mRNA_L-elsbetiae_contig556.13868.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig556.13868.1
Unique NamemRNA_L-elsbetiae_contig556.13868.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig556.13868.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.440e-23
Identity = 66/94 (70.21%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:  592 AAHFKMVADRFRALMERRERKLEEAMSDPQTRRDLEVMFPGVITGDY-VTLLAGVRGMEEEDFQDLLDAARKRRREEELGAENG-HEGSRKVPK 867
            A H K  A RFRALM+RRER LEEAMSDPQTR DL  MFPG    DY  TLLAGVRGMEE +FQ+LL  ARKRRR E +G+ENG  EG RKVPK
Sbjct:  144 AEHLKKAAARFRALMDRRERSLEEAMSDPQTRTDLAAMFPG--DDDYHTTLLAGVRGMEEGEFQELLSTARKRRRGEGVGSENGVREGIRKVPK 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig556.13868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLN8_9PHAE1.440e-2370.21RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig556contigL-elsbetiae_contig556:3892..7318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-14_005260.1
Exons2
Model size1012
Cds size762
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig556.13868.1prot_L-elsbetiae_contig556.13868.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig556 3892..7069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.0572534-CDS-L-elsbetiae_contig556:3891..40861622816587.0572534-CDS-L-elsbetiae_contig556:3891..4086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig556 3892..4086 -
1691683666.3812342-CDS-L-elsbetiae_contig556:3891..40861691683666.3812342-CDS-L-elsbetiae_contig556:3891..4086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig556 3892..4086 -
1622816587.0702946-CDS-L-elsbetiae_contig556:6502..70691622816587.0702946-CDS-L-elsbetiae_contig556:6502..7069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig556 6503..7069 -
1691683666.394003-CDS-L-elsbetiae_contig556:6502..70691691683666.394003-CDS-L-elsbetiae_contig556:6502..7069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig556 6503..7069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.0836346-UTR-L-elsbetiae_contig556:7069..73181622816587.0836346-UTR-L-elsbetiae_contig556:7069..7318Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig556 7070..7318 -
1691683666.40575-UTR-L-elsbetiae_contig556:7069..73181691683666.40575-UTR-L-elsbetiae_contig556:7069..7318Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig556 7070..7318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig556.13868.1

>prot_L-elsbetiae_contig556.13868.1 ID=prot_L-elsbetiae_contig556.13868.1|Name=mRNA_L-elsbetiae_contig556.13868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=254bp
MDSSASGGRDREGNTSSPSSSEHTHPAAAAADDSKPSSAKMGSPPAGGCS
GAARAGSPGSGKSSAPPSDAEQHAPPSLGQSSGDMDEAGAPGRDPAGDRR
RNQRTPPGEGVEKDAAHFKMVADRFRALMERRERKLEEAMSDPQTRRDLE
VMFPGVITGDYVTLLAGVRGMEEEDFQDLLDAARKRRREEELGAENGHEG
SRKVPKTAAVSSPSSAPPRRSSNSSSGGGAPPPPASWEGGDGRRGQYYAQ
PPPP
