mRNA_L-elsbetiae_contig5537.13829.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A6H5L574_9PHAE (PKD_channel domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L574_9PHAE) HSP 1 Score: 401 bits (1030), Expect = 5.140e-133 Identity = 224/301 (74.42%), Postives = 246/301 (81.73%), Query Frame = 1 Query: 592 MLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAYRGVVGGMRGEDTIFQSFIAFVGMTLCSLRTRIRWGNAWIRWRLAGSRSIAPHERQRRPSLKAFLQGSTGIYGVDGRLVVMMRRPHDRLTMEDRQLSFNCPRYITVTEMQALIQATPVPAAVADRLVRKIVHGWVFRSDEKLPSDFRRSSPSSSREYGSGN------VANLSSGSGSATDSSLRMLRRPSS 1476 MLTFH RMSIVTDTLSRASTHL+HFLFVFFLVIL F++LTWLLVGSST+EFSTLE+AW+SV RISLGESENFYPQIL AQP+VGPVVVVLYQVLG+VLLLNVVIAILLEAYRGV GM GEDTIFQSFIAFVGM+ CSL TRIRW A IRWRL G R+ + RPSLK FLQGSTG+ GVDGR VVM+RRP + T+ RQLSFNCPRYITVTEMQALI+ATPVPA VADRLVRKIVH WVFRSDE++ +S PSSS EYG+G V + S+TDSS M RRPSS Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACIRWRLGGRRNTS------RPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQLSFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGSFQS-PSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSS 294
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: D7FTQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ4_ECTSI) HSP 1 Score: 267 bits (682), Expect = 4.740e-78 Identity = 129/198 (65.15%), Postives = 159/198 (80.30%), Query Frame = 1 Query: 1 LNFGYCTMLLMDHLDVIPEDEVRSVTVQLVTYNGNQPSAYGTISIDFDFSHGGKVEMKQLVTAYILKGNIGQADDSRTRWLLGLIFTFMTFAMMWHDTKKWFRARRSKVKRNCCHCCCGFTFFSLILINILMWLVWAGFGETITFETVVQNDNNN-DRVLKAVTEQLLALQQAAVISAAYDIVFLLTTLTGLYRWIFQ 591 LNFGYCT+L+M+ LDVIP DEVRSV VQLVTYNGNQ SA+G+I+I F F HGG+VE +LVTAYIL GN GQ +D R RW+LGLIF MT AM+ HDTKKW+RAR +K +RN CHCCCGFTFF+LI++N+LMWL WA G+ I F+ V+Q ++ D V+ A+T Q+LALQ+AA+ S + I+FLLTTL GLYRWIFQ Sbjct: 329 LNFGYCTLLVMEDLDVIPRDEVRSVNVQLVTYNGNQGSAFGSINIGFTFDHGGEVEAHELVTAYILTGNAGQGND-RIRWILGLIFVCMTLAMIRHDTKKWYRARHAKARRNKCHCCCGFTFFTLIILNVLMWLGWASLGKVIAFDVVLQGTSSEEDSVMAALTGQILALQEAALFSWSLHIIFLLTTLAGLYRWIFQ 525
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: D7FTQ7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ7_ECTSI) HSP 1 Score: 227 bits (578), Expect = 7.320e-68 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 1 Query: 592 MLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAYRGVVGGMRGEDTIFQSFIAFVGMT 996 MLTFH RMSIVTDTLSRASTHLDHFLFVFFLVIL F++LTWLLVGSST+EFSTL EAW SVTRISLGESENFYPQIL AQP+VGPV VVLYQVLG+VLLLNVVIAI LEAYRGVV GMRGEDTIFQSFIAFVGM+ Sbjct: 1 MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLVEAWGSVTRISLGESENFYPQILDAQPTVGPVAVVLYQVLGVVLLLNVVIAIFLEAYRGVVSGMRGEDTIFQSFIAFVGMS 135
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: D7FTQ6_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ6_ECTSI) HSP 1 Score: 189 bits (481), Expect = 1.950e-53 Identity = 112/178 (62.92%), Postives = 125/178 (70.22%), Query Frame = 1 Query: 394 MWLVWAGFGETITFETVVQNDNNN-DRVLKAVTEQLLALQQAAVISAAYDIVFLLTTLTGLYRWIFQMLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAY 924 MWL WA G+ I + V+Q ++ D VL A MLTFH RMSIVTDTLSRASTHLDHFLFVFFLVIL F++LTWLLVGSST+EFSTLE+AW+SVTRISLGESENFYPQIL AQP+VGPVVVVLYQVLG+VLLLNVVIAILLE + Sbjct: 1 MWLGWASLGKVIANDVVLQGTSSEEDSVLDA------------------------------------MLTFHKRMSIVTDTLSRASTHLDHFLFVFFLVILAFAALTWLLVGSSTKEFSTLEDAWQSVTRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLLNVVIAILLETF 142
