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Homology
BLAST of mRNA_L-elsbetiae_contig5552.13858.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI) HSP 1 Score: 281 bits (719), Expect = 1.020e-86 Identity = 143/167 (85.63%), Postives = 152/167 (91.02%), Query Frame = 3
Query: 828 GYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLDAFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQIERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVDFDDNDGYDDGYDSDPG-IAGAESDGMY 1325
GYVTE YDDFPDY+PNMGAWGESKPG TPEA PAD LDLDAFWNGGAEAVDFHDIPV DRP +VEMKQFID+EGLTMLPSETELLERDIQ ER+ARAKARKERFADEPDEDLVDD L+D+PL E+EVGVIDVPPPPVDFDD+DGYDDGYD D G + GAESDGMY
Sbjct: 9 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDD-EIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174
BLAST of mRNA_L-elsbetiae_contig5552.13858.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE) HSP 1 Score: 276 bits (706), Expect = 6.810e-84 Identity = 142/167 (85.03%), Postives = 151/167 (90.42%), Query Frame = 3
Query: 828 GYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLDAFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQIERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVDFDDNDGYDDGYDSDPGIAG-AESDGMY 1325
GYVTE YDDFPDY+PNMGAWGESKPG+TPEA PAD LDLD FWNGGAEAVDFHDIPV DRP +VEMKQFID+EGLTMLPSETELLERDIQ ER+ARAKARKERFADEPDEDLVDD L+D+PL E+EVGVIDVPPPPVDFDD+DGYDDGYD D G G AESDGMY
Sbjct: 71 GYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDD-EIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-01_007610.1 |
Exons | 4 |
Model size | 2409 |
Cds size | 531 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816586.306063-UTR-L-elsbetiae_contig5552:2..799 | 1622816586.306063-UTR-L-elsbetiae_contig5552:2..799 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5552 3..799 + |
1691683665.9004781-UTR-L-elsbetiae_contig5552:2..799 | 1691683665.9004781-UTR-L-elsbetiae_contig5552:2..799 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5552 3..799 + |
1622816586.365225-UTR-L-elsbetiae_contig5552:4326..5407 | 1622816586.365225-UTR-L-elsbetiae_contig5552:4326..5407 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5552 4327..5407 + |
1691683665.9504507-UTR-L-elsbetiae_contig5552:4326..5407 | 1691683665.9504507-UTR-L-elsbetiae_contig5552:4326..5407 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig5552 4327..5407 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816586.3195195-CDS-L-elsbetiae_contig5552:799..917 | 1622816586.3195195-CDS-L-elsbetiae_contig5552:799..917 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 800..917 + |
1691683665.910115-CDS-L-elsbetiae_contig5552:799..917 | 1691683665.910115-CDS-L-elsbetiae_contig5552:799..917 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 800..917 + |
1622816586.330102-CDS-L-elsbetiae_contig5552:2358..2490 | 1622816586.330102-CDS-L-elsbetiae_contig5552:2358..2490 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 2359..2490 + |