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mRNA from alignment at L-elsbetiae_contig556:3892..7318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig556.13868.1 ID=mRNA_L-elsbetiae_contig556.13868.1|Name=mRNA_L-elsbetiae_contig556.13868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3427bp|location=Sequence derived from alignment at L-elsbetiae_contig556:3892..7318- (Laminarionema elsbetiae ELsaHSoW15)
CATTTGAAAGAGCCAAAAAAACGAATGAAAAATTTCGTGTACCCCCGGCT
CTCCCGTTCTCCGTTCTCCCGTATTTTTCCAGACACACATACTTTCTCGA
TCCCCACGCTTGCGCTATCTCTCTCTCTGCCTCTCTTGCGGCTGGCGTGG
TAGACGAACACAGTGGCAGTGGCCGTCACGCTCTCTTCGCTGGGGCGTGG
GGGCTGGTGCCGAACTCGTGCGTGCGGTGTCGTTTTTTTGCCGAAAAAAA
TGGACTCCTCCGCTAGCGGAGGTAGAGACAGGGAAGGCAACACCTCCTCC
CCCTCTTCCTCCGAGCACACACACCCGGCTGCGGCGGCCGCCGACGACTC
CAAGCCCTCGAGCGCTAAGATGGGCTCCCCGCCGGCGGGGGGCTGTTCCG
GCGCAGCGAGGGCAGGCTCCCCTGGCTCTGGGAAAAGCTCGGCTCCTCCT
TCTGATGCGGAGCAACACGCCCCGCCTTCACTCGGCCAGAGCAGTGGTGA
TATGGACGAAGCGGGAGCCCCCGGGCGAGACCCGGCGGGGGATCGACGCC
GGAACCAACGAACCCCTCCAGGCGAGGGTGTGGAGAAGGACGCGGCTCAC
TTCAAGATGGTGGCCGACCGCTTCAGAGCCCTTATGGAGCGGCGCGAGCG
AAAGCTCGAGGAGGCCATGAGCGATCCCCAGACGAGGAGGGACCTAGAAG
TAATGTTTCCGGGCGTGATCACGGGGGACTACGTCACGCTGCTCGCGGGC
GTAAGGGGCATGGAGGAGGAGGACTTCCAGGACCTCCTGGACGCTGCGAG
GAAGCGCCGCAGAGAGGTGAGCGGGTGTCGACTAACCGTTTTTTTTCGGC
GGGGGTCGGGGGCGGAAGAGAGGGTCCGGCTGTCGCACTAGAAACACTTG
GAAATTGTGTGCGCTGACTTTTCTAAACCCCTTCGACGTCATCTCCGATT
CGAGAGCTCTTTGCTCTTCTTTGGGGCCTGTCTGCCGCGGAGACGAACCT
GCCCCCAATCGCGGCCATGGCGCCTCCCTCTATTGGCTGTGCTTCTCTCT
GTGGTGAAGAGGCGCGAAGGGTTTGGGTCGGCTTTAAACCCGGAGGCCGC
ATGCGCCTCTCTTCCGGAGAGAGCGAGAATAAAAGCTCACCTCGCGCAAT
AAAAAAAAAGAAGCGGGGCAAGTTGTGTGCGTGAAAAAAAAGGGCGAGAA
ATTTTCGATTATCCTATTTTCCGTTGTTGTCTCCTATCGTGACCCTTGGG
GGGCAACCATTAAACACCGAGCGAGCCTCTTTCGCCCCTCTCGTGACTCG
TGTGTGCGCCCTTCATGACTCTTTCAACAACCAGCGGATTCTTTTCGTGG
GTGGGAAGGGCCCGGCGGATTATTTCGGCTCTGAGACCGCGTCACTTTGT
ACAAAAAACAAATGTTAATGTTTCACCCGATCCTCTACGTGTGTCCACGT
CTTCTTGCAAAGGATCTGATCTCTTTAGTTCAAGAGGATCCCACATCCTA
CTCGACCCATTACGGCGCCACTGTAAAACACGCGTAGTTTGGTACTTACT
GCCTGGCGTCTGCTTGGAACTCAAGCTAGATCCTGGCTTTCCCACACCAT
ATCTACAGAGATGTTTAGGGTTGATTAGTTTATTGAAAACGTCGGATTTT
CTGTGAATGGTGCCTCTAAAAAACTCTGAAAAACTCTCAAACCAAACAAT
TGCCCGCGTCTCGAGTCGAGTGGAGACGAGGATGGTTCGGAACCATAATA
TGTACATACAATTTCCCAGAAGAAGGATCACGGATTGTGTGTGTGGTATG
TGTTATGTACCCATCTACCATCTCTACCCTCCTACGTTGTCATCTTGGAA
AGCAATCAGGTAATCAATCAATCATCTGGTTGGTTGTAGTCTACATGTAC
GGTATCTTGGAACGTAAGTCTCGACCCTCTAGACATGTAAATAAGCAGTA
GATGAAGTGTAAAATGCCCTTCGGCAGAGGGAAAATGGTTGTGCACAGCG
CACGCTGTTGCTGTGTCTGGTACTATGTTGTACTGGCTACCACGTGCTTC
GCCGCGGGTGGCGAAACATGGGTATCTGTCTACATGGGTATTTTGTCTTT
TACCGTTCCGATCTCTCCGTCCAGTACCAATATCCTACTAATCCAACTCT
TGATGCGGTCAATTCCCGTGGTCACAGGCTAACTTACACCCAACAGAAGA
TACACGAACAATAAAATGGACCCGAAGAGCCAGCAAAGCAACAATAAAAC
AGATAACGAATCTATTGTAGAGCCCTCCGCTCCCCTCTACACGCTATGCG
AGGTAAAAACAAACTGGAACAGCCAACACCACTATCTTGGTACACAAAGT
TTTCGGGTAATACGAAAATGCCCCGCGGGGGCGTTCTGGAATGGTATATT
GTTTTGTACTCCTACGAATAAGAGAGGCGCGATCTCTTTCCGAGTAAAAT
AAGTCCAGGGGGCGAAAAAGCCGACGGCGGCGTATTGTATGCAGTCTCAT
