mRNA_L-elsbetiae_contig101.137.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.137.1
Unique NamemRNA_L-elsbetiae_contig101.137.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: D8LMR9_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR9_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 3.950e-74
Identity = 135/284 (47.54%), Postives = 178/284 (62.68%), Query Frame = 1
Query:   25 RLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            +L  ++ +GPPGTGKTSTILA AK+ Y  DF+ MV+E+NASDDRG+DVV+G+IK F  T  L    VKLVILDEADA+T +AQ ALR V+EK +   RFC  CNYVNKI   LQSRCTKFRF  +  + ++     + ++E +      VE V+ L  GD RRV+NL+QS  ++ Q+      +   H Y  + +   +DM+ I   LL  SFKD+FD I KL   KGY+L DIV  L  +V+         +  LLDE SN E  LA GGSE+L +G +V +F
Sbjct:   95 KLPHLLFYGPPGTGKTSTILACAKKLYGADFKMMVLELNASDDRGIDVVRGQIKEFAGTKRLFSSGVKLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRCTKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQSTHMAYQK------VDERHAYLCAAAPLKEDMEYIRNALLTASFKDAFDGILKLTTAKGYSLGDIVQELALKVME-IELPAAVMVHLLDEMSNTEERLAHGGSERLQLGSLVGAF 371          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A7S2XZS5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZS5_9STRA)

HSP 1 Score: 234 bits (596), Expect = 6.570e-72
Identity = 129/284 (45.42%), Postives = 179/284 (63.03%), Query Frame = 1
Query:   25 RLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            RL  ++ +GPPGTGKTSTILA A+  Y  +F SM +E+NASDDRG+DVV+ +IK+F  T  L    +KLVILDEADA+T++AQ ALR V+E+ +   RFC  CNYV+KI   LQSRC +FRF  +  D ++   +E+ +KEG+       E +L   NGD RR++NL+QS  ++         +++E V+  SGS  P D++ +   LL  SFK+S+  I  L   KGYAL D++S L   V +        LC LL E SNIEY L+ G S+KL +G +V +F
Sbjct:   46 RLPHLLFYGPPGTGKTSTILACARRIYGKNFSSMTLEMNASDDRGIDVVREQIKNFASTRRLFSSGMKLVILDEADAMTSDAQFALRRVIEQYTRHTRFCMICNYVSKIIPALQSRCMRFRFGPLRSDQVQDRLNEVIDKEGVAITPEGKESILKHGNGDMRRILNLLQSTSMAYDE------VTLETVHLTSGSPLPDDVEAVLHQLLNSSFKESYQFILGLAVTKGYALADLLSELVVLV-SRVQLPPAVLCPLLSELSNIEYRLSSGASDKLQLGALVGAF 322          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: M2Y763_GALSU (Replication factor C subunit n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y763_GALSU)

HSP 1 Score: 231 bits (590), Expect = 4.950e-71
Identity = 122/283 (43.11%), Postives = 184/283 (65.02%), Query Frame = 1
Query:   37 VIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKS-FKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSFHL 882
            ++ +GPPGTGKTSTILA A+  Y  +F+SMV+E+NASDDRG+DVV+  IK F  T  +    VKLVILDEADA+T+ AQ ALR +MEK +   RFC  CNY NKI   LQSRCT+FRF  +  + ++    +I E+EG++FE+ A+E ++ LS GD R  IN++QS FLS+ +      ++   VY+ +G+ S ++M++I   L E+  F   +D + K+  ++G+AL DI+  +  R+L    +   +   LL++ ++IE+  A GGSE L +  ++ SF +
Sbjct:   44 MLFYGPPGTGKTSTILACAEHMYGTNFKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGVKLVILDEADAMTSAAQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAEREGVVFEKDALETIIQLSQGDMRSCINILQSTFLSSGK------VTCSTVYENTGNPSNEEMEQIMDWLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLLTRNMSRRAKAY-LLEKLADIEHQFAFGGSELLNLCSLIGSFQI 319          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A2P6NXL0_9EUKA (Replication factor C subunit 5-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NXL0_9EUKA)

