mRNA_L-elsbetiae_contig5524.13812.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5524.13812.1
Unique NamemRNA_L-elsbetiae_contig5524.13812.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5524.13812.1 vs. uniprot
Match: A0A6H5KPQ4_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPQ4_9PHAE)

HSP 1 Score: 397 bits (1020), Expect = 1.430e-136
Identity = 189/221 (85.52%), Postives = 201/221 (90.95%), Query Frame = 1 
Query:  484 MFRNSKLTSEHKFLDIGCGIASIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAFKEAVFSEEEFRALMHPDVVSERVHLFK------WEIPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLLDKLKGDPTNNGKILITLEHIAEWQPTCWERRSYKYSNNTRRAATYAAAELEFWEYKIVSQWECPGCTSLNSDMVNDCVVCGTYCRGKRNSKRL 1128
            MFRNSKLT+ HKFLDIGCGI SIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAF++AVF+E +  AL+HPDVV ++VHLFK      WE PEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLL KLK DP NNGKIL+TLEHIAEWQPTCWERRSYKYS+NTRRAATYAA ELEFWEY +VSQWECPGCTS+NSD VNDCVVCGTYC GKRNSKRL
Sbjct:    1 MFRNSKLTANHKFLDIGCGIGSIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKGCFLEQWENPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYSDNTRRAATYAAKELEFWEYTVVSQWECPGCTSINSDAVNDCVVCGTYCSGKRNSKRL 221
[Close]
BLAST of mRNA_L-elsbetiae_contig5524.13812.1 vs. uniprot
Match: D7FU81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU81_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 2.190e-111
Identity = 182/252 (72.22%), Postives = 203/252 (80.56%), Query Frame = 1 
Query:  208 DNCRLCCPECGFDLLKLDIVDVHTEEQAYEGTPEQEQAYKTFERALKTSLEDARFGIGKTREMFEEPFKGSIGSGANRTAMYGSVFEAAVDQMFRNSKLTSEHKFLDIGCGIASIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAFKEAVFSEEEFRALMHPDVVSERVHLFKWE--IPEVRDADFIFFNNSSGWFNNSKALNNPDEHSLESRLLDKLKGDPTNNGKILITLEHIAEWQPTCWERRSYKYS 957
            +N RLCCPECG+DLLK+D+VDV T+EQ YEGTPEQEQAYKTFERALK SLED RFGIGKTRE FE+PFKGSIGSG+NRTAMYGSVFEAAVD MFR SKLT+ HKFLDIGCGI SIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAF++AVF+E +  AL+HPDVV ++VHLFK    + + R         +S     S  +      +    LL KLK DP NNGKIL+TLEHIAEWQPTCWERRSYKYS
Sbjct:  511 ENFRLCCPECGYDLLKVDVVDVLTQEQTYEGTPEQEQAYKTFERALKVSLEDPRFGIGKTREEFEDPFKGSIGSGSNRTAMYGSVFEAAVDLMFRKSKLTANHKFLDIGCGIGSIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAFQKAVFAERDLGALLHPDVVEQKVHLFKSPRAVSKARGRPPRLGTRTSF----SSTIAAAGSTTARRWLLKKLKNDPRNNGKILVTLEHIAEWQPTCWERRSYKYS 758
[Close]
BLAST of mRNA_L-elsbetiae_contig5524.13812.1 vs. uniprot
Match: W7TUH3_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUH3_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.150e-7
Identity = 71/261 (27.20%), Postives = 117/261 (44.83%), Query Frame = 1 
