mRNA_L-elsbetiae_contig5558.13866.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5558.13866.1
Unique NamemRNA_L-elsbetiae_contig5558.13866.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5558.13866.1 vs. uniprot
Match: D8LBB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB3_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.710e-27
Identity = 96/226 (42.48%), Postives = 113/226 (50.00%), Query Frame = 2 
Query:  635 SGTDQSSTVSTDSEDDHGDPREDIRGKMASDIMEGGVSSRSGDA----------------------------------------------HEGMKPQATAAAANSTSGSWRNVRRNSWET--------GRGE--DIGT----GGGSAGLGRY---EGEPLLREEVADYIGGVDFRDGTGPSALLPNDVARAFRDAEDFALLGRGQELWSRLTGDDRGRDQHHPRAG 1123
            SG D +S  STDSED+  +PRE    +M SD  +G V S    A                                               E ++PQA A+AA    G  R+V+  SWET        G G+  D GT    G G  G+G     E EPLLREEVADY+G +DFRDGTGPSAL PN+V RAFRDA++ ALLGRG E WSRLTGD  GRDQ H   G
Sbjct:   15 SGADPASPFSTDSEDNQREPRERFGDRMTSDSTDGEVRSTLSAADGQRNRRRDERGRTSPSLLQLARQRSMQKVPGTPGSTSGRNSPTNIREEVEPQAEASAA--AVGGRRSVK--SWETPHNVGQGMGSGDNGDDGTLFRRGSGGFGIGEAQFDEEEPLLREEVADYVGSIDFRDGTGPSALPPNEVVRAFRDADEIALLGRGGEFWSRLTGDGHGRDQRHHSVG 236
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5558.13866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBB3_ECTSI1.710e-2742.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5558contigL-elsbetiae_contig5558:1337..4332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004550.1
Exons4
Model size1124
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5558.13866.1prot_L-elsbetiae_contig5558.13866.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5558 3647..4332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.9650965-UTR-L-elsbetiae_contig5558:1336..19631622816586.9650965-UTR-L-elsbetiae_contig5558:1336..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 1337..1963 +
1691683666.3297079-UTR-L-elsbetiae_contig5558:1336..19631691683666.3297079-UTR-L-elsbetiae_contig5558:1336..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 1337..1963 +
1622816586.9776614-UTR-L-elsbetiae_contig5558:3349..34301622816586.9776614-UTR-L-elsbetiae_contig5558:3349..3430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 3350..3430 +
1691683666.3442743-UTR-L-elsbetiae_contig5558:3349..34301691683666.3442743-UTR-L-elsbetiae_contig5558:3349..3430Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 3350..3430 +
1622816586.992962-UTR-L-elsbetiae_contig5558:3639..36461622816586.992962-UTR-L-elsbetiae_contig5558:3639..3646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 3640..3646 +
1691683666.353422-UTR-L-elsbetiae_contig5558:3639..36461691683666.353422-UTR-L-elsbetiae_contig5558:3639..3646Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5558 3640..3646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816587.0075493-CDS-L-elsbetiae_contig5558:3646..38681622816587.0075493-CDS-L-elsbetiae_contig5558:3646..3868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5558 3647..3868 +
