mRNA_L-elsbetiae_contig5516.13803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5516.13803.1
Unique NamemRNA_L-elsbetiae_contig5516.13803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5516.13803.1 vs. uniprot
Match: D7G685_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G685_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.960e-39
Identity = 124/372 (33.33%), Postives = 201/372 (54.03%), Query Frame = 1 
Query:    7 KSNPMIWGFIRRIPAQETIRLVPDSFSEDLKKFIKLPGSLMDMLGFYHLKKEKVLGPDVAEAGIFGANKVIRGGSNAEGFIFDLAKSLQEASKLGRFINLQSVTAPLTAGREYKSLLENVENGREELMLEKKDLFKWA---DKGATTWATKAL---LCLGASFIPSIPLGSIRIMSRDSKLNDNTKGAYFSHMQVLESVRQQSM---PDGDTRDLDVFKKISTHFHPTTVLVRRNVEKAKQLDGQFGNSSKVEQGKMPSDLWGGQKLVKRMVEKLLDEAYELFVNKVKPAERALSIRILEEEGEKHAGTRENEDHINTEEVKSVARRLIDEENVTCDEASELTKMVFLVENFTSPPIRMKNKRGLQACHTFI 1095
            K  PMIW  +R I  QET+R+VPD   E L+ F    GS+++MLG    +  +    +    GIFG+    R  S A   I  L ++L +A +L R + LQS   PLT  +E +++  NV+ G+E L    +D  K +   D  A T  TKAL   L +  ++IP +PL  +R ++R+ +L   +    +S  +VL  +R++S+   PD D  D  VF K+ T+F     +VR   E      GQ G   K +QG++ +  W     V  MV  L+ +  +  +  V   +  L   +L++EG+ + GTRENE+H+ T E+K+ A+RL D+  VTC++ S  +  ++++++FTS  IR ++K  + A +TF+
Sbjct:  143 KIRPMIWRVLRVISVQETLRVVPDE--ETLEGFTTREGSMLEMLGLKRFEDTEYSFHN-GSMGIFGSKLYFRDKSIATELISTLVQTLLQAFRLNRPVCLQSAVYPLTL-KELEAVAANVKFGKEAL----EDRAKHSQDTDTEAPTTKTKALEALLAVDGNWIPDLPLSILRTLNREGELLPTSLDGVYSKTRVLFKLRERSVYMVPDNDDGDKPVFDKVLTYFRLVANIVRNEKEIYVNNQGQIGPGRKYQQGRLANP-WTLAPHVDFMVMSLIKDRLKPIMELV-GEDVDLCWEVLKKEGQ-NPGTRENENHLFTPEIKAAAQRLKDK-GVTCEDISLFSAALYIIDSFTSACIRKQDKTEMWAMNTFV 502
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5516.13803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G685_ECTSI6.960e-3933.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5516contigL-elsbetiae_contig5516:8424..10078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001330.1
Exons2
Model size1557
Cds size1539
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5516.13803.1prot_L-elsbetiae_contig5516.13803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5516 8424..10060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.0034678-CDS-L-elsbetiae_contig5516:8423..91431622816581.0034678-CDS-L-elsbetiae_contig5516:8423..9143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5516 8424..9143 -