Query:  319 AYKTFERALKTSLEDARFGIGKTREMFEEPFKGSIGSGANRTAMYGSVFEAAVDQMFRNSKLTSEHKFLDIGCGIASIVLQAAAWAGCQAAGIEIVEDRFAGAVELHSAFKEAVFSEEEFRALMHPDVVSERVHLFKWEIPEVRDAD-------FIFFNNSSGWFNNSKALNNPDEHSLESRLLDKLKGDPTNNGKILITLEHIAEWQPTCWERRSYKYSNNTRRAATYAA-AELEFWEYKIVSQWECPGCTSLNSDMVND 1077
            +YK +  AL+   ED+  G+     M     KG       RT MYG++    + +M R + +T + +FLDIG G+ ++VLQ AA  GC A GIE+   RF  +  L    +E +    E         V++  +  + +  +VRD +        I+FNN   WF+ + +     E S+E   + KL    T  G  L+ L+ I   +   +  + Y   ++     T+A  A+  F   K+   W C  C   N+ + +D
Sbjct:  348 SYKEWCLALQVVSEDSG-GVSSLENM--SAIKGVKRCDGMRT-MYGAIRAPLIQEMIRFAGVTRQDRFLDIGSGLGTVVLQMAAVTGCHATGIELEASRFTISSMLS---EELIHLMAELSTSRETGFVADLKNRIEMKNEDVRDHEETILQSTVIYFNNHGVWFDETSSKQG--EISVE-HWVAKLFAR-TAVGTRLVILKSIPHLKGNWFSEQMYMARSDW---LTWARDAKPLFCYTKLKDTWTCEKCQHENAIVGDD 594
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5524.13812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPQ4_9PHAE1.430e-13685.52RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D7FU81_ECTSI2.190e-11172.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TUH3_9STRA2.150e-727.20Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5524contigL-elsbetiae_contig5524:2667..12141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size1131
Cds size1131
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.8383317-CDS-L-elsbetiae_contig5524:2666..27801622816581.8383317-CDS-L-elsbetiae_contig5524:2666..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 2667..2780 -
1691683662.6681674-CDS-L-elsbetiae_contig5524:2666..27801691683662.6681674-CDS-L-elsbetiae_contig5524:2666..2780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 2667..2780 -
1622816581.8497012-CDS-L-elsbetiae_contig5524:3942..40001622816581.8497012-CDS-L-elsbetiae_contig5524:3942..4000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 3943..4000 -
1691683662.6798728-CDS-L-elsbetiae_contig5524:3942..40001691683662.6798728-CDS-L-elsbetiae_contig5524:3942..4000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 3943..4000 -
1622816581.8599331-CDS-L-elsbetiae_contig5524:4788..49371622816581.8599331-CDS-L-elsbetiae_contig5524:4788..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 4789..4937 -
1691683662.696757-CDS-L-elsbetiae_contig5524:4788..49371691683662.696757-CDS-L-elsbetiae_contig5524:4788..4937Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 4789..4937 -
1622816581.8724136-CDS-L-elsbetiae_contig5524:6113..61941622816581.8724136-CDS-L-elsbetiae_contig5524:6113..6194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 6114..6194 -