1691683665.9213722-CDS-L-elsbetiae_contig5552:2358..2490 | 1691683665.9213722-CDS-L-elsbetiae_contig5552:2358..2490 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 2359..2490 + |
1622816586.3399353-CDS-L-elsbetiae_contig5552:2961..3065 | 1622816586.3399353-CDS-L-elsbetiae_contig5552:2961..3065 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 2962..3065 + |
1691683665.9306228-CDS-L-elsbetiae_contig5552:2961..3065 | 1691683665.9306228-CDS-L-elsbetiae_contig5552:2961..3065 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 2962..3065 + |
1622816586.3554344-CDS-L-elsbetiae_contig5552:4149..4326 | 1622816586.3554344-CDS-L-elsbetiae_contig5552:4149..4326 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 4150..4326 + |
1691683665.9398308-CDS-L-elsbetiae_contig5552:4149..4326 | 1691683665.9398308-CDS-L-elsbetiae_contig5552:4149..4326 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5552 4150..4326 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5552.13858.1 >prot_L-elsbetiae_contig5552.13858.1 ID=prot_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MCTYNRRPRWGYVTEEYDDFPDYIPNMGAWGESKPGATPEASPADMLDLD AFWNGGAEAVDFHDIPVDDRPCYVEMKQFIDDEGLTMLPSETELLERDIQ IERKARAKARKERFADEPDEDLVDDALEDVPLGTLEVEVGVIDVPPPPVD FDDNDGYDDGYDSDPGIAGAESDGMY* back to topmRNA from alignment at L-elsbetiae_contig5552:3..5407+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5552.13858.1 ID=mRNA_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5405bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:3..5407+ (Laminarionema elsbetiae ELsaHSoW15) TTATAAACACAGCAAGTTGTCGAAATGCCCGATAATTTTCAAAAAATGGC
GCACCATCTCCTTGGCCAGTAGGCTAAGAGATATGTCGAAGGGCATCCCA
AAAGAGTGCCATAGCCGGAGGGCAGGCTTCAAACAGGTAAGGGCATCCCA
AAAGAGTGCCATAGCCGGGGGGCAGGCTTCAAACAGATCCTTGTGCTTCG
AGTGGCGGTGTGACAAAAGAGCACTTTTGAACTGCTGTACAAATGCGGCC
TAACTTGGACCTCAGCCTATGGCGGCGGGTGCCATGACAGGTACGCCCAA
CCAGAGGCTACGACGAGACACAGGTGTACTTGGATAGTACCTTAGAGCAA
TCTCTGGCGTTCTCAGCAGCAGCCCCGTTTTGAAATGGCAGTGACGTTTG
CCATGTCGACAGCTCTACAGCGGTTGATTAAGGTTTGATACAAGGAACGG
AGGGCAGCAAAGGCTCTACAGCACCGCTAAAGAAACGAAGGCCACGCGAT
GGTAGCTGTTGTCCTTGGCTTTCGATAAATATGTTGACCTAGAGGCTAAG
GAGAATGTGCGGCATTCTAAATTGCGATGGCGCTTAGTGCAAAATTGAAA
AGAGGCCAAAAACACAGTTGCGCCGCAAGTAACCGACGGTTTTTTGTGAG
TTCAGCCGACAACCTGCTGACCACGTCAGCTTTGGCCGGGTGCCGACCAC
AAAACACAACATGCCTCTTCGCCTTTTCTGGGGTTTGGCCTTTTCCCCTT
CAGCCACGTGATCGTGGCCAGCCTTAACTCGTTCTGTTTGTATATACATG
TGTACTTACAATCGGCGTCCCAGATGGGGGTACGTGACTGAGGAGTACGA
CGACTTCCCAGACTACATCCCGAACATGGGTGCTTGGGGGGAATCCAAGC
CGGGGGCTACCCCAGGTAAGCGAGAGAGAGGGGGGGGAGCCCGTCGTGTA
CAGCGAGGTGACGGGATGTCATGCGGAGGGAGAGATCCCCTGGTGTTTCT
ACCCCACAAGTGCAGACTCGGAGAGAGGTCTCGACGATTTCTGGAACGGG
GGAGAGGAGAAAATAAAGACAAGAGGTGTGTCAGCCGTCACAGCTGCCTC
GAAACAAAAGCAACTCTTCTTCCCGAATATATACAAGCTGGTTCATATTG
AATGCCCAAAATTTATTCCCCGGTGTTTTCTCACGCCGTTTTTTCGAGTT
AGACCATGAAATTTTGCACACATGATCAGTAAGGCATTATCAAACTCTCC