1691683666.3620036-CDS-L-elsbetiae_contig5558:3646..38681691683666.3620036-CDS-L-elsbetiae_contig5558:3646..3868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5558 3647..3868 +
1622816587.023363-CDS-L-elsbetiae_contig5558:4146..43321622816587.023363-CDS-L-elsbetiae_contig5558:4146..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5558 4147..4332 +
1691683666.3722446-CDS-L-elsbetiae_contig5558:4146..43321691683666.3722446-CDS-L-elsbetiae_contig5558:4146..4332Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5558 4147..4332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5558.13866.1

>prot_L-elsbetiae_contig5558.13866.1 ID=prot_L-elsbetiae_contig5558.13866.1|Name=mRNA_L-elsbetiae_contig5558.13866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MASDIMEGGVSSRSGDAHEGMKPQATAAAANSTSGSWRNVRRNSWETGRG
EDIGTGGGSAGLGRYEGEPLLREEVADYIGGVDFRDGTGPSALLPNDVAR
AFRDAEDFALLGRGQELWSRLTGDDRGRDQHHPRAG
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mRNA from alignment at L-elsbetiae_contig5558:1337..4332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5558.13866.1 ID=mRNA_L-elsbetiae_contig5558.13866.1|Name=mRNA_L-elsbetiae_contig5558.13866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2996bp|location=Sequence derived from alignment at L-elsbetiae_contig5558:1337..4332+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGGCGTTGAGCTTTGGAGCGCCGATGAGGACTACGCGTACCTTGCCGC
CGAGCGCTTGGCAGAGTCCGTGGCGCGAGAATAGTAGGAACTCGGAATCT
TTGCTTTTCTTTCGGGATTATTCAATAAACGCTTTGGTGTAATTGTGCGT
GAGGCTGGCTAAATAGCCGAAGGAAAGGATCTCGCTTGTGAAACAGGCGA
CTGGTACCACGGAGCCTGGATTTTTCTTGGCGTTGTTGCTGTCGCCGTTT
TTCATGTGCAGTTGTTGTTGCTGTTTCCGTCTCCCTAATGGGTGCTGCTC
GCGGTGCCGGCGAGGACAGAACTGCCGCTGCGACAAAGGCCACCTTATTG
AGTTAGGAGGGGTATCATGCGGCAACAGTCTACAGGGGTGCTGATGTAGA
AATAGACGCTCGGCTCGCTTGTTGTTGGCTGACTACTAGCTACGACGTAG
AGACGCATGTTGTGCTCTCTGCTGACAGGCAAGAGGGAAAGGGAAGACGA
CGCTGAAAGACCGAGAGGCAACGAGATAAGGACATGGCGTATTGTAGGCA
AAAAAGAAGACACAAGGACAGGGGCCAAAAATAGAGAGACAAGGGGATCC
AAGGAGGGCGAACGCGGGCAGACGAAGGTAGGAAAGACGGAGACGATATC
AATCGACCAACGAATCTCGCAACGCACTTTGCCCCGAACGCCCTCGCCGC
CTCAGCCGCGGTTTCGGTTTCTGTTTCTTCCCGCCTTCCCTTCCTCGTTT
CTCTTTCTCTTCGGCCTAAATAACAGACGTCGCGCCCTCCGCCTCTTTTT
TTAAGAAAAACAGATAATCAAAAATGGAACCTAACCCACACTGGAGATGG
CGTTTCGCGGAGGTTTTGCTCTCTAGTCTATGTATGTATCTACGCAGTCC
GCGCCACAACTTCCTCGATCTTGCACAGTACAGGATCACTCATTTAGTCC
TGATCCTCGGCGCTCACTCCACTTCCTCCCCTCCTTTAGTGCCTGTGTAC
GGGGTGTGATCTTCTGCCACCTGCAGCAAGTATCAAGGTAGGGGCGGGGC
GTTTGTACCAGCAGAAAAGGGAGAGAGAGTACGGGAGTACCGTTCACTCG
CGTTCACAGGAAAAACAACTTGAAACCGTCATTTCTGCCATTCCCGGGGG
CACACCGATTGATTGTGATTGGTCAACAGGGATGGATGCCGGCATGGCGG
GCGCGCGCGCGCGCGGCAAGAGAGAGACAGAAAGACAGATGCACTCCTAG
AGAAGCATAGTAATATCTGCTTTGCTGCTGTCGATATTGTAGTGCAACGG
CTGCTGAAGACTTCGACGGATGCCAGAGGGTTGAGACCGTCGGTCCCTTT