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A6H5JES1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES1_9PHAE) HSP 1 Score: 170 bits (430), Expect = 2.350e-45 Identity = 111/213 (52.11%), Postives = 127/213 (59.62%), Query Frame = 1 Query: 916 EAYRGVVGGMRGEDTIFQSFIAFVGMTL--------------------CSLRTRIRWGNAWIRWRLAGSRSIAPHERQRRPSLKAFLQGSTGIYGVDGRLVVMMRRPHDRLTMEDRQLSFNCPRYITVTEMQALIQATPVPAAVADRLVRKIVHGWVFRSDEKLPSDFRRSSPSSSREYGSGN------VANLSSGSGSATDSSLRMLRRPSS 1476 +AYRGVV GMRGEDTI SFIAFVGM+ C L+T IRW A+IRWRLAG R+ P + RRPSL+ FLQGSTG+ GVDGR VVM+R + T+ RQL ALI+A PVPA VA RLVRKIVH WVFRSDE++ +S PSSS EYGSG V LS+ TDSS MLRR SS Sbjct: 13 KAYRGVVSGMRGEDTILPSFIAFVGMSWWVLHSRQTARQPEQILTSVSCVLKTGIRWATAYIRWRLAGRRNTPPQDGPRRPSLRMFLQGSTGVCGVDGRPVVMVRGLPESSTILGRQLP------------AALIEAFPVPARVAGRLVRKIVHEWVFRSDERITGGVSQS-PSSSGEYGSGTGGGNGGVTVLSTRRTYCTDSSRPMLRRWSS 212
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A6H5JIW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW8_9PHAE) HSP 1 Score: 145 bits (365), Expect = 6.490e-37 Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 1 Query: 433 FETVVQNDNNN-DRVLKAVTEQLLALQQAAVISAAYDIVFLLTTLTGLYRWIFQMLTFHARMSIVTDTLSRASTHLDHFLFVFFL--------------------------VILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAA 828 F+ V+Q+ ++ D VL A+T +LALQ+A + S + I+FLLTTL GLY WIFQM TFH RMSIV DTLSRASTHL FLFVFFL V+L F++LT+LLVGSST+E STLE+AW+SV RIS GES+N YPQIL A Sbjct: 3 FDVVLQDTSSEADSVLGALTGPILALQEAELFSWSLYIIFLLTTLAGLYPWIFQMFTFHKRMSIVPDTLSRASTHLTQFLFVFFLERLTQLPDKRCLGVLVLVVVLTTPMVVVLAFAALTFLLVGSSTKEISTLEDAWRSVIRISPGESDNLYPQILDA 161
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: D7G2W7_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W7_ECTSI) HSP 1 Score: 126 bits (317), Expect = 5.160e-27 Identity = 104/342 (30.41%), Postives = 181/342 (52.92%), Query Frame = 1 Query: 1 LNFGYCTMLLMDHLDVIPEDEVRSVTVQLVTYNGNQPSAYGTISIDFDFSHGGKVEMKQLVTAYILKGNIGQADDSRTRWLLGLIFTFMTFAMMWHDT-KKWFRAR--RSKVKRNCCHC-CCGFTFFSLILINILMW--LVWAGFGETIT-FETV-VQNDNNNDRVLKAVTEQL--LALQQAAVISAAYDIVFLLTTLTGLYRWIFQMLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAYRGVV--GGMRGEDTIFQSFIAFVG 990 LNF C ML + + D VRSV+++ TYNG + + I F+ GG+V+M V + + G + R + F M + D + W R R ++ + H T +L+ + +W ++W T FE + + NN ++A +E+L +AL++ +AA ++ GL R +F ML FH R+S+VTD L+ ++ HL HF +FF+V+ V+S+L W++ G S+ F+T +++ ++TRI+LGE +N YP ++ + +++V YQ L +LLLN+VI+ILL+A++ V + DT++Q+ + +G Sbjct: 41 LNFNLCGMLAILGGPDVMTDAVRSVSLRFNTYNGQCDGLFSFVDITALFTLGGEVKMVTSVEVFSMPFFFGSSPAIVGRAIAMFAFGLMLVIYIGKDVLRAWREVRDGRHRLSMSLRHVPVTTATALNLVGDCVFLWNLVLWVNVAVTAAKFELIPTLSYNNASEQVRAFSEELALVALERWKRDAAAVA-----GSIFGLTR-LFIMLRFHPRLSLVTDVLTASAVHLVHFFIMFFMVVGVYSNLVWVIFGPSSLLFATWTKSFVTMTRIALGEFDNIYPLMVEIDGAAAFMIIVTYQTLQCILLLNIVISILLDAFQMVQKRNSVVAADTLWQTVMTTLG 376
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A6H5JEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ3_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 9.800e-15 Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 Query: 1 LNFGYCTMLLMDHLDVIPEDEVRSVTVQLVTYNGNQPSAYGTISIDFDFSH 153 LNFGYCT+L+M+ LDVIP EVRSV VQLVTYNGNQ SA+G+I++ F F H Sbjct: 59 LNFGYCTLLVMEDLDVIPRHEVRSVNVQLVTYNGNQGSAFGSINLGFTFDH 109