1691683662.0964572-CDS-L-elsbetiae_contig5516:8423..91431691683662.0964572-CDS-L-elsbetiae_contig5516:8423..9143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5516 8424..9143 -
1622816581.0138657-CDS-L-elsbetiae_contig5516:9241..100601622816581.0138657-CDS-L-elsbetiae_contig5516:9241..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5516 9242..10060 -
1691683662.1063592-CDS-L-elsbetiae_contig5516:9241..100601691683662.1063592-CDS-L-elsbetiae_contig5516:9241..10060Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5516 9242..10060 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816581.0265813-UTR-L-elsbetiae_contig5516:10060..100781622816581.0265813-UTR-L-elsbetiae_contig5516:10060..10078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5516 10061..10078 -
1691683662.1152668-UTR-L-elsbetiae_contig5516:10060..100781691683662.1152668-UTR-L-elsbetiae_contig5516:10060..10078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5516 10061..10078 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5516.13803.1

>prot_L-elsbetiae_contig5516.13803.1 ID=prot_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=513bp
MIWGFIRRIPAQETIRLVPDSFSEDLKKFIKLPGSLMDMLGFYHLKKEKV
LGPDVAEAGIFGANKVIRGGSNAEGFIFDLAKSLQEASKLGRFINLQSVT
APLTAGREYKSLLENVENGREELMLEKKDLFKWADKGATTWATKALLCLG
ASFIPSIPLGSIRIMSRDSKLNDNTKGAYFSHMQVLESVRQQSMPDGDTR
DLDVFKKISTHFHPTTVLVRRNVEKAKQLDGQFGNSSKVEQGKMPSDLWG
GQKLVKRMVEKLLDEAYELFVNKVKPAERALSIRILEEEGEKHAGTRENE
DHINTEEVKSVARRLIDEENVTCDEASELTKMVFLVENFTSPPIRMKNKR
GLQACHTFIHPTDGLLKDIITNRIKDDDALARTGVLVLTHRKHEMIKEVY
AVMVVLGRAVFRLHGCVLDKGICPLDSLGHELNDGNRTQLLKSAGMWFLG
LSDFTEHITRTFQLTLLIDKCIKLGRAPEQCPVVKQALREMHTTMNIAMT
HYNIRKNERVAWG
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mRNA from alignment at L-elsbetiae_contig5516:8424..10078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5516.13803.1 ID=mRNA_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1655bp|location=Sequence derived from alignment at L-elsbetiae_contig5516:8424..10078- (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGAAGTCCAACCCTATGATTTGGGGATTTATCAGGAGAATTCCTGC
TCAAGAAACGATTCGTTTAGTGCCGGACTCTTTCAGCGAGGATCTGAAGA
AGTTTATCAAGCTACCGGGTTCCCTTATGGATATGCTCGGCTTCTACCAC
TTGAAGAAGGAGAAGGTCCTCGGGCCGGACGTCGCCGAAGCAGGGATCTT
CGGGGCGAACAAGGTGATCAGGGGTGGGTCAAACGCGGAGGGATTTATCT
TTGATCTCGCGAAATCCCTTCAAGAAGCCTCTAAACTGGGTAGGTTCATC
AACCTCCAGTCCGTCACTGCTCCGCTCACAGCGGGTCGCGAGTACAAGAG
TCTTCTTGAAAATGTGGAGAACGGCAGAGAGGAGCTGATGTTGGAGAAGA
AAGATCTATTCAAGTGGGCAGACAAAGGTGCGACGACATGGGCAACGAAG
