mRNA_L-elsbetiae_contig5540.13840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5540.13840.1
Unique NamemRNA_L-elsbetiae_contig5540.13840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A6H5JAN0_9PHAE (NYD-SP28 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAN0_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.550e-29
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 1
Query:   43 FLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            FLQERE LLA NK E+DGLFEKR+EMEL+YMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQ   Q
Sbjct:  228 FLQEREGLLAANKAEVDGLFEKRREMELSYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQTLEQ 299          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A835Z4S9_9STRA (Sperm tail-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4S9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.200e-23
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 1
Query:   10 YEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            Y +ELEA+E  FL+ER A L+ NK E+D LF+KR+E ELAYME++ +RQ QYQAE+E LLTRDGEE+ KLK+KLETDIQ   Q
Sbjct:  192 YALELEAIEAAFLRERSAQLSANKAEVDALFDKRREGELAYMEARARRQAQYQAEVEELLTRDGEEYIKLKVKLETDIQTLEQ 274          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A418B885_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B885_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.870e-21
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            QEEYE+ELE +E+ FL+ER+ L++TNK EID LFEKR+EME+ +ME+KQ R E  Q EIE L  +D E++ KLKIKLETDIQ   Q
Sbjct:  170 QEEYELELEQIEDAFLKERDELISTNKSEIDSLFEKRREMEMTFMEAKQARDELSQKEIEDLRVKDAEDYNKLKIKLETDIQTLEQ 255          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A0P1AXG6_PLAHL (Dynein regulatory complex protein 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXG6_PLAHL)

HSP 1 Score: 87.8 bits (216), Expect = 2.350e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            QE+YE+EL  +EE F +ER  L+A NK EID LFE+R+EMEL YME KQ R EQY  EIE L  RD EE+ +LK KLET+IQ   Q
Sbjct:  200 QEQYELELAQMEEAFSKERNDLIANNKHEIDSLFERRREMELVYMEVKQTRDEQYLQEIEDLRLRDAEEYNELKKKLETNIQTLEQ 285          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A7S3XMC1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC1_HETAK)

HSP 1 Score: 85.9 bits (211), Expect = 5.240e-18
Identity = 49/85 (57.65%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    4 EEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            EEY  +L+AVE+ FLQER   LA ++ E+DGLF +R+E ELAYM +KQ+RQE  Q EIE  LT+D EE++KLKIKLE D+Q   +
Sbjct:  105 EEYAGQLDAVEDAFLQERADQLAAHRQEVDGLFARRREAELAYMRAKQERQEAAQREIEDNLTKDAEEYSKLKIKLENDVQTLQE 189          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A1V9ZLF4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLF4_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.350e-16
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKL 219
            QEEYE+ELE +EE FL+ER+ L+++NK EID LFEKR+EME+ YME+KQ R EQ Q EIE L  +D E++ KL
Sbjct:  193 QEEYELELEQIEEAFLKERDELISSNKAEIDSLFEKRREMEMTYMEAKQARDEQSQKEIEDLRVKDAEDYNKL 265          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A7S0XCF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCF9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.430e-16
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = 1
Query:    7 EYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ 258
            EYE E++A+EE  L+ERE L+  N  EID +FE RK  EL Y ESKQKR+EQYQ EI+ L+ +  +++ KLKI+LE +IQ   Q
Sbjct:  204 EYEKEIDAIEEALLEEREKLIVENTSEIDSMFEIRKNKELFYKESKQKREEQYQKEIDDLIAKGSDQYNKLKIELELNIQTLKQ 287          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A6G0X9S2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9S2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.680e-16
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTK 216
            QEEYE+ELE +E+ FL+ER+ L++TNK EID LFEKR+EME+ YME+KQ R EQ Q EIE L  +D E++ K
Sbjct:  195 QEEYELELEQIEDAFLKERDELISTNKSEIDSLFEKRREMEMTYMEAKQARDEQSQKEIEDLRIKDAEDYNK 266          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A024UBS7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UBS7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.400e-16
Identity = 44/74 (59.46%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKLK 222
            QEEYE+ELE +E+ FL+ER+ L++TNK EID LFEKR+EME+ +ME+KQ R E  Q EIE L  +D E++ KLK
Sbjct:  193 QEEYELELEQIEDAFLKERDELISTNKSEIDSLFEKRREMEMTFMEAKQARDELSQKEIEDLRVKDAEDYNKLK 266          
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Match: A0A485KZD6_9STRA (Aste57867_13819 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZD6_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.730e-16
Identity = 44/73 (60.27%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQKRQEQYQAEIEALLTRDGEEHTKL 219
            QEEYE+ELE +E+ FL+ER+ L++TNK EID LFEKR+EME+ YME+KQ R E  Q EIE L  +D E++ KL
Sbjct:  195 QEEYELELEQIEDAFLKERDELISTNKSEIDSLFEKRREMEMTYMEAKQARDELSQKEIEDLRVKDAEDYNKL 267          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5540.13840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAN0_9PHAE3.550e-2987.50NYD-SP28 domain-containing protein n=2 Tax=Ectocar... [more]
A0A835Z4S9_9STRA3.200e-2365.06Sperm tail-domain-containing protein n=1 Tax=Tribo... [more]
A0A418B885_9STRA1.870e-2161.63Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A0P1AXG6_PLAHL2.350e-1860.47Dynein regulatory complex protein 1 n=1 Tax=Plasmo... [more]
A0A7S3XMC1_HETAK5.240e-1857.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZLF4_9STRA1.350e-1661.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S0XCF9_9STRA3.430e-1653.57Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A6G0X9S2_9STRA4.680e-1661.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UBS7_9STRA6.400e-1659.46Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KZD6_9STRA8.730e-1660.27Aste57867_13819 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5540contigL-elsbetiae_contig5540:602..1333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue2e-31
Seed eggNOG ortholog2880.D8LIH6
Preferred nameDRC1
KEGG koko:K19754
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0008150,GO:0009799,GO:0009855,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032501,GO:0032502,GO:0032838,GO:0034622,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048513,GO:0048731,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0072359,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium-dependent cell motility
EggNOG OGs2CMDT@1,2QQ2B@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816584.545668-CDS-L-elsbetiae_contig5540:601..7781622816584.545668-CDS-L-elsbetiae_contig5540:601..778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5540 602..778 -
1691683664.6506321-CDS-L-elsbetiae_contig5540:601..7781691683664.6506321-CDS-L-elsbetiae_contig5540:601..778Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5540 602..778 -
1622816584.5570195-CDS-L-elsbetiae_contig5540:1252..13331622816584.5570195-CDS-L-elsbetiae_contig5540:1252..1333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5540 1253..1333 -
1691683664.6644034-CDS-L-elsbetiae_contig5540:1252..13331691683664.6644034-CDS-L-elsbetiae_contig5540:1252..1333Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5540 1253..1333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5540.13840.1prot_L-elsbetiae_contig5540.13840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5540 602..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5540.13840.1