1691683662.7100694-CDS-L-elsbetiae_contig5524:6113..61941691683662.7100694-CDS-L-elsbetiae_contig5524:6113..6194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 6114..6194 -
1622816581.8856592-CDS-L-elsbetiae_contig5524:6827..69651622816581.8856592-CDS-L-elsbetiae_contig5524:6827..6965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 6828..6965 -
1691683662.722971-CDS-L-elsbetiae_contig5524:6827..69651691683662.722971-CDS-L-elsbetiae_contig5524:6827..6965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 6828..6965 -
1622816581.8990092-CDS-L-elsbetiae_contig5524:8265..84071622816581.8990092-CDS-L-elsbetiae_contig5524:8265..8407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 8266..8407 -
1691683662.733792-CDS-L-elsbetiae_contig5524:8265..84071691683662.733792-CDS-L-elsbetiae_contig5524:8265..8407Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 8266..8407 -
1622816581.9142141-CDS-L-elsbetiae_contig5524:8867..90021622816581.9142141-CDS-L-elsbetiae_contig5524:8867..9002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 8868..9002 -
1691683662.7438953-CDS-L-elsbetiae_contig5524:8867..90021691683662.7438953-CDS-L-elsbetiae_contig5524:8867..9002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 8868..9002 -
1622816581.9307642-CDS-L-elsbetiae_contig5524:9546..95721622816581.9307642-CDS-L-elsbetiae_contig5524:9546..9572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 9547..9572 -
1691683662.75257-CDS-L-elsbetiae_contig5524:9546..95721691683662.75257-CDS-L-elsbetiae_contig5524:9546..9572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 9547..9572 -
1622816581.9424028-CDS-L-elsbetiae_contig5524:11853..121411622816581.9424028-CDS-L-elsbetiae_contig5524:11853..12141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 11854..12141 -
1691683662.7625866-CDS-L-elsbetiae_contig5524:11853..121411691683662.7625866-CDS-L-elsbetiae_contig5524:11853..12141Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5524 11854..12141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5524.13812.1prot_L-elsbetiae_contig5524.13812.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5524 2667..12141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5524.13812.1

>prot_L-elsbetiae_contig5524.13812.1 ID=prot_L-elsbetiae_contig5524.13812.1|Name=mRNA_L-elsbetiae_contig5524.13812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=377bp
TPEDAGSGSKTATGSGGGETVKSETANKRATGDMADMLGVVVGGVGGVGV
AAARGAPGAAAEVMEVRDVDNCRLCCPECGFDLLKLDIVDVHTEEQAYEG
TPEQEQAYKTFERALKTSLEDARFGIGKTREMFEEPFKGSIGSGANRTAM
YGSVFEAAVDQMFRNSKLTSEHKFLDIGCGIASIVLQAAAWAGCQAAGIE