AGGAAGGGGCTTTTTTGATTTCGGGTTTTGTTGTCGAGATAGCCAGGATT
TCCCCCCCCCCCCGGTCAAATAGATCGACCGCGACCATGGATAAAGAGGC
AGCAAAATTAAAAATTAAAAAAGCCCCCTGATCCGTCTTTTTATCATCAC
CCGTTGTACATGTGTGCAAAATTTCAAGGTTTAACTCGTGAAAACGGCGT
GAGAAAACGCCAAAACGTGCTCGGAAGTGTAAAAACGTCTGCATACCCCC
CTAATTACTTGATTAAAGTATACTTTGGATATTTTTCACGTTTTTTTCAC
GGCAAACGACCATGCGGCGTCAGTCTTTTGAGTTATCCAACCAAACTTGG
TACGAATGTTCTTTGGGGGACGGCGGAGCGCGTGGAGGTTTTTGTTTTGC
GCAGAGGGTTCTGTACTGGCTATCGGGGGTCCTGAGGCCGGCGGGACCCC
CGAAAGCCAGTACAGACCCACCCACCCACCGGAACACCCCGGAATATTTT
TTTTCATATTTGCAGCATCAATATCCATCACGATGTCAAGTTTGAAATTG
GTTGAATCTTTTTTCGGGGAGATATGCAAGAAACCGTTGGCGCCGGCTCT
ACGGTCTTAGTCCTATATCACCAGGAAAAATTGACGTCGTCGTAACCGAA
ATATCATATTTTTGGGTATAACTCGATGCCAGGACAACCGTTTTCAAAAC
AGTTTTTTTGGTTAGATTCCCTAGAGGATCGCAATTGCCATGATACAAAA
AGTGTGGAGATTGAACGGCGTATTGGGTCGAAAATTCGTATTTTTAGTAC
TAGACAGTTTGGAGGCCGCTGATTGGCCGAGACTACCTTTCCGCCTATAG
CTTCGCACCCAAGCCCAAAATTCGCAAAAGGAACATGTCACCTTGTTGAG
TCGCTCGTAGGCAACACTACGATACCGATTTCATCAAAATTGAGCCTGTA
TTGCGTTCGTTATTAGTCGGGGAATGAATTTTGGGTGTTCTTCTGAACCA
GCTTGTAGACTACTTTTTTTGTTGTAACACCTACATACTTATACTAAATA
CATATGGTACCATATGTTGCACGTTGCCTGATCACGTGTTCGGCCTGACT
GACCAGAGGCGTCCCCGGCGGACATGTTGGATCTGGATGCTTTCTGGAAC
GGAGGGGCGGAGGCGGTGGACTTTCACGACATTCCGGTTGACGACCGCCC
TTGCTACGTGGAGATGAAGCAGTTCATTGACGACGAAGGTCGGTTTTTAC
ATTCTTACCCGTGGTTTTGGCGAGAAATCGATTTATGGCGTACTTATGCC
GGGCGCGTTGGCGGGGAGGGGGGGGGGCAGCAAACGGCGTTTTGTCTCTG
TAGCCTATCGTAGAGCCCACGCGCTTGCTGCGATGATCGCAAAAGCCAAT
CGAAAATCCGCCGATTCCAATCCAGGCGCGTCTTTATTTACGTGTAGTGC
GCTTGTGTATGTGGAGGACAACAGTAGTACGCTGTAAAACGTATCGGCTT
GACGAAAAACGGTCCATTGCGCTGTTTCTTAAGCTCAGACATCACCGTGG
GAAGAAAACAGTGCGTGCGCTTTTTTGTGAAACTGGCAAAGTAATCTCCA
GTCAAGCTACAGTGAAAGATTCTACACGTTTGAGAAGTATTTCTATGTAG
TATGTATGAGCTGTTTCGTTCGCTTGCTTAATCGCCAATCTTCCTGTCTT
ACCTAAAAGGGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGG
GATATCCAGATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTT
TGCGGACGAGCCGGTACGTGCGCGCGCGCGGGGGGGGGGGGGGGGGGGGG
AGTTTGAAATAGGGGCCGCAGGGAGGATGGGGGGGGAATTAGGCATTACT
ACCCCCGCCACGAAACNNNNNNNNNNAAGAGGAGGAAGAGGGGGGGGGGG
GGGAGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGTCGATTGTTGAAATATGGGCCACAGG
CAGTATGGTGGGATATGTAGACATTCCTGACCCCTCCAGGCACCGCAGGG
CACGCCAGACGTGCCCCCCCCCCCCCATTTTTTTGTTTTCCTGCATTGTC
GCCGCCGCCGCCGCCGCCGCTGCTGCTGTTGCTGTTGTGTGTGTTGTAAA
CCGTGGGCTTTGTCGTTGAGTGTTTTCATGGTCTTGAACCCCAGAAAGCG
CCGTTGGTGTGGTATGTAGGTATACAGACACTGGCTGTGAGGCGCCAGCC
CTGTGAGGCCGATGTGATCACTCTCAAGGCGTCTTGCAAAATACGCTTTT
TAGTCCTTAAGTCGGGCCACCCTACTGCGTAGTTTTTGCGCTCTGCATAA
AGATAGATTCGCCTGCTAGATCTATGCAGCTACAAAAGCGCCATTTCGAT
TCCATTTCTCTACTGTACATGCTTCGAAAAGTTGGAGAGGTGCTGCGATC
GGTTATTCATTTCGTAGCTTAACGACCGGGGTTTATATTTCGAGCTGGTT
TCTTCTTCGTGTGTTAACACCCTTCTCTTCAGTTCTGCATCCTTCTTCTA
CCCGAAAATTTAGCATGCATGTGTGGCGCTCTTGACATCGCTTGTCACAA
ATACACTTTTCTGATCGAAATAAACCCCCAACAATACAAGTAGTACACCG
CCTCATTGTTTCCTTACTATGCATTTTTTTTTGCATCGCCCCTGCCCGTT
TTTCCTGCGGCTCTCCTGCACGGCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCTGTACGTGCGTGCTCGCGTGTCGGCGCGAATCGGCTCCGATAAACAA
