prot_L-elsbetiae_contig554.13838.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig554.13838.1
Unique Nameprot_L-elsbetiae_contig554.13838.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length349
Homology
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BLAST of mRNA_L-elsbetiae_contig554.13838.1 vs. uniprot
Match: D8LH26_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH26_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 9.470e-131
Identity = 252/345 (73.04%), Postives = 284/345 (82.32%), Query Frame = 0 
Query:    1 MRSLEDSCFLKIVEAPE-SLNPARVQRALFSKKARQLVRRSAEMVAXXXXXXRRGMDTVSLRQKIITKLVNEGGGMAGSFPAPPAFLDDSFTSVSLANSKVGDSFIQGTLSMRCPMLRSVNLTACFYIRDASIKALLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSAGFSELDISGILVTTHTLEVVCRHCRRLEVLRMGFIEYMEATLTSTLPPLVANLRSLHVHWNSCVTDEFLSWAIQSLPRLEDLNLCGCSKVTIDGVSDMLYERQDALEALENGENAGEAPQQVHAIEKVNVRYTSLSKQDIEALQSAFQG 344
            MRSLEDSCF+KI ++PE SLNP RV+RALFSK A +LVRRS E+ A      +  MDTV LRQKIITKLV EG GMAGSFPAPPAFLD SFTSVSL NSK+GDSFI+ TLSMRCPMLRSV+LTACFYIRD++I++LLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                N+  F+ELDISG+ VTTHTLEV+C  CR LEVLR+GFIEYME TL  TLPPL+ NLRSLHVHWN+C+TDEFLSWA Q++PRL+DLNLCGCSKV++DGVSDM++ERQ   EALE   NAG     + AIEKVNVRYTSLSK DIEALQ+A+QG
Sbjct:    1 MRSLEDSCFVKIAQSPEVSLNPQRVERALFSKNATELVRRSTEIGAAGGNG-KGAMDTVRLRQKIITKLVEEGRGMAGSFPAPPAFLDKSFTSVSLVNSKIGDSFIRDTLSMRCPMLRSVDLTACFYIRDSAIESLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNITAPGVDALCGLHPNAPRFAELDISGLNVTTHTLEVICHRCRHLEVLRIGFIEYMEDTLKDTLPPLLPNLRSLHVHWNTCITDEFLSWASQAIPRLQDLNLCGCSKVSVDGVSDMIHERQ---EALEKDGNAG----LISAIEKVNVRYTSLSKHDIEALQAAYQG 337
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig554.13838.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH26_ECTSI9.470e-13173.04Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 271..296
e-value: 21.0
score: 12.0
coord: 139..164
e-value: 0.5
score: 19.4
coord: 165..190
e-value: 43.0
score: 9.6
coord: 113..138
e-value: 0.13
score: 21.4
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 192..344
e-value: 4.7E-16
score: 60.6
coord: 85..191
e-value: 2.9E-15
score: 58.0
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 89..294
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 93..286

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig554contigL-elsbetiae_contig554:25309..31408 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig554.13838.1mRNA_L-elsbetiae_contig554.13838.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig554 24706..31408 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig554.13838.1 ID=prot_L-elsbetiae_contig554.13838.1|Name=mRNA_L-elsbetiae_contig554.13838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=349bp
MRSLEDSCFLKIVEAPESLNPARVQRALFSKKARQLVRRSAEMVAAGGGG
GRRGMDTVSLRQKIITKLVNEGGGMAGSFPAPPAFLDDSFTSVSLANSKV
GDSFIQGTLSMRCPMLRSVNLTACFYIRDASIKALLSRCPLVERLYLRNC
RKLTDLSLEHIVRAGPNMTALDIGGCFNINAAAVENLCTVHPNSAGFSEL
DISGILVTTHTLEVVCRHCRRLEVLRMGFIEYMEATLTSTLPPLVANLRS
LHVHWNSCVTDEFLSWAIQSLPRLEDLNLCGCSKVTIDGVSDMLYERQDA
LEALENGENAGEAPQQVHAIEKVNVRYTSLSKQDIEALQSAFQGIAFL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf