mRNA_L-elsbetiae_contig555.13853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig555.13853.1
Unique NamemRNA_L-elsbetiae_contig555.13853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig555.13853.1 vs. uniprot
Match: A0A6H5JBS4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JBS4_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.210e-34
Identity = 63/84 (75.00%), Postives = 72/84 (85.71%), Query Frame = 2 
Query:   59 MDDLGRKNLRAWLQKSLASHPENDNGLVAYVEAIVGDAEGTDEDLREKWTEKLDDFLAESSGDFTNVLLSGVRSG-KFDSAWRG 307
            M+DLGRK L+ WLQKSL +HPENDNGL+AYVEAIVGDA+G D+DLREKWTEKLDDFLAESS DF  VLL GVR+G  F + W+G
Sbjct:    1 MNDLGRKKLKTWLQKSLGNHPENDNGLIAYVEAIVGDADGPDDDLREKWTEKLDDFLAESSADFAKVLLKGVRNGGNFGTVWKG 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig555.13853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBS4_9PHAE2.210e-3475.00RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig555contigL-elsbetiae_contig555:16540..17554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7.5e-31
Seed eggNOG ortholog2880.D7FLE2
Preferred nameRBM26
KEGG koko:K03234,ko:K11267,ko:K13192,ko:K13193
KEGG Pathwayko04152,ko04921,map04152,map04921
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0001672,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0008150,GO:0008589,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010648,GO:0010847,GO:0010921,GO:0010923,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031440,GO:0031441,GO:0031445,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032386,GO:0032388,GO:0032879,GO:0032991,GO:0033043,GO:0033044,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044087,GO:0044092,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045879,GO:0045934,GO:0045936,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050684,GO:0050686,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051050,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1900363,GO:1900364,GO:1901363,GO:1902275,GO:1902802,GO:1903311,GO:1903312,GO:1990477
EggNOG free text desc.mRNA processing
EggNOG OGsKOG2135@1,KOG2135@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03012,ko03019,ko03036,ko03041,ko04147
Exons2
Model size312
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig555.13853.1prot_L-elsbetiae_contig555.13853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig555 16540..17496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.0599868-CDS-L-elsbetiae_contig555:16539..166681622816586.0599868-CDS-L-elsbetiae_contig555:16539..16668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 16540..16668 -
1691683665.77139-CDS-L-elsbetiae_contig555:16539..166681691683665.77139-CDS-L-elsbetiae_contig555:16539..16668Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 16540..16668 -
1622816586.072286-CDS-L-elsbetiae_contig555:17373..174961622816586.072286-CDS-L-elsbetiae_contig555:17373..17496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 17374..17496 -
1691683665.7887523-CDS-L-elsbetiae_contig555:17373..174961691683665.7887523-CDS-L-elsbetiae_contig555:17373..17496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 17374..17496 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816586.0842977-UTR-L-elsbetiae_contig555:17496..175541622816586.0842977-UTR-L-elsbetiae_contig555:17496..17554Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig555 17497..17554 -
1691683665.7997515-UTR-L-elsbetiae_contig555:17496..175541691683665.7997515-UTR-L-elsbetiae_contig555:17496..17554Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig555 17497..17554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig555.13853.1

>prot_L-elsbetiae_contig555.13853.1 ID=prot_L-elsbetiae_contig555.13853.1|Name=mRNA_L-elsbetiae_contig555.13853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
MDDLGRKNLRAWLQKSLASHPENDNGLVAYVEAIVGDAEGTDEDLREKWT
EKLDDFLAESSGDFTNVLLSGVRSGKFDSAWRGG
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mRNA from alignment at L-elsbetiae_contig555:16540..17554-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig555.13853.1 ID=mRNA_L-elsbetiae_contig555.13853.1|Name=mRNA_L-elsbetiae_contig555.13853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1015bp|location=Sequence derived from alignment at L-elsbetiae_contig555:16540..17554- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGACGGGGGGGGCAACCTAGCCAGGCAAGGGTCAAGAAGCTGACAAA
GGGAGGCGATGGACGACCTTGGCAGGAAGAACTTGAGGGCTTGGCTTCAG
AAAAGTCTCGCCAGCCACCCTGAGAACGACAACGGGCTTGTCGCGTATGT
TGAGGCCATCGTCGGGGACGCCGAAGGAACGGTGCGTTATTTTGGGTGTG
GCCCTTCGATAGTTTGCATTTATTTTCAGCAGAGCGTCTTCGTTGTCTGC
GTAAGCACCTATCCAGTGGTGAGATTTGCTGTTCTCGCTTACCGAGAAAC
TATAGTCAGCACAGCAGTAGTGTGCAATGTCCTCTCCCACAAGACCTTGC
GCGACTGCCACCGCTGGGTCTCGGTAAGCGAGAACAGCAAATCTCACCCT
GCCTACCTACCTGTGTAGTTGTTGTCAACCATACGCGTATGCTTGCCTTA
TCAGCGGTGCCGTTTGCTTTCGATAAAGAATGCGACCGTGAATAACGATT
AAATAACAAAAGTTACAATACAAATGAGGAGGTACGGCTTTCACACCTAC
CCATGGTACCGTACTGTTTATGTTACACACGGATAAGATAAGTAGACTTT
GGGCGACGTCTGGCACAGGTACGTACGTTGAGGAGGTATTATGTACCACT
GCCTACTCTGTAGTACCGACCTCGCTCAAACAAGTTGTGAACAACCGAAA
GAAAAATAATTTGAACACATCCCCAAAATCCGTGCGCCTCTTTTAGCATC
TGAATTCGTTCGTAGACCTGTAGATACAAAAGTGTAGATTTCTCAGTTGC
ACCATCCGCTCAGAGGGTCTGACATCGAGTTCCCTTAGTGATTCCGTACG
CGCAATACCCTTTCTGTGGCTCCCAATACACATTAGGACGAGGATCTGCG
AGAGAAATGGACGGAAAAGCTTGATGATTTCCTTGCCGAGAGCAGCGGAG
ACTTCACCAACGTCCTACTCAGTGGCGTCCGTAGCGGAAAGTTTGACAGT
GCTTGGCGTGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig555:16540..17554-

>mRNA_L-elsbetiae_contig555.13853.1 ID=mRNA_L-elsbetiae_contig555.13853.1|Name=mRNA_L-elsbetiae_contig555.13853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig555:16540..17554- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGACCTTGGCAGGAAGAACTTGAGGGCTTGGCTTCAGAAAAGTCT
CGCCAGCCACCCTGAGAACGACAACGGGCTTGTCGCGTATGTTGAGGCCA
TCGTCGGGGACGCCGAAGGAACGATGGACGACCTTGGCAGGAAGAACTTG
AGGGCTTGGCTTCAGAAAAGTCTCGCCAGCCACCCTGAGAACGACAACGG
GCTTGTCGCGTATGTTGAGGCCATCGTCGGGGACGCCGAAGGAACGGACG
AGGATCTGCGAGAGAAATGGACGGAAAAGCTTGATGATTTCCTTGCCGAG
AGCAGCGGAGACTTCACCAACGTCCTACTCAGTGGCGTCCGTAGCGGAAA
GTTTGACAGTGCTTGGCGTGGCGGCGACGAGGATCTGCGAGAGAAATGGA
CGGAAAAGCTTGATGATTTCCTTGCCGAGAGCAGCGGAGACTTCACCAAC
GTCCTACTCAGTGGCGTCCGTAGCGGAAAGTTTGACAGTGCTTGGCGTGG
CGGC
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