mRNA_L-elsbetiae_contig5523.13811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5523.13811.1
Unique NamemRNA_L-elsbetiae_contig5523.13811.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5523.13811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5523contigL-elsbetiae_contig5523:2750..4582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5523.13811.1prot_L-elsbetiae_contig5523.13811.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5523 2750..4469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.7740626-CDS-L-elsbetiae_contig5523:2749..29471622816581.7740626-CDS-L-elsbetiae_contig5523:2749..2947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5523 2750..2947 -
1691683662.6260812-CDS-L-elsbetiae_contig5523:2749..29471691683662.6260812-CDS-L-elsbetiae_contig5523:2749..2947Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5523 2750..2947 -
1622816581.7876828-CDS-L-elsbetiae_contig5523:4466..44691622816581.7876828-CDS-L-elsbetiae_contig5523:4466..4469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5523 4467..4469 -
1691683662.6409595-CDS-L-elsbetiae_contig5523:4466..44691691683662.6409595-CDS-L-elsbetiae_contig5523:4466..4469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5523 4467..4469 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.8049152-UTR-L-elsbetiae_contig5523:4469..45821622816581.8049152-UTR-L-elsbetiae_contig5523:4469..4582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5523 4470..4582 -
1691683662.6572056-UTR-L-elsbetiae_contig5523:4469..45821691683662.6572056-UTR-L-elsbetiae_contig5523:4469..4582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5523 4470..4582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5523.13811.1

>prot_L-elsbetiae_contig5523.13811.1 ID=prot_L-elsbetiae_contig5523.13811.1|Name=mRNA_L-elsbetiae_contig5523.13811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MEKKLGMTAPPIGHPVAAAASPSLTGDAGSRLVNPPCVSSRDTGAARGGS
DASGSGGSGGGGKRRTR
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mRNA from alignment at L-elsbetiae_contig5523:2750..4582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5523.13811.1 ID=mRNA_L-elsbetiae_contig5523.13811.1|Name=mRNA_L-elsbetiae_contig5523.13811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1833bp|location=Sequence derived from alignment at L-elsbetiae_contig5523:2750..4582- (Laminarionema elsbetiae ELsaHSoW15)
GGGTATAGCAGTGATTGGACTGGGGCAGCGAGCTGACACCTGGGGCAGCG
GGCTGACACCAGGGGCAGCGGGCAGGATATAGGTTTGGCGTGTGACCTTC
CTCTTCGCCGGGCATGGTAAGTGAACATGTCTACATCTAGATAACAAGCA
GGATGTGTTCTGTACGTAATCTGCGCATGCATACACAAGTCGTTAGGAAA
AAGGGCTCGTTACTGCCTACCATAAAACGGGACGAATCTGCGAGTGCGTG
TTGCCACGCATGCCCTGAGTCGAACTCGAGCTAATTTGTCGCTGTACACC
GTGGACAGTTGCATACGCGCCGACTACATACACATTTTTCCTGCACCCGA
GGGTGCAGCAATCGCATGCACATCTATGCATTTTAGTCAACCCTCAGCTG
CTGGTGCCGACGTGCTCGCGGAAACGGTAATGCTTCTGATGCACATGGTC
TTTGTATGGAAGCATATCTACTATACCTGGGGCTTCTCGGCCACGGCATG
CCAGCATGCAGGGTGCAAGCTAAACGCACTGCTGTGTCGCATGCCCGAGA
GAGATTTAGCCCCTGTTCACGTGATTCGATTTCTTGCGGCCGATGACTCG
CCGTTGGTTCCGTCAGAGCGGGAGATCGGTGCAATCGTGGGGTTTGCGTG
CGGTTGTATGCCTCTCGAATACATGCCGCCCGCTACACATAGTCTACATG
TGCACCTTCTTCACCCTCTCTCTAAGGATGCCGGGGCACTGAGAGCGCCA
CCACAGCGGCACAGCCCCGGAATCCCACGTGTGGTCGGCGGCAGCCCCCG
CCAAAGCATTGTTTCCCAAGCCCACACGCCAGCCTTTTGCAAACGCAAAT
ATGGATATCTAGAGACCGCCTTTTTTTTCTGCTTCGTTCGGTATGTCACG
GAATGTTGTCTACATGGTCTACGTAGCAGCGGCGGACTAAGACGAAACGT
TTTGTCTGGTGGCTGTCCGGAGAAGTAGCTCGGAGGGACTCCAAGAACGA
GCTCCCCCGGAGCGTAGGGTTGTTGGCCCCGGCAGCAGTAAGTGTAGTAC
TGGAAAGGGACAAGCGAAGGTCACCCCTTTCCCTGCCACTCAGCCTTTAG
TTTGGTGCAGTATGGGCAATGCGCGTGTATTTAGGGATGCAACAGGGGCC
GGGGCCGGGGAAAAGCTTTCCTGCGCCCTTTTTTCCCTGCAAGTCCTTCC
AACCAATCTGTGTATCTAAATGGCACCCGTTTTCTTGGCAACCATGAAAG
CGCTACGTCCCGTGGCAGAGAACCAGGGCGTCCGAGCTGAAAACCCTTGC
TGGAACCAACTCACAAACGCGTCTGTCTCTGGGGCATACGCTGGGCAGAG
CATGAAGGCTCTAGGCGTCGTCCCCGAACGACGAGAATCGCTTCACCCTG
CGGAGGGCACGCACCCGCCTCTCCCCTTCGCTTTGTTATCGCTCGTCCGT
CCGCTACGCTGTTCTGGCTCTGCCCGGCTCTCGCCGCCCTCCCCCGTTGC
CATCACGCTTTGGCTCCCTTCTCCCCCCCCCCCTCCGCCTTCTCGCTATC
CTGCGTTCAACAAGAACCTCGAGCATGAATAAACACAATCACTTTCCGCC
TTACTCTCGCGCACAATGTCGAACCCGCCCGCCAGGAAAAAAAGCTGGGG
ATGACAGCACCTCCAATAGGGCATCCGGTCGCCGCGGCCGCCTCCCCATC
CCTCACAGGCGACGCCGGCAGCCGGCTTGTTAACCCCCCATGCGTTTCCA
GTCGGGACACGGGGGCGGCTCGTGGTGGAAGTGACGCCAGCGGCAGTGGT
GGCTCCGGCGGCGGCGGAAAGAGAAGAACCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5523:2750..4582-

>mRNA_L-elsbetiae_contig5523.13811.1 ID=mRNA_L-elsbetiae_contig5523.13811.1|Name=mRNA_L-elsbetiae_contig5523.13811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig5523:2750..4582- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGAAAAAAAGCTGGGGATGACAGCACCTCCAATAGGGCATCCGGT
CGCCGCGGCCGCCTCCCCATCCCTCACAGGCGACGCCGGCAGCCGGCTTG
TTAACCCCCCATGCGTTTCCAGTCGGGACACGGGGGCGGCTCGTGGTGGA
AGTGACGCCAGCGGCAGTGGTGGCTCCGGCGGCGGCGGAAAGAGAAGAAC
CCGAGAAAAAAAGCTGGGGATGACAGCACCTCCAATAGGGCATCCGGTCG
CCGCGGCCGCCTCCCCATCCCTCACAGGCGACGCCGGCAGCCGGCTTGTT
AACCCCCCATGCGTTTCCAGTCGGGACACGGGGGCGGCTCGTGGTGGAAG
TGACGCCAGCGGCAGTGGTGGCTCCGGCGGCGGCGGAAAGAGAAGAACCC
GA
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