mRNA_L-elsbetiae_contig5531.13824.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5531.13824.1
Unique NamemRNA_L-elsbetiae_contig5531.13824.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5531.13824.1 vs. uniprot
Match: D8LG49_ECTSI (Succinate dehydrogenase assembly factor 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG49_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.050e-27
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 2 
Query:    2 RSEFKAHKEATGDQVAQFMHGWQSYLEQLRDESGQVGRSLSEDDAAHLNDEQRDQLFRLKQQASAS--SAPPEGAQGR 229
            RSEFKAHKEATGDQVAQFMH W+SYLEQLR++ GQVGRSLS  D +HLNDEQR QL RLKQQAS+S  S+   GAQGR
Sbjct:   39 RSEFKAHKEATGDQVAQFMHAWRSYLEQLRNQGGQVGRSLSAADVSHLNDEQRKQLVRLKQQASSSPPSSASGGAQGR 116
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BLAST of mRNA_L-elsbetiae_contig5531.13824.1 vs. uniprot
Match: L1JE82_GUITC (Succinate dehydrogenase assembly factor 3 n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JE82_GUITC)

HSP 1 Score: 54.7 bits (130), Expect = 3.450e-6
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:    2 RSEFKAHKEATGDQVAQFMHGWQSYLEQLRDE--SGQVGRSLSEDDAAHLNDEQRDQLFRLKQQA 190
            RSEFK HK+A   +V  F   W+ YL  +  +  SG  GR+L E++AAHLN EQ++ L RL+++A
Sbjct:   38 RSEFKQHKKAKVGEVKVFARQWKEYLYTIEAQAASGTFGRNLREEEAAHLNQEQKENLKRLEEEA 102
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BLAST of mRNA_L-elsbetiae_contig5531.13824.1 vs. uniprot
Match: A0A7S0LWL8_9CRYP (Succinate dehydrogenase assembly factor 3 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWL8_9CRYP)

HSP 1 Score: 50.8 bits (120), Expect = 8.030e-5
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 2 
Query:    2 RSEFKAHKEATGDQVAQFMHGWQSYLE--QLRDESGQVGRSLSEDDAAHLNDEQRDQLFRLKQQA 190
            +SEFKAHK A   QV +F+  W+ Y+   +++ + G++GR L E     LN+EQR++L +LK++A
Sbjct:   29 KSEFKAHKTAKIGQVKEFVRQWKEYMYTLEIQAKQGKLGRELDESKIEVLNEEQREKLSQLKEEA 93
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5531.13824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG49_ECTSI1.050e-2776.92Succinate dehydrogenase assembly factor 3 n=2 Tax=... [more]
L1JE82_GUITC3.450e-646.15Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
A0A7S0LWL8_9CRYP8.030e-541.54Succinate dehydrogenase assembly factor 3 n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5531contigL-elsbetiae_contig5531:8332..11053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue8.5e-13
Seed eggNOG ortholog2880.D8LG49
Preferred nameACN9
KEGG koko:K08827,ko:K19950
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006082,GO:0006105,GO:0006109,GO:0006111,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009628,GO:0009889,GO:0009987,GO:0010675,GO:0010906,GO:0015976,GO:0016043,GO:0017144,GO:0019222,GO:0019752,GO:0022607,GO:0031323,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0033108,GO:0034552,GO:0034553,GO:0034622,GO:0036296,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050879,GO:0050881,GO:0050896,GO:0055093,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0071704,GO:0071840,GO:0080090
