mRNA_L-elsbetiae_contig555.13854.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig555.13854.1
Unique NamemRNA_L-elsbetiae_contig555.13854.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig555.13854.1 vs. uniprot
Match: D7FLE1_ECTSI (FoP_duplication domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE1_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.930e-42
Identity = 150/248 (60.48%), Postives = 162/248 (65.32%), Query Frame = 1 
Query:   28 LEAQRVVVKPVHNMGATQRRVDIDSRRKVGRQTQFDARRQGVGNAKPAMRAAQSRVVSPRQQ--PQXXXXXXXXXXXXXXXXXXXGGGRNQNQKPMAPRTNLQKTAGRGG-------AANGRGPGRGAXXXXXXXXXXXXXXXXXXXXXXXGGRGXXXXXXXXXXNDNKAAAKPVDLDEGLDEYWFKAGKGPDPKVASXXXXXXXXXXXXXEKTNGDAAAGDKMEDTDAPEAAAVAPVAPVADIDPEL 744
            +EA R +VKPV N G +QRR ++DSRRKVGRQ Q D+RRQGV NAKPAMRAAQS+VVSPRQQ  PQ                   GGGRNQ    M  R N                A++GRG G   XXXXXXXXXXXXXXXXXXXXXXX            XX       K  DLDEGLDEYWFKAGKGPDPKVASXXXXXXXXXXXX +KTNGDAAAGDKMEDTDAP   A   VAPVA +DP+L
Sbjct:    1 MEANRAIVKPVFNNGISQRRSEMDSRRKVGRQIQVDSRRQGVANAKPAMRAAQSKVVSPRQQTAPQRVQGRGRGRSTQA------GGGRNQRSGGMPVRNNXXXXXXXXXXXXXXXXASSGRGVGXXXXXXXXXXXXXXXXXXXXXXXXXX------------XXXXXXXXXKETDLDEGLDEYWFKAGKGPDPKVASXXXXXXXXXXXXTDKTNGDAAAGDKMEDTDAP---APVVVAPVAGVDPDL 227
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BLAST of mRNA_L-elsbetiae_contig555.13854.1 vs. uniprot
Match: A0A6H5JG09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG09_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.340e-20
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   28 LEAQRVVVKPVHNMGATQRRVDIDSRRKVGRQTQFDARRQGVGNAKPAMRAAQSRVVSPRQQ 213
            +EA RV+VKPV N G +QRR ++DSRRKVGRQ QFD+RRQGV NAKPAMRAAQS+VVSPRQQ
Sbjct:    1 MEANRVIVKPVFNNGISQRRGEMDSRRKVGRQVQFDSRRQGVANAKPAMRAAQSKVVSPRQQ 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig555.13854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLE1_ECTSI1.930e-4260.48FoP_duplication domain-containing protein n=1 Tax=... [more]
A0A6H5JG09_9PHAE4.340e-2077.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig555contigL-elsbetiae_contig555:17910..21313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue3.6e-36
Seed eggNOG ortholog2880.D7FLE1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.C-terminal duplication domain of Friend of PRMT1
EggNOG OGs2DYWH@1,2S6VS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionFriend of PRMT1 duplication
Ec32 orthologEc-12_007810.1
Exons5
Model size747
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig555.13854.1prot_L-elsbetiae_contig555.13854.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig555 17910..21313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816585.8345273-CDS-L-elsbetiae_contig555:17909..179671622816585.8345273-CDS-L-elsbetiae_contig555:17909..17967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 17910..17967 +