IVEDRFAGAVELHSAFKEAVFSEEEFRALMHPDVVSERVHLFKWEIPEVR
DADFIFFNNSSGWFNNSKALNNPDEHSLESRLLDKLKGDPTNNGKILITL
EHIAEWQPTCWERRSYKYSNNTRRAATYAAAELEFWEYKIVSQWECPGCT
SLNSDMVNDCVVCGTYCRGKRNSKRL*
back to top

mRNA from alignment at L-elsbetiae_contig5524:2667..12141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5524.13812.1 ID=mRNA_L-elsbetiae_contig5524.13812.1|Name=mRNA_L-elsbetiae_contig5524.13812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9475bp|location=Sequence derived from alignment at L-elsbetiae_contig5524:2667..12141- (Laminarionema elsbetiae ELsaHSoW15)
ACCCCAGAGGACGCAGGGTCGGGCTCGAAGACGGCCACAGGGTCGGGCGG
AGGCGAAACCGTCAAGAGTGAAACCGCCAACAAGCGGGCGACGGGCGACA
TGGCCGACATGCTGGGAGTGGTGGTTGGGGGCGTTGGGGGCGTCGGTGTG
GCGGCGGCGAGGGGGGCGCCGGGGGCGGCGGCGGAGGTGATGGAAGTCAG
GGACGTGGACAACTGCCGCCTGTGCTGCCCCGAGTGCGGGTTCGACCTGC
TCAAGCTGGACATCGTCGACGTGCATACCGAGGAGCAGGTGGGGGCCGAC
AGTTTCGCTCTCTTGTTGTCGACGGTTTCACGACGGTTTCACGACGGTTT
CATTTTGTTTTTAAGTTTACATCGTGGATGTGCATGCCGAGGAGCAGGTG
GGGACCGACGGTTCCGCTTTCTTGTTGTCGACGGTTTCACGACGGTTTCA
TTTTTGTTTCAAGAAGCAAAAGAAGGAAGGCGGCTGCACACAATGGCATG
GGACTGTTGACAGTTCGCTCTCTTGTTGTCGACAGTTTCATTTTTGTTTA
AGAAGAAAACTAGGCCAATATTACATCACTGCATGGAATTGTTAAGTCAC
CACACAGAGACCGCGTTTTCTTGTGTGGGAAGGTTCCTTCTTCGATTCTC
TGATTTATTTTCATAATATCAAGACGGGACTGTCAGCGGGACTGTCAAAA
GAACCGCGGTTTCTTGTGTGGGGAGATTCCTTCTTTGATTCTCTGTTTAA
TTTTCAAAAACTTTCTCCCCGGACTACATGTTGGTTGATCAGGCAGAACT
CTGCACGGAAGATGTTGAAGTCTCTGGACATTGTAGGTGTTTTTCTACTC
GGCCGAACCAATGTTACGTCACTATATATGGAGTACCGGTTGAACCCCGC
GGAGCCCCGTCTCGAGTGTGGGTCAGGTTGTCTGTTTGGTTGTCTGGTTT
ATCCTTCAAAAAGAAGAAGGCAGGCGGCTGCACACAATGGCATGGGACTT
TTCGTTGCGGTAGCCTTCCCAGGTGTTACTGTAAGAAATCGTGTGGGATA
AGGTATGGAAACGGCTAATGGGGGGTCGGTTTGGGGTGGGGGTAGGGTTA
CGGAACCCCTGTCTATTATTTCCTATATAGACAGGAATTATTCGCGAAGG
CAGTCGTTTCGTTGACGACGCTTCTTTCGTCCAAGGATGCCGTTGTTGTG
GTGATCATATTGCTGGTATTTTCGACTCCGGCGGTGCCTGTGCTTTTACC
TAGGTACATACATGCGTAGACACGACAACCTCCCCCCAGGAGGATTTTTT
TGGGTTGCACATCCCTGGACAGGCACGCGCCTGGGTAGGCAAGAAAAAAT
AAAGTCCTCATCACGTACGTACGTATGCGGCGAACTCGGTTAGTTGGGTG
TCTTACTGTTTCACGGGGTTCTGGTTGTAGGATTACCGGCGGCAAGATTT
TCAGCAGCACCCCGTACCAGCATGTGTCGTTTCAACCAGCCTTTTTTCCG
GTTCGGCTGAGGTCGCCGACCCTGGCCCTGGGGCTGAAAGAGAAAGAACA
AAGGGGCACCGCACCCTGCGTTGTTTCCCCAGGTGCAGGGGGCCGCCTTC
GCGAAGAGTTGTTGTCTAGATGTATAGGAAATAATAGACAGGGGTTCCGC
CCTAACCCTAACCCCAAACCTACCCCCCATTAGCCGTTTCCATACTTTAT
CCAGTATGATTTCTTACAAGTAAAGCCTGCGAAGGCCACTGGGTGCAGGA
GGCAGGCCTTTGTCGGCCTGTTTATGTATTTGGTCGTGTCGACGTGCCTA
GAACTCAACACTGAAGAATTGGGGGAAGAAATCTGTCTCGGGGTTGTTGG
GTACATTTGCCGGGCGCTATGTAGGCGTCTTCGTTGCCACCTGCTGTGTG
CGGACGTGAACTTGATTCCAGGCCAGAACATATCGAGAGACGGATGTATG