HSP 1 Score: 230 bits (587), Expect = 2.440e-70
Identity = 120/279 (43.01%), Postives = 180/279 (64.52%), Query Frame = 1
Query:   46 FGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSFHL 882
            +GPPGTGKTSTILA+A++ Y  ++  M++E+NASDDRG++VV+ +IK F  T S+    +KLV+LDEADA+T  AQ+ALR V+EK +   RFC  CNY+NK++  +QSRCT+FRF  +  D +    ++I + EG+   E  +  V+ L  GD R+ +N++QSA +   +      I  E +YQ +G   P D+  IF TL  K FK + D I+KL   KG AL DI++ L  ++L    ++  ++  L+D+ ++IE+ LA G SEKL +G +V +F L
Sbjct:   68 YGPPGTGKTSTILAVARKLYGKNYSQMILELNASDDRGINVVRDQIKDFANTRSMFTTGLKLVVLDEADAMTQPAQAALRRVIEKYTKTTRFCLICNYLNKLTPAIQSRCTRFRFGPLMTDDVIDRVTQISKLEGVKITEAGLSAVVRLGQGDMRKCLNVLQSAHMGYDK------IDEEEIYQCTGQPLPSDIQTIFDTLFNKGFKFAVDKISKLQSTKGLALQDIITELHRKILKVEFSEEVKMI-LIDKLADIEHRLAAGTSEKLNLGALVGAFQL 339          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A7S1BB71_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BB71_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.000e-69
Identity = 129/295 (43.73%), Postives = 183/295 (62.03%), Query Frame = 1
Query:   25 RLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFL---STQRPSTTSAISV--------EHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            RL  ++ +GPPGTGKTSTI+A A++ Y + + SM +E+NASD RG+DVV+  IK F  T  L  +  K++ILDEADA+T++AQ ALR ++EK S   RFC  CNYV+KI   LQSRCTKFRF  +    +     E+ EKEG+  ++G V+ +L LS GD RRV+NL+QSA++   S  + ++ SA SV          VY  +G   P+D+++I   LL  SF D+F  I K+    GY LTD++  +T  V++    D   L ++L+  S  E+ LA G  EKL +G +V  F
Sbjct:   47 RLPHLLFYGPPGTGKTSTIVAAARKMYGDGYGSMTLELNASDARGIDVVRNEIKEFAGTRQLFSRGTKMIILDEADAMTSDAQFALRRIIEKFSRNARFCLICNYVSKIIPALQSRCTKFRFAPLAEKLIHGRLMEVVEKEGVEIDKGGVDAILSLSGGDMRRVMNLLQSAYMNSVSISKEASDSATSVLALTTVTSRAVYMTAGHPLPEDVEKICDNLLNSSFPDAFSRIWKICTTNGYGLTDVLIDVTTAVMSMDLPDGV-LAEILEGMSECEHRLAFGTDEKLQLGGLVGVF 340          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: S0F304_CHOCR (AAA domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F304_CHOCR)