1691683665.5831618-CDS-L-elsbetiae_contig555:17909..179671691683665.5831618-CDS-L-elsbetiae_contig555:17909..17967Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 17910..17967 +
1622816585.84972-CDS-L-elsbetiae_contig555:18421..184981622816585.84972-CDS-L-elsbetiae_contig555:18421..18498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 18422..18498 +
1691683665.5978298-CDS-L-elsbetiae_contig555:18421..184981691683665.5978298-CDS-L-elsbetiae_contig555:18421..18498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 18422..18498 +
1622816585.8612597-CDS-L-elsbetiae_contig555:18826..189791622816585.8612597-CDS-L-elsbetiae_contig555:18826..18979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 18827..18979 +
1691683665.606776-CDS-L-elsbetiae_contig555:18826..189791691683665.606776-CDS-L-elsbetiae_contig555:18826..18979Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 18827..18979 +
1622816585.872783-CDS-L-elsbetiae_contig555:19259..195211622816585.872783-CDS-L-elsbetiae_contig555:19259..19521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 19260..19521 +
1691683665.6162317-CDS-L-elsbetiae_contig555:19259..195211691683665.6162317-CDS-L-elsbetiae_contig555:19259..19521Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 19260..19521 +
1622816585.8852036-CDS-L-elsbetiae_contig555:21116..213131622816585.8852036-CDS-L-elsbetiae_contig555:21116..21313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 21117..21313 +
1691683665.6258042-CDS-L-elsbetiae_contig555:21116..213131691683665.6258042-CDS-L-elsbetiae_contig555:21116..21313Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig555 21117..21313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig555.13854.1

>prot_L-elsbetiae_contig555.13854.1 ID=prot_L-elsbetiae_contig555.13854.1|Name=mRNA_L-elsbetiae_contig555.13854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MSLSARFEQLEAQRVVVKPVHNMGATQRRVDIDSRRKVGRQTQFDARRQG
VGNAKPAMRAAQSRVVSPRQQPQQQQQQPRTQGRGRGRSFQAGGGRNQNQ
KPMAPRTNLQKTAGRGGAANGRGPGRGAGRTGGRGAGRTGGRGNNTAGGR
GGGRGGRGAGRGGRGNDNKAAAKPVDLDEGLDEYWFKAGKGPDPKVASLD
RGLDSYWSKASEKTNGDAAAGDKMEDTDAPEAAAVAPVAPVADIDPEL*
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mRNA from alignment at L-elsbetiae_contig555:17910..21313+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig555.13854.1 ID=mRNA_L-elsbetiae_contig555.13854.1|Name=mRNA_L-elsbetiae_contig555.13854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3404bp|location=Sequence derived from alignment at L-elsbetiae_contig555:17910..21313+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTTTCTGCCAGATTCGAGCAACTGGAAGCGCAGCGTGTCGTTGT