EggNOG free text desc.mitochondrial respiratory chain complex II assembly
EggNOG OGsKOG4100@1,KOG4100@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041,ko04131
Ec32 ortholog descriptionACN9
Ec32 orthologEc-11_001950.1
Exons2
Model size739
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5531.13824.1prot_L-elsbetiae_contig5531.13824.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5531 8839..10998 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.9655337-UTR-L-elsbetiae_contig5531:8331..88381622816582.9655337-UTR-L-elsbetiae_contig5531:8331..8838Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5531 8332..8838 -
1691683663.470752-UTR-L-elsbetiae_contig5531:8331..88381691683663.470752-UTR-L-elsbetiae_contig5531:8331..8838Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5531 8332..8838 -
1622816582.9997678-UTR-L-elsbetiae_contig5531:10998..110531622816582.9997678-UTR-L-elsbetiae_contig5531:10998..11053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5531 10999..11053 -
1691683663.5187752-UTR-L-elsbetiae_contig5531:10998..110531691683663.5187752-UTR-L-elsbetiae_contig5531:10998..11053Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5531 10999..11053 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816582.9761863-CDS-L-elsbetiae_contig5531:8838..89641622816582.9761863-CDS-L-elsbetiae_contig5531:8838..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5531 8839..8964 -
1691683663.4946022-CDS-L-elsbetiae_contig5531:8838..89641691683663.4946022-CDS-L-elsbetiae_contig5531:8838..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5531 8839..8964 -
1622816582.989236-CDS-L-elsbetiae_contig5531:10947..109981622816582.989236-CDS-L-elsbetiae_contig5531:10947..10998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5531 10948..10998 -
1691683663.5069306-CDS-L-elsbetiae_contig5531:10947..109981691683663.5069306-CDS-L-elsbetiae_contig5531:10947..10998Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5531 10948..10998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5531.13824.1

>prot_L-elsbetiae_contig5531.13824.1 ID=prot_L-elsbetiae_contig5531.13824.1|Name=mRNA_L-elsbetiae_contig5531.13824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MHGWQSYLEQLRDESGQVGRSLSEDDAAHLNDEQRDQLFRLKQQASASSA
PPEGAQGR*
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mRNA from alignment at L-elsbetiae_contig5531:8332..11053-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5531.13824.1 ID=mRNA_L-elsbetiae_contig5531.13824.1|Name=mRNA_L-elsbetiae_contig5531.13824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2722bp|location=Sequence derived from alignment at L-elsbetiae_contig5531:8332..11053- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTCGGAATTCAAAGCACACAAAGAAGCCACCGGGGACCAGGTGGCGC
AGTTCATGCACGGGTGGCAGAGTTACCTGGAGCAGTTGCGGGATGAAAGC
GGTCAGGTGAGTCGCTCCGAAGATTCAGATTCACGACGTCGACCCCCGTC
CCCATTCTTCTCGGGTTCTGGCGCAGCATCATCGAAGAGTTGGGACACGC
AAGCACCGTATGTTCGTCGCTTGGATCTACGCTGATTGTCCCACGGTGGT
AGCCGCGCCTCGTCGCCCGGGATCCTTTGTTCCTCTCCCCGTGCTCTGCC
CATGTTTTCGTCCGTAAGCAGCAGTACCAGTAGATGTCAAGCCCGCCTTC
GTGAAAATGGCGAGCGTAGATGTTTTGCGCGTAACACCCCATGTTTTTGG