TTTTCACACCTTTCCCACAGCCGACGGCATGTAGGCGATGTCGGGTCTCG
GCGGTTGCTGTGTTTATGTACGTGCAGCACAATGCAAGATCTCAAAAGAC
GAGCGATTGGAGAAGCTTGTCCCCGTTCACGGAATATTTGCTCGAGTACC
GAAAGTGCCGTGGATGCCAATGATGCCGCCCATGATGCCGCCCCGTGAGA
CGCCCGGAAACAGCCCAGAACGCCCCCGGGATGTTTGCGAAGTTTTTAAT
TAATGTCTACATACAAATGTCAGCAGTCTACGTCCAGTCTGTGAAAGAGT
CGTTTGTACTTTTTAAGCGGTTTTAAGGGAAGGGAGGGGGGGGGGCGAGC
TTAGAGGGTGTTTCGAGGGCATTTTACACTATTGCTGACGTTTCTCGCAC
GTCAGATTGGGTCCTATTTTTTTCTCGTCTTGCTGAAATAAAAAAACAAA
GTTATCCCCCTCCTCGCCCGTGGGATCCGACTGCGTCTACATATCTACTT
GGACGAGTGCAGAAGGCATTCACGATCACTAGAGAGGATACAATACAACA
TTCAGATGCCCACCGCCCCCCTCCTTAATTTTCTGATGAATTAATGTTTT
AACTGCTGCCCCAACAATGGTTGTGCTGGGTGACCGACCGCCCAGAACGC
CTTCGAACTCTCGCAAATGATGTACTTCGTATGTCTCTATGTATGTGTAC
CGATGTACGTGCGTTGCGTACATAAACAGCAGGAAGAGCTCGGAGCGGAG
AACGGCCACGAAGGAAGCCGCAAGGTACCCAAAACCGCAGCAGTCTCGTC
CCCGTCTTCGGCGCCACCCCGCCGGTCCTCCAACAGCTCCTCCGGGGGGG
GGGCGCCTCCGCCGCCAGCGAGTTGGGAAGGGGGCGACGGGCGGCGTGGC
CAATACTACGCCCAGCCGCCGCCACCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig556:3892..7318-

>mRNA_L-elsbetiae_contig556.13868.1 ID=mRNA_L-elsbetiae_contig556.13868.1|Name=mRNA_L-elsbetiae_contig556.13868.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1524bp|location=Sequence derived from alignment at L-elsbetiae_contig556:3892..7318- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACTCCTCCGCTAGCGGAGGTAGAGACAGGGAAGGCAACACCTCCTC
CCCCTCTTCCTCCGAGCACACACACCCGGCTGCGGCGGCCGCCGACGACT
CCAAGCCCTCGAGCGCTAAGATGGGCTCCCCGCCGGCGGGGGGCTGTTCC
GGCGCAGCGAGGGCAGGCTCCCCTGGCTCTGGGAAAAGCTCGGCTCCTCC
TTCTGATGCGGAGCAACACGCCCCGCCTTCACTCGGCCAGAGCAGTGGTG
ATATGGACGAAGCGGGAGCCCCCGGGCGAGACCCGGCGGGGGATCGACGC
CGGAACCAACGAACCCCTCCAGGCGAGGGTGTGGAGAAGGACGCGGCTCA
CTTCAAGATGGTGGCCGACCGCTTCAGAGCCCTTATGGAGCGGCGCGAGC
GAAAGCTCGAGGAGGCCATGAGCGATCCCCAGACGAGGAGGGACCTAGAA
GTAATGTTTCCGGGCGTGATCACGGGGGACTACGTCACGCTGCTCGCGGG
CGTAAGGGGCATGGAGGAGGAGGACTTCCAGGACCTCCTGGACGCTGCGA
GGAAGCGCCGCAGAGAGATGGACTCCTCCGCTAGCGGAGGTAGAGACAGG
GAAGGCAACACCTCCTCCCCCTCTTCCTCCGAGCACACACACCCGGCTGC
GGCGGCCGCCGACGACTCCAAGCCCTCGAGCGCTAAGATGGGCTCCCCGC
CGGCGGGGGGCTGTTCCGGCGCAGCGAGGGCAGGCTCCCCTGGCTCTGGG
AAAAGCTCGGCTCCTCCTTCTGATGCGGAGCAACACGCCCCGCCTTCACT
CGGCCAGAGCAGTGGTGATATGGACGAAGCGGGAGCCCCCGGGCGAGACC
CGGCGGGGGATCGACGCCGGAACCAACGAACCCCTCCAGGCGAGGGTGTG
GAGAAGGACGCGGCTCACTTCAAGATGGTGGCCGACCGCTTCAGAGCCCT
TATGGAGCGGCGCGAGCGAAAGCTCGAGGAGGCCATGAGCGATCCCCAGA
CGAGGAGGGACCTAGAAGTAATGTTTCCGGGCGTGATCACGGGGGACTAC
GTCACGCTGCTCGCGGGCGTAAGGGGCATGGAGGAGGAGGACTTCCAGGA
CCTCCTGGACGCTGCGAGGAAGCGCCGCAGAGAGGAAGAGCTCGGAGCGG
AGAACGGCCACGAAGGAAGCCGCAAGGTACCCAAAACCGCAGCAGTCTCG
TCCCCGTCTTCGGCGCCACCCCGCCGGTCCTCCAACAGCTCCTCCGGGGG
GGGGGCGCCTCCGCCGCCAGCGAGTTGGGAAGGGGGCGACGGGCGGCGTG
GCCAATACTACGCCCAGCCGCCGCCACCGGAAGAGCTCGGAGCGGAGAAC
GGCCACGAAGGAAGCCGCAAGGTACCCAAAACCGCAGCAGTCTCGTCCCC
GTCTTCGGCGCCACCCCGCCGGTCCTCCAACAGCTCCTCCGGGGGGGGGG
CGCCTCCGCCGCCAGCGAGTTGGGAAGGGGGCGACGGGCGGCGTGGCCAA
TACTACGCCCAGCCGCCGCCACCG
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