GAAGCCAGGTGTGTGCCATTTAGCGCGAAATAGCGTCTTGGAATGAAAGG
AGAGAGACCGAGATGATTTTAGCGGCGATCCTCGTGTGTCTCTCGGTTTC
ACTTGCGTTCAACAATTTCTGCTGCGTTGCTGATTTTAGCACAGACTCAC
CTCCTACGGCGCTCGTTTCCCAATCTAGTCGCTGCCGCAGCTTTTCTGCT
GATAAAAATTACTTTGTCGGGCGTATTTACCGGCAATACATCGGGGTATT
ACCTAGATAAAGTAGGTTTAAAACCTATGCAAGGTTGTCGAGCTGGCCGG
GTTCGTTGCGTGTAGCGCCACTTCGCATTTCGCCCACTCCCCTAGCCGAT
GGCCTCGTTAGTGAGGGCGCCCGCCATGCGATTTTATTGTTTGTTGCTTG
TTCGATTATCTCGACACGAACCCTCTGGACACTTTTCCACTCGCCTTGTT
ATTGTCATGCAGTCCACAACATGGGGGCTACGCAGCGGCGGGTTGATATC
GACTCGCGCCGCAAGGTCGGCCGCCAAACCCAGTTCGATGTGAGTACTGC
ACCTTTGATAACAGCAGCTCCTATCTCAAGTAAACTCCTGCATCTTCTGC
ATGTCTTGTCATCTTTGTTTCTCTAAATTGACCGGCATCCCACGGGTTGA
TTCTCATAATGTAGATAACGCCGGATGCACCGTCCGTCGTTCCGTGAGAC
GTCGATTTTCTAAAGTTTGTTCTCCGCTGCTGATGGTACGTCGTTTTATT
TGTCTAAGTTCTGTTTGTGCGCTTGATGATGTATACAGCTGCTTGCGCAT
TTGTTTTCGAGCATAAGTGCGCGACTTAGCTAAAAAAATGCATTATTTCA
CTATCCAAACACATCAGGCACGCCGCCAGGGAGTGGGCAACGCCAAGCCC
GCTATGCGCGCGGCGCAGTCGCGGGTTGTATCTCCGAGGCAGCAACCGCA
GCAGCAGCAGCAGCAGCCGCGCACGCAGGGACGGGGACGGGGAAGAAGCT
TCCAGGCAGGCGGTGGCAGGGTAAGTCGGACGTCGGACGCGGGCGGCGTC
TTGGAATTTCTCATGTGTGTAGATATGTAGTCATGACCGTGGGCGGAAGC
CAAAAGACTGAAGATCTCAACCACTCTATTTAGAGAAACCCTCCTTTACC
TTGTCATTCGGCCGCACCGCTCGCCCGCTTGTCGCGGTTGTGTGTTATTT
CAATTTCAATCCAAAGCGGACTTCCCCATTTGCTTGCCACCCACCGTAAA
TTGAAACGACCTCCTACTTGGACGTCCCCCATCTCCACCTGCAGAACCAG
AACCAGAACCAGAAGCCTATGGCGCCCCGCACCAACCTTCAGAAGACGGC
AGGGCGCGGAGGAGCAGCCAACGGGCGGGGCCCTGGGCGTGGTGCCGGGC
GCACGGGGGGGCGCGGTGCTGGACGCACCGGGGGGCGCGGAAACAACACC
GCTGGCGGGCGCGGTGGTGGCCGCGGGGGACGCGGAGCGGGAAGGGGTGG
ACGCGGGAACGACAATAAGGCAGCAGCCAAGCCGGTGGACTTGGACGAAG
GCCTCGACGAATGTGAGCAAGCAGCCTAACCCTAACTCCACCACTCCCCT
CCGGAGAGAGGACGGGACAAACGAGCGAAGCGGGGCAGGCAGGCAGGCAC
CCGGCGCTGATGTGATGGCGCCGAGCACCCCATGCATTACCCGTTTCCTT
TTCGACGTGTGGACCAAAGGATGAAGGGAAGTCGAGGAAGAGAGACTCGT
CGGCGGAACGGATTTTTTTTCGCCCGCCGGGGGGGTTCTTTCAACTCTTC
CAACTCTTCCTCTTCGTGTTGGGTGGCCCAGTCTTCCCGAGGTGTGACTG
GACTGGCGCTCGCGGGCGTCGCCGGCTTGCCGGTGAAATCGCGTGTGACG
CCATCGCCATGGCATCGATCGCCACCAATCTAGTGTGGCACTGATGCGAT
GCGATGCCCGCTTAGGAGGACACGGGAAGACCGATGGCACTTCCATCATC
AGACACGGCTTTCCATCCATCCGTGGTTCTGCCCCTTGCGCGGTGCCACT
TCACGCGCGTCTCGTCTCGCCTCACCTCGATCCTCGCGGGAAGTGGCGAC
GGCGACGGCTGCTGTTGTTGCTGTTGGGGGTGACGGAGGGTTCGCCGCCC
GTCATGCCGTGCCGCTCATGTGGTCGAGTCGAGCCCGTAGCGGCTGTTTC
ACCGCGTATTGGTCTCACCTGTTGGTCGACATGAGTCGGGGGTTTTGCCA
CGAGTATGCAACTGCTACTGCTGTGTCGTCACCGCTCTCCTCGGCAGCAT
GTGGCGTGCCCGCCCCGTGTGAGCCTCAACGCGTGCGTGCGTGCGAGCAC
TACTACCGTTCCGAACATTGAAACGGTGGACGCGTACCCCTCTGAAATCG
AGAATGCTGCTTCTTCAGATGCGGCGGCCTCTTTGAGTTTGACAGCAGGG
TTTTTGGTTTCGCCCAATACCTCTTCCCCTACAAAAAGTGGGTGGGGTCG
ATCCATCACACCTTATATCAACGATATGATACGGACACTTGTGTCAAAAG