TTCGGTGAAAAATAACCATGTACATGGTAATATTTATATCGGCACAGGAT
GAGGATCTTGTGGACGACGCCTTGGAGGACGTGCCGCTCGGCACGCTGGA
GGTTGAGGTGGGCGTGATCGACGTCCCGCCGCCGCCCGTGGACTTCGACG
ACAACGACGGCTACGACGACGGTTACGACTCGGACCCGGGCATTGCAGGG
GCGGAAAGCGACGGGATGTACTAAACTCGGGCCCTGGCATTGCACGGGCA
AAAGCGAAGGCAGAAAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATT
GTAGGAGAAGACAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATCGCA
GGGGCAGACAGCGAAGGGATGTGCTTAACTGGGACCCGGGCAAAAGCGAA
GGCAGAAAGCGAAGGGGTGTGCTAAACTCGGACCCGTGCATTGCAGGGGC
AGACAGCGAAGGGGTGTGCTAAACTCGGACCCGGGCATTGCAGGGGAAGA
CAGCGAAGGGAGGTGTGCTAAACTGGGACCCGGGCATTGCAGGGGAAGAC
AGCGAAGGGAGGTGTGCTAAACTCGGACCCGGGCATTGCAGGGGCAGACA
GCGAAGGGGTGTGCTAAACTCGGACCCGGGCGTTGCAGGGGAAGACAGCG
AAGGGGTGTGCTTAACTGGGACCCGGGCATTGCAGGGGCAAACAGCGAAG
GGGTGTGCTAAATAAACCCCCTTTCTCTTGTTTTGGAAGAGAGGCCGGTT
TGGTTGGCGGGTGGTTGTTGCTCGGTCTTTGAATCCGAGACCTGCGGATC
CGCCATGGGGCTTGCTTGGTCGGTTACGAAACGAGCGGCAGTGTATCTGG
GCGAGGTCGGGCAATGGTTCTAGCTATTGCAGCTCCCTCTCGCACGTGAG
AGGCCTCTGGTTTCGGTTGCCAGTAAATAGCTGCAACAACAGCGCGTTGT
CTGTCGGCGATGCGGTGAGAACCATTTGTTTAGCAGACCCGCGACGGCGG
CGGCAGCAGAATCGGAGAAAAATTGTCGGGCATTGCGGTGATTTGTAAAC
ATGAACGCGATTGGGGTGACCAGCCGCCAGTGTCAAAATTCCTTGCAGCC
TCCCTTTGAAGATCTACCGGTCCGATCTCCGCCGGCGGGGGGGGGGCATT
TGCCCCATCATTCACCGCGCTCGGCGAACGTTGGCTGTCGCGGTACCTGG
TTGACTCTTGTGACCCTTTTTCGAAATCGGATTTGGGCTTGACGTCAACG
TGGAGTTAGCTGTACCACACTGTGTGCCTTTAACTGCTTTTGGCCGTTTT
GTCTC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5552:3..5407+ >mRNA_L-elsbetiae_contig5552.13858.1 ID=mRNA_L-elsbetiae_contig5552.13858.1|Name=mRNA_L-elsbetiae_contig5552.13858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig5552:3..5407+ (Laminarionema elsbetiae ELsaHSoW15) ATGTGTACTTACAATCGGCGTCCCAGATGGGGGTACGTGACTGAGGAGTA CGACGACTTCCCAGACTACATCCCGAACATGGGTGCTTGGGGGGAATCCA AGCCGGGGGCTACCCCAGATGTGTACTTACAATCGGCGTCCCAGATGGGG GTACGTGACTGAGGAGTACGACGACTTCCCAGACTACATCCCGAACATGG GTGCTTGGGGGGAATCCAAGCCGGGGGCTACCCCAGAGGCGTCCCCGGCG GACATGTTGGATCTGGATGCTTTCTGGAACGGAGGGGCGGAGGCGGTGGA CTTTCACGACATTCCGGTTGACGACCGCCCTTGCTACGTGGAGATGAAGC AGTTCATTGACGACGAAGAGGCGTCCCCGGCGGACATGTTGGATCTGGAT GCTTTCTGGAACGGAGGGGCGGAGGCGGTGGACTTTCACGACATTCCGGT TGACGACCGCCCTTGCTACGTGGAGATGAAGCAGTTCATTGACGACGAAG GGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGGGATATCCAG ATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTTTGCGGACGA GCCGGGCTTACGATGCTGCCGTCGGAGACGGAGCTGTTGGAGCGGGATAT CCAGATAGAGCGAAAAGCTCGGGCGAAGGCCAGAAAGGAACGCTTTGCGG ACGAGCCGGATGAGGATCTTGTGGACGACGCCTTGGAGGACGTGCCGCTC GGCACGCTGGAGGTTGAGGTGGGCGTGATCGACGTCCCGCCGCCGCCCGT GGACTTCGACGACAACGACGGCTACGACGACGGTTACGACTCGGACCCGG GCATTGCAGGGGCGGAAAGCGACGGGATGTACTAAGATGAGGATCTTGTG GACGACGCCTTGGAGGACGTGCCGCTCGGCACGCTGGAGGTTGAGGTGGG CGTGATCGACGTCCCGCCGCCGCCCGTGGACTTCGACGACAACGACGGCT ACGACGACGGTTACGACTCGGACCCGGGCATTGCAGGGGCGGAAAGCGAC GGGATGTACTAA back to top
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