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A8J5X0G5_DIALT (PKD_channel domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X0G5_DIALT) HSP 1 Score: 75.1 bits (183), Expect = 2.580e-10 Identity = 61/221 (27.60%), Postives = 112/221 (50.68%), Query Frame = 1 Query: 367 FSLILINILMWLVWAGFGETITFETVVQNDN----NNDRVLKAVTEQLLALQQAAVISAAYDIVFLLTTLTGLYRWIFQMLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAYRGVVGGMRGEDTIFQSFIAFVGMTLCSLRTR 1017 ++L ++NI++W+ +A G V+ ++ + E L L+ A + IV + + +R +F+ L FH + S+VT TL RA L HFL VF +V+++++ + + ++G + ++TL +A S+ + + + + I+ P VGPV Y +L ++L+NV++AILL+AY V R + I+ I + SL R Sbjct: 461 YALAVLNIVLWVKFAVEGAQYRMPDFVEKQGTYAPDSHELWGEFMENLGLLETAEDDFVNFTIVQSVLLMVLTFR-LFKFLAFHQQFSLVTATLLRAGASLAHFLVVFAIVLVMYAFVGFNMLGHKLERYNTLGKAINSMCSMLVFDDTVSFADIMDVAPLVGPVFYWSYFILSSLMLINVLLAILLDAYASVSRASRTTNFIWVDLIVQYRLFRTSLTDR 680
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Match: A0A8K1CIA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIA9_PYTOL) HSP 1 Score: 61.2 bits (147), Expect = 4.010e-6 Identity = 76/300 (25.33%), Postives = 134/300 (44.67%), Query Frame = 1 Query: 67 RSVTVQLVTYNGNQPSAYGTISIDFDFSHGGKVEMKQLVTAYILKGNIGQADDSRTRWLLGLIFTFMTFAMMWH-------DTKKWFRARRSKVKRNCCHCCCGFTFFSLILINILMWLVWAGFGETITFETV---VQNDNNNDRV-LKAVTEQLLALQQAAVISAAYDIVFLLTTLTGLYRWIFQMLTFHARMSIVTDTLSRASTHLDHFLFVFFLVILVFSSLTWLLVGSSTQEFSTLEEAWKSVTRISLGESENFYPQILAAQPSVGPVVVVLYQVLGIVLLLNVVIAILLEAYRGV 933 + + + +VTYNG + Y + DF GG +E+ +T I + L+G+ F WH D + + R S + C F+ L + M + F E + V + N+++R+ L AVT+ AL++ A I+ A ++ +L+ L I FH R++I+T T++ A F VF ++ + FS +L G ++FSTL +++ + G + Y I Q VG + Y V+ ++LLN+++AI+L++Y V Sbjct: 210 QQLVITVVTYNG-ELQGYTVSKLQLDFHQGGYIELSSTITPTI-SDPYKKTAAITLDVLVGICFLATILDPAWHFVKAIRQDGRHFLRKIESWGLVDLCSTGFVAAFYGLWFSMVAM-MYTKEFRENLARLVVSGKTFDANSDERLGLLAVTD---ALEEVANITIAMRLLAMLSVF-ALGAQILTQFRFHPRLNILTRTIANALHQFAAFFVVFIVIFMTFSVSGMVLFGDRVEDFSTLPRTFEACINMLFGNFD--YSIIRNLQAPVGMLYYWAYMVVVCLVLLNMMLAIVLDSYAEV 500 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5537.13829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5537.13829.1 >prot_L-elsbetiae_contig5537.13829.1 ID=prot_L-elsbetiae_contig5537.13829.1|Name=mRNA_L-elsbetiae_contig5537.13829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=490bp MLLMDHLDVIPEDEVRSVTVQLVTYNGNQPSAYGTISIDFDFSHGGKVEMback to top mRNA from alignment at L-elsbetiae_contig5537:147..7470+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5537.13829.1 ID=mRNA_L-elsbetiae_contig5537.13829.1|Name=mRNA_L-elsbetiae_contig5537.13829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7324bp|location=Sequence derived from alignment at L-elsbetiae_contig5537:147..7470+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5537:147..7470+ >mRNA_L-elsbetiae_contig5537.13829.1 ID=mRNA_L-elsbetiae_contig5537.13829.1|Name=mRNA_L-elsbetiae_contig5537.13829.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2940bp|location=Sequence derived from alignment at L-elsbetiae_contig5537:147..7470+ (Laminarionema elsbetiae ELsaHSoW15)back to top |