TAGGTTTTATGTAGGTATGCAGTTTACAGGAGGGAGCCAAGCGGCACCCA
TCCATGCATTTGCGTTGCCAGTTTTTGGGAAAGTTCGGCCGAGAGGTATT
TTTTACCTCCTTCCTCTCTTGTCTCTCGTCGGCGGGTCCCGCTCACGTAC
TACCCCTCCCCGTACCCCCCCTACTCTTCCCGTGTCTCGCCTGTAGTCTA
TTGCTGATCTTCAGAGAGATGATGGTTCGTGGGGTGTACTTCCCTTCTCT
TAGGGTCTGTGACAGCCTCGTTGCCCTCAAGGTCATCCTCGGGCTTAACC
CCCTGACGATGCCAACACTTTCCTATGTTTCCTCTCTTTGTGACTGATCC
CTCTAAAATGCCTATCGAATGGCCCTCATGGTCGTCCTCGGGCTTATTTA
TTTATTTATTTTTCTCCTCGCCAACATTCTGGGTCGGGATTATTGTATTG
TCCGCTGGCGGTGGACGGAAATCTCAAATGACCCCCCCCCCCGTGAACTG
CACTGCTGCTTTGTTTGGCCTTCGGACTTGTTCCTGCTTTGGCTGGGGCT
TCCTTTCCCGGCTGCCGCTGGTCTGTTCTGTAAACGCGAACGCGCGAATT
TTGGATCTTCAACCGGCAGGCGTACGAGGGGACCCCAGAACAAGAGTGAG
TTGTTTTTTGCTGCTGTCTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTG
CTGTTGTGGTTGTGATTGTTTTGTGGTGTGTTTTTGTTTGTGAGACTTAA
GCTCTATGTTTTTTTTTGTGTTTTTGTTCTCTCTCTCAAGTCGGCTGTTT
GTGGATCGCTTGTATGTAGATGTTCACTCTCGTTGTTGGTGGTTGTAAAA
TCTTACGCTTGAAGCTCGGTGATCGTGAGTATGCACTACCTACCTCTCTT
TGTTTTCTTCATGTTGCCAGTCCCATTGTTGTTGTTTTCGGCCACTGCTG
CTGTTGTTTGGTGCAGGCAAGCCCCTTCGAGCGGGCACTCGAGACGTCCC
TCGTAGACCTAAATGGCTCTGGTTGTACCTTCCACGCCAACGCTCACTCA
ACCAAGAACCAAGTTGTTTCTTGATATTAACTAGTAATTTAAGCACATGA
AATTGTTTTCGTTTTCATTTTTTTGTGTTTTTGCAAGACATGTCGCTTCT
CAACACAAATGGTTCTCCTCAACATTTTATTCGTCGCAGGCAAGCGTATA
AGACGTTCGAGAGGGCCCTGAAGACGTCACTGGAAGACGCTCGTTTCGGC
ATCGGAAAGACCAGAGAGATGTTCGAGGAACCCTTCAAGGGGTCCATCGG
CTCCGGGGCTAACCGCACGGCGATGTGAGACTTTTCGAGACTAAAACAGT
GATTCCAGATGCTGACTTCGAGGGAGCGAAAATGTGGCACACGCTACAGG
GAGGTGCTCGGTGGAGAGGTCGGAACGGTTTTTAATGTGAAGACAACAAC
AACAACAAACACAACACAACTCATGGTGAATCGGAACATACAAAGTTTCC
AGCTTGCGGCGAAGACCCAGTTCACACGGGGTGTTGGTACGCCTTGTTGT
CCTCTCTCGCGCTTGTGTTTAATCCGGATGAAAGCGCCAACCCATGATAA
AAAAAATAAAAAATGGTGAATCGGAACATAAATATATGTATGTACAGAGT
CTCCTTGCAGCGGCGCAGATGCAGTTCACTTTTTTCACACGGGGTTTTGG
TGGCCCGTTGTTGCCCTCTCTCGCTAATTTTGCCCCTCTGATGCCCGCCT
GTCGCTTGTTCTCAATGGGATTAATTCGGGGAAGGTATGGCTCCGTCTTC
GAGGCCGCAGTGGACCAGATGTTCCGCAACAGCAAGCTCACATCGGAGCA
CAAGTTCTTGGACATCGGCTGCGGCATAGCCTCCATCGTGCTGCAGGCGG
CGGCGTGGGCCGGCTGCCAGGCGGCGGTGAGATTGTTTTGCCTCTGATTT
TGTTCCTCCTCAAAAAATATCAGCAGTCTACATACACATACCCCCCCTCC
TGTGTGACTGACTGACCCCGGTTGGGTCGTCTAGCTACTTGTCAACTCAA
CCAACACACACATTTTGTACTCACCATATACTTACCATGACTGTGCGGTT
TAGTCGTGGTGGAGGAAGGGGGCCCGTGGAGCAGACGACGAAAAAGCCAA
TAATGGGAGGGAAAACAAGAGAGCATATATCCGCGCTCGAATTGGAGTAA
AGTATATTGTTCGTGGGGCAACCACTGCTGTAGGTATGTATCTATTTATC
CTCGCCCCGTCACCCCCGGCTACAACAGCAGTAGTACAGCACCCTCAGGC
CATACCGTAGTGTCCCTTGAGAACGCCCCGGGGTGTGTGTAAACATTTTT
CAAAGCCGGTTTTCTCCACAGCTGAGAGGGCACGAACCACAATATTTTAA
AGTTGGAAAGGTCTCGACCGGATCCTTTCAAGGATACATCGCTCGACGAC
AGGGACCCACCCATTGCGGAGAAAACGGGCTTTGGAAATTGAATTGTTTA
CACCCCGGGGGCGTTCTCAAGGGATATTACGTCATATGTGCGGTATGTAT
