mRNA_L-elsbetiae_contig5531.13823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: D8LG48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG48_ECTSI) HSP 1 Score: 291 bits (744), Expect = 5.050e-96 Identity = 147/196 (75.00%), Postives = 170/196 (86.73%), Query Frame = 1 Query: 1 VLTVFFFIFACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDGGYDNFDAQEDRGAYNSSAYAYDGATFGTGGIGGG-------GVEEDGRGIPQEADL 567 VLT+ FFI ACVVSSNANAG NV+LTA++YVAYVGLLA +FN+KR+ D G+D +MAIEP+ GG LIG+TTMMCFLSLMTAVYWG+MSGC+ DTDDV GYSCY+++GMAAVAWFASFLLI+E +TLAALI WKED+FFVDGGYDNFDAQEDRGAY+SSAYAYDGATFGTGG+GGG D G+PQ+ADL Sbjct: 28 VLTICFFICACVVSSNANAGLNVVLTAMMYVAYVGLLAVVFNRKRATDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALILWKEDMFFVDGGYDNFDAQEDRGAYSSSAYAYDGATFGTGGMGGGLXXXXXXXXNGDDDGVPQQADL 223
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A835YPK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK3_9STRA) HSP 1 Score: 127 bits (319), Expect = 5.950e-32 Identity = 74/164 (45.12%), Postives = 99/164 (60.37%), Query Frame = 1 Query: 16 FFIFACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMA----------------IEP------MAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDG--GYDNF 435 FF+ ACVV+ NANAGFN++LTA++Y+A+ A + + + GL A +A +EP MAGGV IG T+ + LSL TAVYWG MSGC + VAGYSCY+A GM A + FA+ LL+ E L AAL++WK+ +F DG GY+ F Sbjct: 27 FFVCACVVARNANAGFNIVLTALLYIAHALYTAYVVGR----ESGLHALLANLGSGXXXXXXXAHGLVEPSSTSRLMAGGVAIGTTSALTLLSLTTAVYWGRMSGCTAGVSGVAGYSCYAAGGMRAASAFAALLLVCEALLAAALVAWKDALFAADGLDGYEGF 186
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A7S2V692_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V692_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 2.280e-17 Identity = 49/135 (36.30%), Postives = 77/135 (57.04%), Query Frame = 1 Query: 1 VLTVFFFIFACVVSSNANAGFNVILTAIIYVAY-VGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKED 402 VLT + I + VV+S ANAGFN +LT ++Y Y VG + K ++ G LIG + ++ LSL TA+YWG+++ C++ ++ ++ YSC + G AV FAS L I +G AL++WK++ Sbjct: 22 VLTACYLICSFVVASTANAGFNAVLTGLVYAVYCVGAYQVLHKSKTALSVGF-------------LIGFSALLIVLSLETAIYWGQLANCETVSESISQYSCSNKSGYRAVCAFASLLFILQGAMTTALVAWKDE 143
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A7S1TNM9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNM9_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 2.450e-16 Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 1 Query: 34 VVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDGGYDNFDAQED-----RGAYNSSAYA-YDGATF 498 VV++ ANAGFN +LTAI+ +V + N+ +S +A G +IG++TMM FL LMTAV+WG++SGC+ DD YSC + A + L + + L+ W++D GYD+ GA +++AYA YD +T+ Sbjct: 33 VVAATANAGFNAVLTAILSCTFVVGAYRVLNRSQST------------LAVGFVIGVSTMMSFLMLMTAVFWGQLSGCEDVKDDPDQYSCDNKKAYGATCAMSVLLFLLDVSFTILLVLWRDDFMSESSGYDDIGGNSAFVNNAPGAADANAYAAYDSSTY 181
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 6.300e-16 Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 1 Query: 34 VVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDGGYDNFDAQEDRGAYNSSAYAYDGATFGT 504 VV+S AN GFN +LTA++Y+ YV + + + P+A G ++G++ M+ FLSLMTA++WG+++ C D+ YSC + +A FA+ L + + + +AL+ W+++ YD D GA +SSA G GT Sbjct: 33 VVASTANMGFNAVLTALLYIFYVAGTYHVLQRSKM------------PLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYD--DIHGAGGASSSSAAGLPGYEGGT 175
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A7R9U994_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U994_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 5.460e-14 Identity = 49/161 (30.43%), Postives = 80/161 (49.69%), Query Frame = 1 Query: 28 ACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDGGYDNFDAQ----EDRGAYNSSAYAYDGATF 498 ACVV+ ANAGFN +LTA+ +V + + +S +A G +IG+ TMM L MTA++WG++SGC+ +DV Y+C + A F+ L + + L+ W++D Y++ + + GA +S AYD +T+ Sbjct: 58 ACVVAPTANAGFNAVLTALCSCLFVVGAYRVLYRSQST------------LAVGFVIGVATMMSLLMFMTAIFWGQLSGCEKVDEDVDQYTCDNKKAYGATCAFSVLLFLLDTAFTILLVLWRDDFMGETAAYEDIGSSPFVNDQPGAEGNSYAAYDSSTY 206