AAGCACAACCTTTCACAAAAGTCTTGACCTTTTGAGCAAGATTTTTATTT
CGTCTGTTTATGGGAGAAAATCTTTAAACAAATCTTCCCCCAATATTTGA
TTTCCGACAAAATGCTTGGCTTTCGAGCAAATGCTTGGCAAAGATTTGAC
CATCTGGCAGCTCGACAAAATCTTGCCCGGAGGCGGCGAGATTGTTTCTC
CTGCAGACTCCCGTCGCCAGCACCGACCACTGCGCCCTCAATACTGAACG
TGACGACTTTGTAAACTGCTCCGGGTAATAACCCTAGAGCCTTCGCGTAA
ACGTACCACCCGCTCGTAAATGGCGGGAGCCAGTCAGTCGTGTGGGAAAT
ATTTTTTTGTGCAGGGTGTCTGGAGAAAGCATCGTTTGCGCTTTGAAACA
GCCGAAAATCGGCCTGCTGCAAGGAGAGCACACGATGTCGCAGTCCAGCT
CTCGCCCGCTAGACCATTTAATTTTGTGAGACCTTCTTGGCTTTCACCTC
CATAAACGTGTCTCATCGAGTTGGGCATGGGTTACCAGTGTGTGCCTTCA
GTCGGCAGCAAATCGCATCGCCGTGGAAACGAGTGTTTTGCGTGTTCTTT
TTTTAGCGCGGTGAACAAGTAGTCTGTACTCAAGTAAAAAACAGAGGCCG
GATTTTTCACGTTTTGCACTCTCATGTCCACGGCAATGTGATTTGCTGCC
GAGTGAAGGCGCCCCACTGCCAAGCCACGCCCACCCCGATGAGATACGTT
TGTAGAGGTGACAGCAAAGAAGGTGTCACATGAATAAATGGTCTAGCGGG
CGAGATCTGGTCTGCGATGTAGTGAGCTGTCTGCGTCGGCGATTTGTTTT
GGCCGTTGCGGCAAGTTGCGGCGTGAAGTGCACCTACGCTACTTGGCGCT
ACCCCTAGAAAACGTTTCTGTATGCCTGAGAGGAGCCTCCGGTACAATCC
GACGGCTAAGATATCAACACGGAAGCTTTTCGTTTGGCCGGGGCCCTTTT
TCGAGCTCGCTATGTTCCAGTTTCGTGGCGCATTGGTGGTAAGTCAGCTG
TCAACCGGCGAGACCAATCTCCACCACGGTCGAAAATTTTGAGCAGATCA
AGATTTTTCCCCCACAGCGGCTGGCACAAAATCTTCTATTGCGGAATATT
GACAGGAAAATCTTGACCAAAAGATCAAGATTTTTGCCAAAGATTAAGCT
TCCATAAGCATGGGTGTAACGCGAGTGCGGGCTTTTATTTGTAGCTGCGT
ACTACTGTAGGGGCGGTTGTTTGTGCCGACAGTGCCGGCAGCGCCGCCGA
TGTGGTGCAATGCAAGAACGGGAGAATGGGAAAAAGGAAAGCGAATGGTA
CCATCAGTTCTTGATACAAGAGCGCGCAAAACAAACGTCCAAGGTTTAAA
TGTGGGACCAGTGTAGCGAGAGAGCTGGAGATGTGCAAGGCTGTACATAT
ACGCTGGAAGATGGTGAGGCAATGCACGTATCTCAGAAGCTGTTGTCCCT
TCTTCCTCCCCTCAGAACGAGAGCGGCCAGGGGCCCGCTGCGCGCCGTTG
CCCCCCCCGTACCCCTACCTATCTTCACCAACGGTGGACTAGCAGACAGC
CTACATAGGAAACCCACCCGCCCACCCCGTGCGCGCACTCAAATGCCCTT
TCCTCGCTTTTCAATTAATGGTGTTACGTTTCCGCTCAGGTTGGTCGATC
CTTGAGCGAAGACGATGCGGCGCATCTCAACGACGAGCAGCGCGACCAGC
TGTTCCGACTAAAACAGCAGGCTTCGGCATCGTCTGCTCCGCCAGAGGGG
GCCCAGGGCCGATAACTCGGGGGAGCAGCCCCTTGGTGTGCTGTCTTTTG
TGTTGGGGAGAAAGTGGGGGGGCGACTGCTACTGTCACAAAAATGGGTCG
CATTCGTTTTGGTTTGGTTGCGTGTCCCCAGCCGCCGCGTGGAAAGCGAT
GCCTCTCTTCGGACCGTTTTTTTTTGTGGCGACGCGTGGAAAGACGTCCC
TCTCGCGTTGGACCATTCATTGGGCTCTTCGCCGCTGCGCCCTTCTAGCA
TGGTTGTATTGTGGTGGGTAGGGTAGATAAACAGATTACCTTATAGTCTA
GGTGTTGGTTTTTTTGTGGCGCTTTTCTCTCTTCCGCGCTTTAACTTCGT
CGCCGTCAGAGTGTCGAGGCGGAGGTACCTACCTGCTGTTTCTGCTGTTG
TTGTACATTCCAGTATTTTCCAGTGTTTGTTTCTTTGCGACCAAGCAGCG
CCGAGAGGGTGCGCATGCCTGGACGCCCTGTGTCGTCTGGTTTTATGGGA
GAGGCCATCGCTACATTTTGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5531:8332..11053-

>mRNA_L-elsbetiae_contig5531.13824.1 ID=mRNA_L-elsbetiae_contig5531.13824.1|Name=mRNA_L-elsbetiae_contig5531.13824.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig5531:8332..11053- (Laminarionema elsbetiae ELsaHSoW15)
ATGCACGGGTGGCAGAGTTACCTGGAGCAGTTGCGGGATGAAAGCGGTCA
GATGCACGGGTGGCAGAGTTACCTGGAGCAGTTGCGGGATGAAAGCGGTC
AGGTTGGTCGATCCTTGAGCGAAGACGATGCGGCGCATCTCAACGACGAG
CAGCGCGACCAGCTGTTCCGACTAAAACAGCAGGCTTCGGCATCGTCTGC
TCCGCCAGAGGGGGCCCAGGGCCGATAAGTTGGTCGATCCTTGAGCGAAG
ACGATGCGGCGCATCTCAACGACGAGCAGCGCGACCAGCTGTTCCGACTA
AAACAGCAGGCTTCGGCATCGTCTGCTCCGCCAGAGGGGGCCCAGGGCCG
ATAA
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