HSP 1 Score: 228 bits (580), Expect = 1.400e-69
Identity = 128/289 (44.29%), Postives = 182/289 (62.98%), Query Frame = 1
Query:    1 LRYKMTLTRLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIV 867
            LR  ++  RL  ++  GPPGTGKTSTILA AKE Y + F+SMV+E+NASDDRG+ VV+ +IKSF  T  +    VKL++LDEADA+TT AQ ALR V+EK +   RFC  CNYVNKI   LQSRCTKFRF  +  D +++   EI   E +      +E +L L  GD RR++N++QS  L++   +    I+ + VY  +G+  P D+   +  LLE++F DS   +  L+QDKG AL DI++ L P V  +  + N ++  + +  S+IEY +A G  EKL +  ++
Sbjct:   24 LRTLISNNRLPHLLFCGPPGTGKTSTILACAKEMYGSSFKSMVLELNASDDRGIGVVRDQIKSFASTKRIFSSGVKLIVLDEADAMTTAAQMALRRVVEKYAANTRFCIICNYVNKIIPALQSRCTKFRFGPLPADDVRKRVLEIAAFESVSISSDGLEALLILGKGDMRRILNVLQSTHLASSG-ARGGEITADAVYSNTGAPHPGDVKAAWGWLLERTFPDSSAKLRTLMQDKGLALGDIITELFPLVSTSSLSKNAKMY-MFESLSDIEYRMATGSLEKLNMAALI 310          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: B7FY37_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY37_PHATC)

HSP 1 Score: 228 bits (581), Expect = 1.410e-69
Identity = 123/282 (43.62%), Postives = 178/282 (63.12%), Query Frame = 1
Query:   37 VIAFGPPGTGKTSTILAMAKEYYQND--FRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            ++ +GPPGTGKTSTI+A AK  Y +   + SM +E+NASD RG+DVV+  IK F  T  L  K +KL+ILDEADA+T++AQ ALR ++EK +   RFC  CNYV+KI   LQSRCT+FRF  ++RD ++   +E+ E E     +  ++ +L LS GD RRV+NL+QS  +S +    TS      VY  SG+  P DMD+I   L+  +F+ + + I  +   KGYAL D+++ LT +++   + D+  L  LLD  SN+E+ LA G  EK+ +  +V  F
Sbjct:   53 LLLYGPPGTGKTSTIVAAAKRMYGSSSAYSSMTLELNASDARGIDVVRNEIKEFAGTKQLFNKGIKLIILDEADAMTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIEGRLTEVAEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAMSAEVVDETS------VYLTSGAPLPADMDQILDWLMNHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLDGMSNVEHRLAFGPDEKIQIASLVGVF 328          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A6T8HB61_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8HB61_9STRA)

HSP 1 Score: 228 bits (581), Expect = 3.080e-69
Identity = 127/281 (45.20%), Postives = 169/281 (60.14%), Query Frame = 1
Query:   37 VIAFGPPGTGKTSTILAMAKEYY-QNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            ++ +GPPGTGKTSTI+A AK  Y  N + SM +E+NASD RG+DVV+  IK F  T  L    VKL+ILDEADA+T +AQ ALR ++EK +   RFC  CNYV+KI   LQSRCTKFRF  ++RD +      +   E +   +  V+ +L LSNGD RRV+NL+Q+  +S +       +    VY  SGS  P+DM  I   LL  SF+ + D I+ +    GYAL D+++ LT  V  A       L DLLD  S+IEY L  G  E+L +G +V  F
Sbjct:   78 LLLYGPPGTGKTSTIVAAAKRMYGDNAYTSMALELNASDTRGIDVVRNEIKEFAGTRQLFRSGVKLIILDEADAMTNDAQFALRRIIEKYTKNARFCLICNYVSKIIPALQSRCTKFRFAPLSRDQMHGRLIHVANCENVNITDNGVDAILSLSNGDMRRVLNLLQTTSMSNK----VKEVDETAVYLTSGSPLPRDMTTILDFLLNHSFRSAIDSISTMCSTNGYALCDVLTDLTTMV-CAMELPGFVLADLLDGLSDIEYRLTFGADERLQIGSLVGVF 353          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A7S3UU54_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU54_HETAK)