>prot_L-elsbetiae_contig5540.13840.1 ID=prot_L-elsbetiae_contig5540.13840.1|Name=mRNA_L-elsbetiae_contig5540.13840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
QEEYEVELEAVEEVFLQEREALLATNKGEIDGLFEKRKEMELAYMESKQK
RQEQYQAEIEALLTRDGEEHTKLKIKLETDIQVCTQ
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mRNA from alignment at L-elsbetiae_contig5540:602..1333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5540.13840.1 ID=mRNA_L-elsbetiae_contig5540.13840.1|Name=mRNA_L-elsbetiae_contig5540.13840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5540:602..1333- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGAGTACGAGGTGGAGCTGGAGGCCGTAGAAGAGGTTTTTTTGCA GGAGAGAGAGGCACTGCTCGCCACCAACAAGGTGTGGCACCTTTTCAGCA GTTAGGATCCTTTGATTTCTTTGGCCTGGTCGATTGAGAAGCGACCTCCC GCGTACCTGCGTGATATCTACGGTTCGTCAACATCAAACTCTCTCTTCTG AAACCGGGGGATCAACCTATCGATGAGATGTGATTGAAAGCACATGAAGG CACGACTAAACTTGTGGATAATAACACAAATGCCAGTACGTCAACACACT GAGCCAAAAGCATGAGCTAGAGTCGTCGGAAACAACCATTGGATAGAAAA TACGTAAGATCAGCACGGGTGATTCAGGGACTGGCGGCCAGAGGTGCCCC CCCCCCCCCCGCCGCCCGTACGAGCCCTTTCAGGCTTGAGTCCAGCCCCT CCACGTATACACGGGGTGCAGTAGGAAGTTGATGGTCGTGTCTTCTTGGG CTGAAATGAACCGGCTCCTTGCTTACATCGGCGCGTTGGTTGGCTCCTTG GGCAGGGGGAGATCGACGGCCTGTTCGAGAAGCGGAAGGAGATGGAGCTC GCGTACATGGAGAGCAAGCAGAAGAGGCAGGAGCAGTACCAGGCGGAGAT CGAGGCTCTCCTCACGAGAGATGGAGAGGAGCACACCAAGCTCAAGATTA AGCTGGAGACCGACATTCAGGTATGTACGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5540:602..1333-

>mRNA_L-elsbetiae_contig5540.13840.1 ID=mRNA_L-elsbetiae_contig5540.13840.1|Name=mRNA_L-elsbetiae_contig5540.13840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig5540:602..1333- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGAGTACGAGGTGGAGCTGGAGGCCGTAGAAGAGGTTTTTTTGCA
GGAGAGAGAGGCACTGCTCGCCACCAACAAGCAGGAGGAGTACGAGGTGG
AGCTGGAGGCCGTAGAAGAGGTTTTTTTGCAGGAGAGAGAGGCACTGCTC
GCCACCAACAAGGGGGAGATCGACGGCCTGTTCGAGAAGCGGAAGGAGAT
GGAGCTCGCGTACATGGAGAGCAAGCAGAAGAGGCAGGAGCAGTACCAGG
CGGAGATCGAGGCTCTCCTCACGAGAGATGGAGAGGAGCACACCAAGCTC
AAGATTAAGCTGGAGACCGACATTCAGGTATGTACGCAGGGGGAGATCGA
CGGCCTGTTCGAGAAGCGGAAGGAGATGGAGCTCGCGTACATGGAGAGCA
AGCAGAAGAGGCAGGAGCAGTACCAGGCGGAGATCGAGGCTCTCCTCACG
AGAGATGGAGAGGAGCACACCAAGCTCAAGATTAAGCTGGAGACCGACAT
TCAGGTATGTACGCAG
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