GCCCTCCTCTGTTTGGGAGCTTCCTTCATCCCGAGCATCCCTCTTGGTAG
CATTAGGATCATGTCCCGCGACAGCAAGCTGAACGACAACACTAAAGGAG
CCTACTTCTCGCACATGCAAGTTTTGGAATCCGTGCGACAGCAGTCCATG
CCCGACGGGGATACCAGAGACCTCGATGTGTTCAAGAAGATTTCGACCCA
CTTCCACCCGACGACGGTGTTGGTGAGAAGAAATGTTGAAAAAGCAAAAC
AACTGGACGGACAATTCGGGAACTCCAGCAAGGTTGAACAAGGAAAAATG
CCTTCGGATTTGTGGGGAGGTCAGAAGCTTGTTAAGCGGATGGTGGAAAA
GCTCCTGGATGAGGCATATGAGCTGTTCGTGAACAAGGTGTGTGTGCATT
CGTTTGCAGTCGAAGGAAAGGGAGTAGGCATGATCGTGTTATTTTTATGT
TTTAACTCAACGCACTTGTGCACTTGCCCGAACAGGTGAAACCTGCAGAG
CGCGCCTTGTCCATAAGGATCTTGGAGGAAGAGGGTGAAAAACATGCCGG
AACTAGGGAGAACGAGGACCACATCAACACGGAGGAAGTCAAATCTGTAG
CGCGGAGACTCATTGACGAGGAAAATGTCACTTGCGACGAAGCTAGTGAG
TTGACTAAGATGGTGTTCTTGGTCGAGAACTTCACGTCGCCGCCCATCAG
GATGAAGAACAAAAGGGGGCTACAGGCGTGTCACACCTTCATCCACCCTA
CAGACGGTCTACTGAAAGACATCATCACCAACAGAATCAAAGATGACGAC
GCTCTGGCGAGGACCGGGGTTTTGGTGTTGACACACAGGAAGCACGAGAT
GATCAAGGAGGTCTATGCTGTTATGGTCGTGCTCGGCCGCGCCGTGTTCC
GTCTACATGGGTGCGTACTCGACAAGGGCATCTGCCCTCTAGACTCTTTG
GGTCACGAACTTAACGACGGCAACCGGACTCAGCTTCTGAAAAGCGCCGG
GATGTGGTTCCTCGGCCTCTCCGACTTTACTGAACACATCACCAGGACCT
TCCAGCTCACACTGCTCATCGACAAATGTATCAAACTCGGGCGCGCCCCC
GAGCAGTGCCCAGTGGTGAAGCAAGCGTTAAGGGAGATGCATACGACTAT
GAACATTGCTATGACCCACTACAACATCAGGAAGAACGAGAGAGTCGCGT
GGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5516:8424..10078-

>mRNA_L-elsbetiae_contig5516.13803.1 ID=mRNA_L-elsbetiae_contig5516.13803.1|Name=mRNA_L-elsbetiae_contig5516.13803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3078bp|location=Sequence derived from alignment at L-elsbetiae_contig5516:8424..10078- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTGGGGATTTATCAGGAGAATTCCTGCTCAAGAAACGATTCGTTT
AGTGCCGGACTCTTTCAGCGAGGATCTGAAGAAGTTTATCAAGCTACCGG
GTTCCCTTATGGATATGCTCGGCTTCTACCACTTGAAGAAGGAGAAGGTC
CTCGGGCCGGACGTCGCCGAAGCAGGGATCTTCGGGGCGAACAAGGTGAT
CAGGGGTGGGTCAAACGCGGAGGGATTTATCTTTGATCTCGCGAAATCCC
TTCAAGAAGCCTCTAAACTGGGTAGGTTCATCAACCTCCAGTCCGTCACT
GCTCCGCTCACAGCGGGTCGCGAGTACAAGAGTCTTCTTGAAAATGTGGA
GAACGGCAGAGAGGAGCTGATGTTGGAGAAGAAAGATCTATTCAAGTGGG
CAGACAAAGGTGCGACGACATGGGCAACGAAGGCCCTCCTCTGTTTGGGA
GCTTCCTTCATCCCGAGCATCCCTCTTGGTAGCATTAGGATCATGTCCCG
CGACAGCAAGCTGAACGACAACACTAAAGGAGCCTACTTCTCGCACATGC
AAGTTTTGGAATCCGTGCGACAGCAGTCCATGCCCGACGGGGATACCAGA
GACCTCGATGTGTTCAAGAAGATTTCGACCCACTTCCACCCGACGACGGT
GTTGGTGAGAAGAAATGTTGAAAAAGCAAAACAACTGGACGGACAATTCG
GGAACTCCAGCAAGGTTGAACAAGGAAAAATGCCTTCGGATTTGTGGGGA