GTGTCCAGTCTTCGTTCTATCGTCGCCTCGTTGCCCCCGGCTACAACAAC
AGCACAGCGCCCGCAAGCCATATATGTAGGATATGTCTTCCAGTTGTAGC
CTTCGTTACTGTGTACCATACGGCATTTCGCATTGTAGGGGTATTTATTT
GATGGCGTGTCGTATTTCTTTTCACCTCCTGAGTACGTGGGGGTAGACGC
GGCGGGGATTTGTGCCGCAAAGACGGGCTTGCAGCTACATACACACGTAC
CAGTGCGTGTGCCTCTACCAAGACACGCCGTAATCTGAGTCCCAAGCGAC
CAAGCAGTATGTATGTACTTCGAAGTATGTAACATGGTATGCAACAATTC
TCAACACAGCATGACGATCAAATTTGATCGTCTTGTTGACGAATCGATGG
AGCGGCAGTTGGACACACTGTGCAACGAGAAAACATCTTCCGTACGTACA
AAGTATCATAGAAGTATGTATTTACAAAAATTAAAGTATACCCATACCTA
CAACATACATGTGTGACCCCGATTGGATCGTCTAGCTAGCCATAGTGGAG
GAAGGGGGCCAGTGGGGCAGACGACGAAAAAGCCAATAATGGGAGGGAAA
ACAAAAAGAAGGGCACCACGCAAACACTAAATGAAGGGTCTTGTATTTTT
GCATCTATGTATGTACGCTGGTGCAGGGCATCGAGATCGTGGAGGACCGA
TTCGCAGGGGCCGTGGAGTTGCACTCGGCCTTCAAGGAGGCGGTCTTCTC
AGAGGAGGAGTTCAGGGCCCTCATGCACCCAGACGTGGTGTCCGAGCGGG
TTCACCTTTTCAAGGTATGTGCCGTATACGACGCAAGATAACACACCCCC
TGGGCCGGTTTTCAAAGCTCAAGAGTAATATACTCCACAGCGAGAAGAAG
AGTTTTAGTCCCGAAAAGGGCGGCGTTGGAAATATCTCATCGAGACCTGC
CCGAAAACGTGGTCGGTTGGTACATATTAGAATCGTACTCGTTGCGGAGT
AACTGAGCTTTGGAAATCGGTCCAGGGGGTGTGTTGCATATCTTATGTCG
TATAATTACGGTATGCATGTAGTGCCATCAATCTATTCACCCTTGGCGCG
GGGTAATCGTTGTTGTTACTAAATTGTCTGATGGAGGCTCGAGCTGGTCC
CCCCGGTAGCGTACTATTGACGGAGCTATGTACAAGGTGTACCTGGTGGC
GGTACTGCTATGTATAAAGCAGGCAAGTTCCACTTTTCGAAATGTTTCTG
CTGAGCGACAGCCGTCGTATCCACTTCCACAACCCGTGACCATTTTGTAA
AAAGCGCATGTACAGTTCATTTTTTTTTCACGTTTTGAGACGATGTTTTT
GTTTTTCTACGCTGGCTTCGTTTTTTTTCTCGTCGTCTTTTTTCTCTTGT
TCGTTTTTTTTTTTTTTCGTGGTGCGAAGGGCTGCTTCTTGGCGCAGTGG
GAAATCCCAGAGGTCCGGGACGCAGACTTCATTTTCTTCAACAACAGCAG
CGGCTGGTTCAACAACAGCAAGGCGCTGGTACGTTTGTTCGGGCCTGCAA
CGTGTTTTTTGGCATCACGGCAGGGTATGACAACAAAAAAGCGTGATTTT
TGGCTTCACGGCAGGGGATGACAAAAAAAGAACTCGTGAACGTGTAAACA
GGATCGCCATACGTTTTTTTCCCCGTAAAATGTGTGGGTGGAGGCTGTAA
ATTGCCTCAAACGCCGACATAAGTCTACGGTTTATTTTCCTGCGTTTTGT
TTGCCGCGTGGACAAAAAGTGTTTGCTGATCTTCAATATGTCCTTTACAC
TTTTTCCCCATTCTACATACGTTTGTGTTAACGTAGAAAAAAAAAGGGTT
CCGACGAAATCTCAGTGTTCCAGAACTCTTGATTTATTTGTCAAATAAGA
GCGATCGCGATCATTGGTGCTCTGTCACCCTTTGGTGTCGGTAGATGGCG
TCATCTTAACAAGATTTAAACGGAAGAGGGCTCTGCCTAGAAAACAAAAT
CCAACCACCTCAGCTAGGTCAGACATTTTTTTTTCTCTCCTGCACAGAGG
ATATACACCGAAACGTGTGCAATATATTGTACAGTAATATATTGTAGTGC
AATACACCGAAACGTGTTTGTAGCACACCTGCACAAGGCGGACAGACGCC
AGAATAGATGGGACGAAAACACACACACACAGAACCGTTTATTTCCACGC
GCTCGTGGAAACATGGCCAGCTCCGCTCTGCAAATTAGCCTCATCTAATG
TCACGCATGATGTGTTACTGCATATCGTGTCGCTTGCCATCCGACGATTG
CAGCTTCAGTCAAAATCACACGCATATATGTATGTACGCACTTCACCATA
CTTGTTCCGTACGATCCGTACATGTATGTACCAATAAAATACAACTTGGA
CATACATATACAAGAGTACAATGTACAATGTCGTGCCGTATTATGGTTGA
CCTGGCAGAGTAGTGCGGGGAAGGTATTGGTGCCCTCTGACATTGTAGAT