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.470e-10 Identity = 41/129 (31.78%), Postives = 67/129 (51.94%), Query Frame = 1 Query: 16 FFIFACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKED 402 FFI ACV + AN GFNV+ T+ + +V + + + + L + + G L+G++ +LSL TA++WG+++ C ++ YSC + AV FA+ L I +G A L WK+D Sbjct: 37 FFICACVAAKTANMGFNVVFTSFCFGFHVAVGILV------IHRSLHTQLWV-----GFLLGLSGATAWLSLQTAIFWGQLADCDRHAHHLSQYSCSNVSAYKAVCAFAALLFILQGGLFAVLAVWKDD 154
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 6.300e-10 Identity = 54/152 (35.53%), Postives = 82/152 (53.95%), Query Frame = 1 Query: 1 VLTVFFFIFACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTD-DVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALIS-----WKEDIFFVDGGYDNFD 438 V T FFI A VV+S NAGF+V+LT ++ + + A++ KR D S+ G LIG+T ++ ++LMTA+YWG+++GC SD D D YSC + M VA FAS + + + + L+ +ED G Y ++D Sbjct: 39 VFTAAFFICALVVASIDNAGFDVVLTGLLLCVWE--VGAMWLLKRGPH---DTSL-------GFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYD 178
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A7R9YCB5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCB5_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.990e-9 Identity = 34/111 (30.63%), Postives = 58/111 (52.25%), Query Frame = 1 Query: 178 MAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDIFFVDGGYDNFDAQ----EDRGAYNSSAYAYDGATF 498 +A G +IG+ TMM L MTA++WG++SGC+ +DV Y+C + A F+ L + + L+ W++D Y++ + + GA +S AYD +T+ Sbjct: 23 LAVGFVIGVATMMSLLMFMTAIFWGQLSGCEKVDEDVDQYTCDNKKAYGATCAFSVLLFLLDTAFTILLVLWRDDFMGETAAYEDIGSSPFVNDQPGAEGNSYAAYDSSTY 133
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Match: A0A482SCT2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCT2_9ARCH) HSP 1 Score: 58.9 bits (141), Expect = 8.530e-7 Identity = 39/135 (28.89%), Postives = 71/135 (52.59%), Query Frame = 1 Query: 1 VLTVFFFIFACVVSSNANAGFNVILTAIIYVAYVGLLAAIFNKKRSVDQGLDASMAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAWGMAAVAWFASFLLIAEGLTLAALISWKEDI 405 V V + I A ++SN AGFN +L II +A +GL + + + V + L G+++G + M+ F++L +A++WG+ S C ++ + CY+ M + F+ FL + +AA+I +K D+ Sbjct: 27 VFVVCYLISALFIASNTYAGFNSLLLGIIIIAVIGL--SYYGLFKEVTRTLF----------GIVLGCSVMLIFMTLQSAIFWGQYSDCTPNSLLNSVTQCYNPAAMKSCCTFSVFLFLTYIAQVAAMIRYKNDV 149 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5531.13823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5531.13823.1 >prot_L-elsbetiae_contig5531.13823.1 ID=prot_L-elsbetiae_contig5531.13823.1|Name=mRNA_L-elsbetiae_contig5531.13823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp MAIEPMAGGVLIGMTTMMCFLSLMTAVYWGEMSGCQSDTDDVAGYSCYSAback to top mRNA from alignment at L-elsbetiae_contig5531:3112..6524+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5531.13823.1 ID=mRNA_L-elsbetiae_contig5531.13823.1|Name=mRNA_L-elsbetiae_contig5531.13823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3413bp|location=Sequence derived from alignment at L-elsbetiae_contig5531:3112..6524+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5531:3112..6524+ >mRNA_L-elsbetiae_contig5531.13823.1 ID=mRNA_L-elsbetiae_contig5531.13823.1|Name=mRNA_L-elsbetiae_contig5531.13823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig5531:3112..6524+ (Laminarionema elsbetiae ELsaHSoW15)back to top |