GCGCAGAGGTACACCCATGGCGAGGGATAGAAAAGTCTGGATCATAAATT
GCCGCAGAGCGAGTTCGGACTAGACTACACCAGTCACTGGTAGATTCTAC
ATAATCTGCAGCTTTCACGTCTTCTGTACCTTGATCTAGATGTCTACATA
TCGATAATCTAGCATGCGGCAGATACGCCCATCAGATACGCAAGGAACTT
TCTGAGAAAGCCGTTACATAGTTTTAGGATCTCCGGTTTTGTGTGCGCCC
AGCCGGCACGCTCTTCTCCCCACACTGGCCACACCCCCCAGACCTTCTTC
CAAGACCATTTCTTTTATTTTCCGTCTCTACACTTCAAGCGGACCATGAG
GAGACTGCTCAATAGGTGTGATAGTGCAGGTTGCCTTGTTGTTGGGTACA
AACACCTCTCACCATTTGTCACCAATCAAGACGAACCCGGGGAGATACAG
ACCCGAGATCCGGATATGTATCTCGTCGTCCTACGAATGCACAGCAATAC
ATATATCTAGTACAAGCATTTTCGTACATACGTGTGTGCCCAAGGCCATA
GACTCTAATCTAGGGAGCATGGTTTGAATAGATACCTGCACGCTGATAAG
AACAGCGCTTCCCGACTGCTGTGCTTCATACGTGTACCGGCCCTGTTTCT
GTACCTTACGCAGGCAAGCAAGCGGAACTGACCAGTCCAGCACAGTATCC
ACCGACTCGGAGGATGACCACGGAGATCCCAGAGAAGACATCAGGTCAAC
ATTTAGACACAGCAGTGCTATGTATGTAAAGCACCTACCTATCTACTTGT
AGCTGCTGCACGCACGTGAGCTGAAAGATAAGCGCCGATGTATGCAGTAG
AGATCATGTGAACATCGCAATCACCGCCTCAGCTGTCAGTCATGCAGGTT
TCCCCGCCGTATTCAAACCGATATCAACATCGTGTTGTTGTACACTTATC
TAGGGGGAAGATGGCCTCTGATATTATGGAGGGGGGGGTAAGCTCGAGGT
CTGGCGATGCCCACGAGGGTATGAAGCCACAGGCAACGGCGGCTGCAGCC
AATAGCACTTCTGGCTCCTGGAGGAATGTCCGCAGAAACTCATGGGAGAC
AGGCAGGGGAGAGGACATCGGCACGGGCGGAGGAAGCGCTGGCCTCGGCC
GGTATGAGGGAGAACCACTACTTCGCGAAGAGGTAAGGACTTCCACAGGT
TAAAATGCCCAATACCAAGTTCAGGTGGATTGAACTGAACTGTTGTTCCT
GTAATACTGTGCGTTCACGTTCTCACGGTCTTACACTAGGTTCTTGCGCA
CGGGCACTCATTCATGACCATCCTACATACCGGTAGACAGATAGATTCTA
GGAAAAACAAAAAGCGAGCGTTTGATGTAGACTCCAGAGTAGGCGGATAC
AAGCGGCACCTCACTATTCTCGATCTATCAATCTGCGAACGCTGTGCCAA
CCGTGTTAAGGTGGCGGATTACATCGGCGGTGTCGATTTTCGAGACGGCA
CCGGCCCCAGCGCCCTTCTTCCCAACGATGTCGCCCGAGCGTTTCGGGAC
GCGGAAGACTTTGCACTTTTGGGCAGAGGCCAGGAGTTGTGGTCGCGACT
CACGGGTGATGACCGTGGTAGAGATCAGCACCATCCAAGGGCAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5558:1337..4332+

>mRNA_L-elsbetiae_contig5558.13866.1 ID=mRNA_L-elsbetiae_contig5558.13866.1|Name=mRNA_L-elsbetiae_contig5558.13866.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig5558:1337..4332+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCTCTGATATTATGGAGGGGGGGGTAAGCTCGAGGTCTGGCGATGC
CCACGAGGGTATGAAGCCACAGGCAACGGCGGCTGCAGCCAATAGCACTT
CTGGCTCCTGGAGGAATGTCCGCAGAAACTCATGGGAGACAGGCAGGGGA
GAGGACATCGGCACGGGCGGAGGAAGCGCTGGCCTCGGCCGGTATGAGGG
AGAACCACTACTTCGCGAAGAGATGGCCTCTGATATTATGGAGGGGGGGG
TAAGCTCGAGGTCTGGCGATGCCCACGAGGGTATGAAGCCACAGGCAACG
GCGGCTGCAGCCAATAGCACTTCTGGCTCCTGGAGGAATGTCCGCAGAAA
CTCATGGGAGACAGGCAGGGGAGAGGACATCGGCACGGGCGGAGGAAGCG
CTGGCCTCGGCCGGTATGAGGGAGAACCACTACTTCGCGAAGAGGTGGCG
GATTACATCGGCGGTGTCGATTTTCGAGACGGCACCGGCCCCAGCGCCCT
TCTTCCCAACGATGTCGCCCGAGCGTTTCGGGACGCGGAAGACTTTGCAC
TTTTGGGCAGAGGCCAGGAGTTGTGGTCGCGACTCACGGGTGATGACCGT
GGTAGAGATCAGCACCATCCAAGGGCAGGAGTGGCGGATTACATCGGCGG
TGTCGATTTTCGAGACGGCACCGGCCCCAGCGCCCTTCTTCCCAACGATG
TCGCCCGAGCGTTTCGGGACGCGGAAGACTTTGCACTTTTGGGCAGAGGC
CAGGAGTTGTGGTCGCGACTCACGGGTGATGACCGTGGTAGAGATCAGCA
CCATCCAAGGGCAGGA
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