HSP 1 Score: 227 bits (579), Expect = 3.360e-69
Identity = 125/290 (43.10%), Postives = 178/290 (61.38%), Query Frame = 1
Query:   25 RLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSFHLENRS 894
            RL  ++ +GPPGTGKTSTILA A+  Y   F SMV+E+NASDDRG+DVV+ ++K F  T  L    VKLV+LDEADA+T +AQ ALR V+EK +   RFC  CNYVN++   LQSRCT+FRF  +    +      + E+EG+   E   + +LDL  GD RRV+NL+Q+ F++         ++ ++VY  SG    +DMD I++ L  +  K ++D I  ++  KGYALTDI+  +   V AA       +C LL   S+IE+ LA G +E+L +G +  +F    R+
Sbjct:   52 RLPHLLFYGPPGTGKTSTILACARRLYGKSFASMVLELNASDDRGIDVVRNQVKEFAGTRRLFSSGVKLVVLDEADAMTADAQFALRRVIEKYTRHTRFCMICNYVNRVIPALQSRCTRFRFAPLQHGQVVGRLQHVVEQEGVPLTEDGRQALLDLGQGDMRRVLNLLQATFMAYGE------VTKQNVYLTSGHPLEEDMDLIYQKLNNEDLKPTYDCILHMMSSKGYALTDILHDVGILV-AATEYPPEVMCQLLIALSDIEHRLASGATERLQLGALAGAFQAARRA 334          
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Match: A0A7S2W057_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W057_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.130e-68
Identity = 123/282 (43.62%), Postives = 172/282 (60.99%), Query Frame = 1
Query:   37 VIAFGPPGTGKTSTILAMAKEYYQND--FRSMVMEINASDDRGLDVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVLVRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFEEGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSISPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAFSTDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSF 876
            ++ +GPPGTGKTSTI+A AK  Y     + SM +E+NASD RG+D V+ +IK F  T  L  K +KL+ILDEADA+T +AQ ALR ++EK +   RFC  CNYV+KI   LQSRCT+FRF  ++RD ++    ++  +E     EG +E +L LS GD RRV+NL+QS  +S +    TS      VY  SG+  P D+D I  +L    F  +++++  +   KGYA+ DI++ LT  ++      +  L DLLD  SNIEY LA G  EK+    +V  F
Sbjct:   54 LLFYGPPGTGKTSTIVAAAKRMYGGSAAYSSMALELNASDARGIDTVRNQIKEFAGTRQLFNKGIKLIILDEADAMTNDAQFALRRIIEKYTKNARFCLICNYVSKIIPALQSRCTRFRFSPLSRDQIRDRLCDVARQEDCNISEGGIEAILSLSGGDMRRVLNLLQSTAMSFETIDETS------VYLTSGAPLPSDIDTITNSLFNDDFVKAYENLITMCSTKGYAMADILTDLTT-IVTTMKLPSGVLADLLDGMSNIEYRLAYGTDEKIQGASLVGVF 328          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR9_ECTSI3.950e-7447.54AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XZS5_9STRA6.570e-7245.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M2Y763_GALSU4.950e-7143.11Replication factor C subunit n=2 Tax=Galdieria sul... [more]
A0A2P6NXL0_9EUKA2.440e-7043.01Replication factor C subunit 5-like n=1 Tax=Planop... [more]
A0A7S1BB71_9STRA1.000e-6943.73Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
S0F304_CHOCR1.400e-6944.29AAA domain-containing protein n=1 Tax=Chondrus cri... [more]
B7FY37_PHATC1.410e-6943.62Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A6T8HB61_9STRA3.080e-6945.20Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3UU54_HETAK3.360e-6943.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W057_9STRA1.130e-6843.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:13804..14706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.0
Seed ortholog evalue1.7e-61
Seed eggNOG ortholog2880.D8LMR9
Preferred nameRFC5
KEGG koko:K10756
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005663,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010604,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022616,GO:0030554,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031347,GO:0031348,GO:0031389,GO:0031390,GO:0031391,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034644,GO:0034645,GO:0035639,GO:0036094,GO:0042623,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043599,GO:0043601,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0061860,GO:0065007,GO:0065009,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090329,GO:0090618,GO:0097159,GO:0097367,GO:0098813,GO:0104004,GO:1900262,GO:1900264,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903460,GO:1904949,GO:2000112,GO:2000278,GO:2000573
EggNOG free text desc.DNA replication
EggNOG OGsCOG0470@1,KOG0990@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036,ko03400
Exons1
Model size903
Cds size891
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.246317-UTR-L-elsbetiae_contig101:13803..138151622815241.246317-UTR-L-elsbetiae_contig101:13803..13815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig101 13804..13815 +
1691682790.6658177-UTR-L-elsbetiae_contig101:13803..138151691682790.6658177-UTR-L-elsbetiae_contig101:13803..13815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig101 13804..13815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.263852-CDS-L-elsbetiae_contig101:13815..147061622815241.263852-CDS-L-elsbetiae_contig101:13815..14706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 13816..14706 +
1691682790.6779633-CDS-L-elsbetiae_contig101:13815..147061691682790.6779633-CDS-L-elsbetiae_contig101:13815..14706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 13816..14706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.137.1prot_L-elsbetiae_contig101.137.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 13816..14706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.137.1

