILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSG-------GRLTEEADGSGGEE-----ELNGLFRARERRE------DGERDEPAGLIRDTTAAAKADRALSLFEEMWAREVPMNGVTYAIVICALLRAEREDQVLRLWTLAWSDPRTKKLRTDMSNRALGICKDQRRGALAVRLLQLGARLSPKGLN------------DVAWPGPGPYWVAMEACEREGATAWRDALALVDKRNRSPLPPDDSFSEAGAGLLQQAAALGVSDAVQAASTRVWEKRE 1106
BLAST of mRNA_L-elsbetiae_contig556.13870.1 vs. uniprot
Match: D7FVZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVZ5_ECTSI) HSP 1 Score: 692 bits (1785), Expect = 1.010e-233 Identity = 452/715 (63.22%), Postives = 499/715 (69.79%), Query Frame = 1 Query: 1222 NKIIVACGRAGPDHYQQALDTYADLDRTIGVDGYTLTAVVDVLRRLRDWRRALPLLDRLVDLGVPADQGLRTSVNAVLSAMGPDNYRRARELAERAAAEWGVSGDIVTYGTLLLLASARLPPPAPLSSG----------------TAVVLPAAVVAAEPGGLRRSPGAGRGRGVEGRLFEESEVAAAAERREDGKWETVNVFWRAVEAKAVPSEACLDMVVFALARDGLWEEASAFVQAIEEAGLTVSRHQREALLSALSNGERWQDVVSLVEAMLAKSLVVDNPTAGLAVKAYANLGLKKHWRSAISLMKQAQRASRGSD--AAADVLDASAWRYLLARLASEGLNGEAGSAMQAMVEAGVPVDKDSSAAVVVAAYKAGDHAAAVAWVDRLRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETICPPSEGGYSARVRLRDDDAAAPGEGXXXAAGETTAEAVESGSGRGGVVVEINGLASTGAEAEGAGGRXXXXXXXXXXXXXGSRAAEKAESALSLFEVMWEREVPMNGVTYAIVICALLAAGREDEVLRLWTQAWSDPGAKKLRRDMANRVLGICRVQRRGGLAVRLLQLGARLAPKGQSRGKXXXXXXXXXXXXXXXXXXYWAAMEACERQGATAWRGALALADERDASPLPPDNLYSEAAAALVQEAAAAGVADAVEAASTRVWQTRE 3312 NKIIVACGRAGPDHY+QALDT+ DLDRTIG DGYTLTAV+DVLRRL DWRRAL LLDRL +LGV A++GLRTSVNAVLSAMGPDNY RAREL +A EWGV GD+VTYGTLLLLASARLPPPAPL S +P A +A P G P G G E E G+WETV+V AV AK VPSEACLDMVVF LARDGLWEEA+AFV+AI AGL VSRHQREALLSALSNGERW VV+L ++ML VVDN TAGLA+KAYA LGL+ HWRSA+S+MK+AQRASRG AADVLD SAWR LLA LASEGL+ EAG+ MQAM EAGV VDKDS+AAVV+AAYKAGDHAA XXXXXXXXXXXXXXXXXXXXXXXXXXXX E+ICP SEGGYSARVRLRD A G G EA SG G G E+NGL+ E GGR + AA KA+ ALSLFE MW REVPMNGVTYAIVICALL A REDEVLRLWT AWSDP KKLRRDM+NRVLGIC+ QRRG LAVRLLQLGARL+PKG + YWAAMEACER+GATAWR ALAL D+R+ SPLPPD+L+SEA A L+Q+AAA G++DAV+AASTRVW+ +E Sbjct: 2 NKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNELGVTANRGLRTSVNAVLSAMGPDNYHRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGSAGXXXXXXXXXXXXXXXXXXXVPRA--SAYPAG---GPFGGEG----------------GEEEESGQWETVDVLRWAVAAKEVPSEACLDMVVFGLARDGLWEEATAFVEAIGLAGLKVSRHQREALLSALSNGERWAGVVALAKSMLVDLNVVDNATAGLAMKAYAKLGLETHWRSALSVMKKAQRASRGGSRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVMVDKDSTAAVVLAAYKAGDHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSG-------GRLPEEADGSG-GEG----ELNGLSHARGRGE-DGGRDEPAGLRRD-----TTAAAKADRALSLFEEMWTREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRRDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLN------------DVAWPGPGPYWAAMEACEREGATAWRDALALVDKRNGSPLPPDDLFSEAGAGLLQQAAALGISDAVQAASTRVWEKQE 665 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig556.13870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig556.13870.1 >prot_L-elsbetiae_contig556.13870.1 ID=prot_L-elsbetiae_contig556.13870.1|Name=mRNA_L-elsbetiae_contig556.13870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1146bp AAPWRRRRDSRRVQRSSMTLSINLGYFISTRVVAWGWIHPGGTSIPPRKQback to top mRNA from alignment at L-elsbetiae_contig556:25101..33724- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig556.13870.1 ID=mRNA_L-elsbetiae_contig556.13870.1|Name=mRNA_L-elsbetiae_contig556.13870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8624bp|location=Sequence derived from alignment at L-elsbetiae_contig556:25101..33724- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig556:25101..33724- >mRNA_L-elsbetiae_contig556.13870.1 ID=mRNA_L-elsbetiae_contig556.13870.1|Name=mRNA_L-elsbetiae_contig556.13870.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6876bp|location=Sequence derived from alignment at L-elsbetiae_contig556:25101..33724- (Laminarionema elsbetiae ELsaHSoW15)back to top |