GGTTTTGTGCTCGGCCGGGCCAGTATTGCATCACTACATATATCATATAT
ATACATGGAATATTGGTTAAATCCCACAGAGTCCACGGGGTCCGTCTTGA
AGTGTGGGGAAGGTCCCATTCATTTTTGGTTTGACTGATTTTATTATCTC
AAGAGTCAAGTAAATGCATGTGATAAAAAAAAAAATCAAATCTGTTTTTG
CCAGAACAACCCTGACGAGCACTCCCTGGAGTCGAGGCTGCTGGACAAGC
TCAAGGGCGACCCGACTAACAACGGCAAGATCCTCATCACCCTCGAGCAC
ATCGCGGAGTGGCAGCCCACCTGCTGGGAGCGCCGCAGCTACAAGTACAG
CAAGTGCGTGGAGCGAGCGTGATTGGCTGGTGGCCGGGTCGCCTGTACAT
ATCTATTGTCCGCTTGCCTGGGTTTTTGGTTCACCGGCGCCGGCCTTCCC
ATGGGTGGTATTAGTAGCCCCCCCCCCCGAATTATAAGCTCATTTTCAGA
GAAAATCATAAGCTCGAGCATAAGTAATATTTTTCGTCAACTTACCGTAT
GCTCAATCAGCCCTTGCTCGGAAAGCTTGGTCGTGCTCACGCTTATGCCC
CAAAAGGATGTTGTAAGCGCCATAGAAGTGTTCAGATTTACGAGCTTTAT
GTTGGTATTTTCACAAGCTCAAAAAGGCCATTAGTCTATGCTAGAAACAA
ATGCGAGCTTACAGTATTGGGCAAAGGCCTACAAAGTATATTTTTTTTGT
GTGTTTTGGTACAACTGTTGTTCGTGCGCGTGTAAATGTGTGAGTATCGT
TGTGCGTTCTCACTTCGCTGCCTTCCTTGAAGGCTGATGCATGATTCTTA
CAAGGCTTGGAATCTATTTTCATGCATACAGTACCCTGCCAACCCCCATG
GCTTATCCACGTCAGGGTGTGTGTGCTATTTTAGCTCAACCCACGGAGCC
TGGTACCCCTACAGCAGTAGCAGTAGTTCCCCATGCGACATGCGAGTACT
GACAACGCACGGGCTCGACACCTTTCCATGGCGGTAGATCGTCGTTGCAA
GGACAACCAAGCATCGCATTTTTTTTTCACTCTTGTGTGGATTGTTTTCG
ACCCCGCTTGCTTTTTTTGTGTCTTGGCCCTGTTTCTGCAGCAACACGAG
GAGAGCGGCGACCTACGCCGCCGCCGAGCTGGAGTTCTGGGAGTACAAGG
TAATCCCCTCATCCATTTACGCAAATGCTGACAAATGTTTTTTTTTCCAT
GCAGTACTTCGCCGTGTTTGTGTTAAAACCCGTGCGATATTGTATCAACT
CAGAGGGTTGGGTCGGATAACACTACATTACATGTGGCGGCGCTGGTCAC
GGTGCAACACGTTTCGGGCACAAAAGTGTCAGCCTGCGCTGCCGTTTTGT
ATCGCAACCTGCGACCAGTGAAATGGCCAGTGTGAGGCGTCTTGCAACCG
CGGCTTGTGGTCGATTACAGAGTGTGCTGTGTCACTTCATGCGAGAGTGA
CGTGTGTTGGATTTTCTATTTCGGCCGTTGCCAAAGACCGTCGATGCTGA
TCTATTCCGTGTGTGTGTTTGTGTGCCAATGTAAGATATTTACATTATGC
TCTCTTTATGCATGCAGTGCTTTTTCGGCGGCCCTATGACTGCTGACCAT
GTAGGCTGTAGATGGTGTCTCAACCGAAGTACAGTACCGGACCTCTGATG
AGAAACCTGAAATCGGGCTTGGGCTGGCTTTCTTCAGTTGGATTGGAAGT
CGATCATAGCACTTTCTTTTGTAACGTAAAATATTTAGTGAGGCGCTCGC
CGCCCAGGCTGGACACCTTATTTCTTAATAATTTTAAAATCTCAGGCTAG
GTTTCTTACTCGGAGCTTTCATACTAGCGGGCCGGTACTGTAGCCAAGAG
CCCACTGGAAGCACCACATCTGAGTGGCAACGAAGTACGGCCCCCCTCAG
GAATGAATGATGTACCCTCGAGGGCGGGAGGTGTTGAACCCGTGCCGCTG
TTCCCTGGGTAATTGATCCAGGGGGGCGCTACGTACTTTTGGACCCCCGC
GGGGTGTGCACAACCTAAGCAGTACACGGTAGACCGAGTTCACCATTTAC
TCATGCGAGCGTTTCTGTTGTATTTGGGTTGTTGTGTGCACCCGCCCTCT
GCTGCCGTAGCTACCGCTGCAGTTTTCACTGTGTATGCAAGCCTCTAAGA
AGGAACACAGGACAACCAAATATGACTTCCAAAGAAATTGAACCAACCCA
CACTTTTGGATTTTGCCATGATGCGCAGCTCGTCCGCCAGTAAGTATCGC
GTCCCCTATGGAAGTGAACCCACCCACACTTTTGGACTTGGTCGTATTTA
TATTTGCGCAGATCGTCAGCCAGTGGGAGTGCCCGGGGTGCACCTCTCTC
AACTCGGACATGGTGAATGACTGCGTCGTCTGCGGGACCTACTGCCGTGG
CAAGCGCAACTCTAAGCGCCTCTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5524:2667..12141-

