prot_L-elsbetiae_contig5515.13800.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5515.13800.1
Unique Name	prot_L-elsbetiae_contig5515.13800.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	225

Homology

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BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Match: A0A6H5JS55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS55_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.190e-52
Identity = 129/249 (51.81%), Postives = 142/249 (57.03%), Query Frame = 0

Query:    1 YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWGFQSLAIDRGCASSLKVACEQQDSTST-----------GTAVETPATGNH-HRGSRPAEDDLGRRSGAVGSSTDGSSQQ-------LHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGNSWKR-RSSWGSYFKSADTATSGHGHDHGETVA------GGGDDNSAQSTRGRNVGGSRFATVLVIVGTFSQVLWLVSSLV 223
            +L   P  AL+ FSC DCSVG ALSA KQQCPP + FCAAVSRPR     +QS ++DRGCASSL VACEQ +   +           G +  TPA G+H HR S       G  S     S+DG SQ        L CCSTD+CNG EDAR EG RRS EH R LMEG   K  RSS  S       A  G G   G   A       G DDNSA   RG  VGGSRFATVLVIVGTFSQVLWLV  L+
Sbjct:   68 HLGTVPVLALQYFSCTDCSVGGALSAQKQQCPPGETFCAAVSRPRTSPLVYQSSSVDRGCASSLHVACEQLNPPQSSLARKDIEEKAGKSATTPAVGDHGHRESDGQNFLPGNSSSRSSRSSDGGSQNDGHHLQPLMCCSTDICNGLEDARREGQRRSGEHLRTLMEGAPRKEVRSSRDSPADGGIVAAGGRGSGVGTAAAVEKRMVDGEDDNSA---RGGGVGGSRFATVLVIVGTFSQVLWLVGRLI 313

[Close]

BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Match: D8LTZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 9.520e-50
Identity = 125/252 (49.60%), Postives = 138/252 (54.76%), Query Frame = 0

Query:    1 YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWGFQSLAIDRGCASSLKVACEQQD-----------STSTGTAVETPATGNH-HRGSRPAEDDLGRRSGAVGSSTDGSS----------QQLHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGNSWKRRS-SWGSYFKSADTATSGHGHDHG------ETVAGGGDDNSAQSTRGRNVGGSRFATVLVIVGTFSQVLWLVSSLV 223
            +L   P  AL+CFSC DCSVG ALSA KQQCPP + FCAAVSRPR     +QS ++DRGCASSL VACEQ +           +   G    TPA G+H HR S    D    R G+                   Q L CCSTD CNG EDAR EG RRSEEH R LMEG   K+   S GS          G G   G      E +  G DDNSA   RG   GGSRFATVLVIVGTFSQVLWLV  L+
Sbjct:   26 HLRTVPVLALQCFSCTDCSVGGALSAQKQQCPPGEAFCAAVSRPRTSPLVYQSSSVDRGCASSLNVACEQLNPPQSSLARKEIAEEAGGTATTPAVGDHGHRES----DGQNLRPGSXXXXXXXXXXXXXXXXHHLQPLLCCSTDFCNGLEDARREGQRRSEEHLRSLMEGTPRKKVGFSRGSLADGGIVTAGGRGSGVGTAAAVGERMVDGEDDNSA---RGGCEGGSRFATVLVIVGTFSQVLWLVGRLI 270

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5515.13800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JS55_9PHAE	2.190e-52	51.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LTZ0_ECTSI	9.520e-50	49.60	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 202..223
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..201
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 224..224
None	No IPR available	TMHMM	TMhelix		coord: 197..219

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5515	contig	L-elsbetiae_contig5515:9193..11142 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5515.13800.1	mRNA_L-elsbetiae_contig5515.13800.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5515 9193..11142 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5515.13800.1 ID=prot_L-elsbetiae_contig5515.13800.1|Name=mRNA_L-elsbetiae_contig5515.13800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=225bp
YLTAGPASALKCFSCDDCSVGVALSAHKQQCPPEDIFCAAVSRPRIGRWG
FQSLAIDRGCASSLKVACEQQDSTSTGTAVETPATGNHHRGSRPAEDDLG
RRSGAVGSSTDGSSQQLHCCSTDLCNGSEDARSEGYRRSEEHRRMLMEGN
SWKRRSSWGSYFKSADTATSGHGHDHGETVAGGGDDNSAQSTRGRNVGGS
RFATVLVIVGTFSQVLWLVSSLVY*