AAATAAATCAATCCACACCGAATTTCCAAGCGTCGTCTACGCCCTGAGGT
GGCTGCGGTGGAGTGAGGGCGAGCGTATCCGGGTCGCTTGTGTGTAGAGT
TCGTTGTGTTACCGTCACCACTCCTTCTGCCGCGAACAGCGGGGTGAATC
GGTGGGGGGCGTTCTTGGCTGGTCGACGCTGGAGGCTTGAAGATTGGTGT
TGGAGACATCCGTGTTGCGGCATGGCTATGGAGCGGGAAAGGAGTCTATC
GAAATCTTCTGCGCCACCCGCACACTCGGCCAAGCCCGCCTTGCTGGCGC
TGATGTTGTATTCGCCATACATGTTTGATTGGAGGGGTTTCACAGGCGGA
GGGAGTATATCTCGCTTCCATATCGGTCTTGCTTGTGTACCAGCTGAAAG
CAGCGACCCGTCATCACCTGTTGTCGGGTTACCTTAAAACATGAAATGGA
AGGCCCGCTGTGCCGTTTTTTTTATGCGTAGTTGGTTCTTCTGCTGGCTA
GTTCCAACAACCATGGGATGTTCTTCAGGCCTGCCTTTCTCACTCCACAC
GCCCTCCATCCCTCCGTCCTCTCGACTTTGCTCGCCCCTTGTACCATTTT
CTTACAGACTGGTTTAAGGCCGGGAAGGGTCCCGACCCGAAGGTGGCATC
GCTCGACAGGGGACTGGACAGCTACTGGAGCAAGGCCTCCGAAAAGACGA
ACGGCGATGCGGCGGCGGGTGACAAGATGGAGGATACCGACGCGCCGGAA
GCTGCAGCGGTGGCACCGGTGGCACCGGTTGCTGACATCGACCCTGAGCT
GTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig555:17910..21313+

>mRNA_L-elsbetiae_contig555.13854.1 ID=mRNA_L-elsbetiae_contig555.13854.1|Name=mRNA_L-elsbetiae_contig555.13854.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig555:17910..21313+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTTTCTGCCAGATTCGAGCAACTGGAAGCGCAGCGTGTCGTTGT
GAAGCCAGATGTCTCTTTCTGCCAGATTCGAGCAACTGGAAGCGCAGCGT
GTCGTTGTGAAGCCAGTCCACAACATGGGGGCTACGCAGCGGCGGGTTGA
TATCGACTCGCGCCGCAAGGTCGGCCGCCAAACCCAGTTCGATTCCACAA
CATGGGGGCTACGCAGCGGCGGGTTGATATCGACTCGCGCCGCAAGGTCG
GCCGCCAAACCCAGTTCGATGCACGCCGCCAGGGAGTGGGCAACGCCAAG
CCCGCTATGCGCGCGGCGCAGTCGCGGGTTGTATCTCCGAGGCAGCAACC
GCAGCAGCAGCAGCAGCAGCCGCGCACGCAGGGACGGGGACGGGGAAGAA
GCTTCCAGGCAGGCGGTGGCAGGGCACGCCGCCAGGGAGTGGGCAACGCC
AAGCCCGCTATGCGCGCGGCGCAGTCGCGGGTTGTATCTCCGAGGCAGCA
ACCGCAGCAGCAGCAGCAGCAGCCGCGCACGCAGGGACGGGGACGGGGAA
GAAGCTTCCAGGCAGGCGGTGGCAGGAACCAGAACCAGAAGCCTATGGCG
CCCCGCACCAACCTTCAGAAGACGGCAGGGCGCGGAGGAGCAGCCAACGG
GCGGGGCCCTGGGCGTGGTGCCGGGCGCACGGGGGGGCGCGGTGCTGGAC
GCACCGGGGGGCGCGGAAACAACACCGCTGGCGGGCGCGGTGGTGGCCGC
GGGGGACGCGGAGCGGGAAGGGGTGGACGCGGGAACGACAATAAGGCAGC
AGCCAAGCCGGTGGACTTGGACGAAGGCCTCGACGAATAACCAGAACCAG
AAGCCTATGGCGCCCCGCACCAACCTTCAGAAGACGGCAGGGCGCGGAGG
AGCAGCCAACGGGCGGGGCCCTGGGCGTGGTGCCGGGCGCACGGGGGGGC
GCGGTGCTGGACGCACCGGGGGGCGCGGAAACAACACCGCTGGCGGGCGC
GGTGGTGGCCGCGGGGGACGCGGAGCGGGAAGGGGTGGACGCGGGAACGA
CAATAAGGCAGCAGCCAAGCCGGTGGACTTGGACGAAGGCCTCGACGAAT
ACTGGTTTAAGGCCGGGAAGGGTCCCGACCCGAAGGTGGCATCGCTCGAC
AGGGGACTGGACAGCTACTGGAGCAAGGCCTCCGAAAAGACGAACGGCGA
TGCGGCGGCGGGTGACAAGATGGAGGATACCGACGCGCCGGAAGCTGCAG
CGGTGGCACCGGTGGCACCGGTTGCTGACATCGACCCTGAGCTGTGAACT
GGTTTAAGGCCGGGAAGGGTCCCGACCCGAAGGTGGCATCGCTCGACAGG
GGACTGGACAGCTACTGGAGCAAGGCCTCCGAAAAGACGAACGGCGATGC
GGCGGCGGGTGACAAGATGGAGGATACCGACGCGCCGGAAGCTGCAGCGG
TGGCACCGGTGGCACCGGTTGCTGACATCGACCCTGAGCTGTGA
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