GGTCAGAAGCTTGTTAAGCGGATGGTGGAAAAGCTCCTGGATGAGGCATA
TGAGCTGTTCGTGAACAAGATGATTTGGGGATTTATCAGGAGAATTCCTG
CTCAAGAAACGATTCGTTTAGTGCCGGACTCTTTCAGCGAGGATCTGAAG
AAGTTTATCAAGCTACCGGGTTCCCTTATGGATATGCTCGGCTTCTACCA
CTTGAAGAAGGAGAAGGTCCTCGGGCCGGACGTCGCCGAAGCAGGGATCT
TCGGGGCGAACAAGGTGATCAGGGGTGGGTCAAACGCGGAGGGATTTATC
TTTGATCTCGCGAAATCCCTTCAAGAAGCCTCTAAACTGGGTAGGTTCAT
CAACCTCCAGTCCGTCACTGCTCCGCTCACAGCGGGTCGCGAGTACAAGA
GTCTTCTTGAAAATGTGGAGAACGGCAGAGAGGAGCTGATGTTGGAGAAG
AAAGATCTATTCAAGTGGGCAGACAAAGGTGCGACGACATGGGCAACGAA
GGCCCTCCTCTGTTTGGGAGCTTCCTTCATCCCGAGCATCCCTCTTGGTA
GCATTAGGATCATGTCCCGCGACAGCAAGCTGAACGACAACACTAAAGGA
GCCTACTTCTCGCACATGCAAGTTTTGGAATCCGTGCGACAGCAGTCCAT
GCCCGACGGGGATACCAGAGACCTCGATGTGTTCAAGAAGATTTCGACCC
ACTTCCACCCGACGACGGTGTTGGTGAGAAGAAATGTTGAAAAAGCAAAA
CAACTGGACGGACAATTCGGGAACTCCAGCAAGGTTGAACAAGGAAAAAT
GCCTTCGGATTTGTGGGGAGGTCAGAAGCTTGTTAAGCGGATGGTGGAAA
AGCTCCTGGATGAGGCATATGAGCTGTTCGTGAACAAGGTGAAACCTGCA
GAGCGCGCCTTGTCCATAAGGATCTTGGAGGAAGAGGGTGAAAAACATGC
CGGAACTAGGGAGAACGAGGACCACATCAACACGGAGGAAGTCAAATCTG
TAGCGCGGAGACTCATTGACGAGGAAAATGTCACTTGCGACGAAGCTAGT
GAGTTGACTAAGATGGTGTTCTTGGTCGAGAACTTCACGTCGCCGCCCAT
CAGGATGAAGAACAAAAGGGGGCTACAGGCGTGTCACACCTTCATCCACC
CTACAGACGGTCTACTGAAAGACATCATCACCAACAGAATCAAAGATGAC
GACGCTCTGGCGAGGACCGGGGTTTTGGTGTTGACACACAGGAAGCACGA
GATGATCAAGGAGGTCTATGCTGTTATGGTCGTGCTCGGCCGCGCCGTGT
TCCGTCTACATGGGTGCGTACTCGACAAGGGCATCTGCCCTCTAGACTCT
TTGGGTCACGAACTTAACGACGGCAACCGGACTCAGCTTCTGAAAAGCGC
CGGGATGTGGTTCCTCGGCCTCTCCGACTTTACTGAACACATCACCAGGA
CCTTCCAGCTCACACTGCTCATCGACAAATGTATCAAACTCGGGCGCGCC
CCCGAGCAGTGCCCAGTGGTGAAGCAAGCGTTAAGGGAGATGCATACGAC
TATGAACATTGCTATGACCCACTACAACATCAGGAAGAACGAGAGAGTCG
CGTGGGGAGTGAAACCTGCAGAGCGCGCCTTGTCCATAAGGATCTTGGAG
GAAGAGGGTGAAAAACATGCCGGAACTAGGGAGAACGAGGACCACATCAA
CACGGAGGAAGTCAAATCTGTAGCGCGGAGACTCATTGACGAGGAAAATG
TCACTTGCGACGAAGCTAGTGAGTTGACTAAGATGGTGTTCTTGGTCGAG
AACTTCACGTCGCCGCCCATCAGGATGAAGAACAAAAGGGGGCTACAGGC
GTGTCACACCTTCATCCACCCTACAGACGGTCTACTGAAAGACATCATCA
CCAACAGAATCAAAGATGACGACGCTCTGGCGAGGACCGGGGTTTTGGTG
TTGACACACAGGAAGCACGAGATGATCAAGGAGGTCTATGCTGTTATGGT
CGTGCTCGGCCGCGCCGTGTTCCGTCTACATGGGTGCGTACTCGACAAGG
GCATCTGCCCTCTAGACTCTTTGGGTCACGAACTTAACGACGGCAACCGG
ACTCAGCTTCTGAAAAGCGCCGGGATGTGGTTCCTCGGCCTCTCCGACTT
TACTGAACACATCACCAGGACCTTCCAGCTCACACTGCTCATCGACAAAT
GTATCAAACTCGGGCGCGCCCCCGAGCAGTGCCCAGTGGTGAAGCAAGCG
TTAAGGGAGATGCATACGACTATGAACATTGCTATGACCCACTACAACAT
CAGGAAGAACGAGAGAGTCGCGTGGGGA
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