>mRNA_L-elsbetiae_contig5524.13812.1 ID=mRNA_L-elsbetiae_contig5524.13812.1|Name=mRNA_L-elsbetiae_contig5524.13812.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2262bp|location=Sequence derived from alignment at L-elsbetiae_contig5524:2667..12141- (Laminarionema elsbetiae ELsaHSoW15)
ACCCCAGAGGACGCAGGGTCGGGCTCGAAGACGGCCACAGGGTCGGGCGG
AGGCGAAACCGTCAAGAGTGAAACCGCCAACAAGCGGGCGACGGGCGACA
TGGCCGACATGCTGGGAGTGGTGGTTGGGGGCGTTGGGGGCGTCGGTGTG
GCGGCGGCGAGGGGGGCGCCGGGGGCGGCGGCGGAGGTGATGGAAGTCAG
GGACGTGGACAACTGCCGCCTGTGCTGCCCCGAGTGCGGGTTCGACCTGC
TCAAGCTGGACATCGTCGACGTGCATACCGAGGAGCAGACCCCAGAGGAC
GCAGGGTCGGGCTCGAAGACGGCCACAGGGTCGGGCGGAGGCGAAACCGT
CAAGAGTGAAACCGCCAACAAGCGGGCGACGGGCGACATGGCCGACATGC
TGGGAGTGGTGGTTGGGGGCGTTGGGGGCGTCGGTGTGGCGGCGGCGAGG
GGGGCGCCGGGGGCGGCGGCGGAGGTGATGGAAGTCAGGGACGTGGACAA
CTGCCGCCTGTGCTGCCCCGAGTGCGGGTTCGACCTGCTCAAGCTGGACA
TCGTCGACGTGCATACCGAGGAGCAGGCGTACGAGGGGACCCCAGAACAA
GAGCGTACGAGGGGACCCCAGAACAAGAGCAAGCGTATAAGACGTTCGAG
AGGGCCCTGAAGACGTCACTGGAAGACGCTCGTTTCGGCATCGGAAAGAC
CAGAGAGATGTTCGAGGAACCCTTCAAGGGGTCCATCGGCTCCGGGGCTA
ACCGCACGGCGATGCAAGCGTATAAGACGTTCGAGAGGGCCCTGAAGACG
TCACTGGAAGACGCTCGTTTCGGCATCGGAAAGACCAGAGAGATGTTCGA
GGAACCCTTCAAGGGGTCCATCGGCTCCGGGGCTAACCGCACGGCGATGT
ATGGCTCCGTCTTCGAGGCCGCAGTGGACCAGATGTTCCGCAACAGCAAG
CTCACATCGGAGCACAAGTTCTTGGACATCGGCTGCGGCATAGCCTCCAT
CGTGCTGCAGGCGGCGGCGTGGGCCGGCTGCCAGGCGGCGGTATGGCTCC
GTCTTCGAGGCCGCAGTGGACCAGATGTTCCGCAACAGCAAGCTCACATC
GGAGCACAAGTTCTTGGACATCGGCTGCGGCATAGCCTCCATCGTGCTGC
AGGCGGCGGCGTGGGCCGGCTGCCAGGCGGCGGGCATCGAGATCGTGGAG
GACCGATTCGCAGGGGCCGTGGAGTTGCACTCGGCCTTCAAGGAGGCGGT
CTTCTCAGAGGAGGAGTTCAGGGCCCTCATGCACCCAGACGTGGTGTCCG
AGCGGGTTCACCTTTTCAAGGGCATCGAGATCGTGGAGGACCGATTCGCA
GGGGCCGTGGAGTTGCACTCGGCCTTCAAGGAGGCGGTCTTCTCAGAGGA
GGAGTTCAGGGCCCTCATGCACCCAGACGTGGTGTCCGAGCGGGTTCACC
TTTTCAAGTGGGAAATCCCAGAGGTCCGGGACGCAGACTTCATTTTCTTC
AACAACAGCAGCGGCTGGTTCAACAACAGCAAGGCGCTGTGGGAAATCCC
AGAGGTCCGGGACGCAGACTTCATTTTCTTCAACAACAGCAGCGGCTGGT
TCAACAACAGCAAGGCGCTGAACAACCCTGACGAGCACTCCCTGGAGTCG
AGGCTGCTGGACAAGCTCAAGGGCGACCCGACTAACAACGGCAAGATCCT
CATCACCCTCGAGCACATCGCGGAGTGGCAGCCCACCTGCTGGGAGCGCC
GCAGCTACAAGTACAGCAAAACAACCCTGACGAGCACTCCCTGGAGTCGA
GGCTGCTGGACAAGCTCAAGGGCGACCCGACTAACAACGGCAAGATCCTC
ATCACCCTCGAGCACATCGCGGAGTGGCAGCCCACCTGCTGGGAGCGCCG
CAGCTACAAGTACAGCAACAACACGAGGAGAGCGGCGACCTACGCCGCCG
CCGAGCTGGAGTTCTGGGAGTACAAGCAACACGAGGAGAGCGGCGACCTA
CGCCGCCGCCGAGCTGGAGTTCTGGGAGTACAAGATCGTCAGCCAGTGGG
AGTGCCCGGGGTGCACCTCTCTCAACTCGGACATGGTGAATGACTGCGTC
GTCTGCGGGACCTACTGCCGTGGCAAGCGCAACTCTAAGCGCCTCTAAAT
CGTCAGCCAGTGGGAGTGCCCGGGGTGCACCTCTCTCAACTCGGACATGG
TGAATGACTGCGTCGTCTGCGGGACCTACTGCCGTGGCAAGCGCAACTCT
AAGCGCCTCTAA
back to top