>prot_L-elsbetiae_contig101.137.1 ID=prot_L-elsbetiae_contig101.137.1|Name=mRNA_L-elsbetiae_contig101.137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=297bp
MTLTRLALVIAFGPPGTGKTSTILAMAKEYYQNDFRSMVMEINASDDRGL
DVVKGRIKSFVETASLSGKSVKLVILDEADALTTEAQSALRSVMEKSSVL
VRFCFCCNYVNKISIPLQSRCTKFRFQGINRDSLKQMASEICEKEGLIFE
EGAVEVVLDLSNGDARRVINLVQSAFLSTQRPSTTSAISVEHVYQLSGSI
SPKDMDRIFRTLLEKSFKDSFDDINKLVQDKGYALTDIVSGLTPRVLAAF
STDNTRLCDLLDEFSNIEYNLAGGGSEKLAVGHIVSSFHLENRSKK*
back to top

mRNA from alignment at L-elsbetiae_contig101:13804..14706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.137.1 ID=mRNA_L-elsbetiae_contig101.137.1|Name=mRNA_L-elsbetiae_contig101.137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=903bp|location=Sequence derived from alignment at L-elsbetiae_contig101:13804..14706+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCGCTATAAGATGACGTTGACCCGTCTCGCCCTCGTAATCGCCTTCGG ACCTCCGGGTACAGGGAAAACGTCGACAATCTTGGCAATGGCGAAAGAAT ACTACCAGAACGACTTCAGGTCCATGGTAATGGAAATCAATGCATCCGAT GACAGGGGGCTTGACGTCGTGAAGGGAAGGATAAAATCTTTTGTCGAAAC AGCCTCCTTATCGGGCAAATCTGTCAAACTAGTGATACTCGACGAAGCCG ATGCTCTCACAACAGAGGCCCAGTCGGCGCTCAGAAGTGTAATGGAGAAG AGTTCTGTGCTTGTCAGATTTTGCTTTTGCTGTAACTATGTAAACAAGAT AAGCATCCCTTTGCAGTCGCGATGTACGAAGTTCCGTTTTCAAGGAATCA ACAGAGATTCTCTGAAACAAATGGCTTCGGAAATATGTGAAAAAGAAGGT TTGATATTTGAAGAGGGAGCAGTCGAAGTGGTGCTGGACCTATCGAACGG AGACGCACGGCGCGTCATAAATCTTGTACAATCGGCATTTCTAAGCACTC AACGTCCGTCAACGACATCAGCGATATCCGTCGAGCACGTGTATCAACTA TCGGGTAGCATATCCCCGAAGGACATGGATCGCATATTTAGAACTCTATT GGAAAAGTCGTTCAAAGATTCGTTCGACGATATCAACAAATTGGTACAAG ATAAGGGGTACGCCTTGACAGACATTGTGTCTGGGCTAACGCCTAGAGTT CTAGCTGCCTTTTCAACTGACAATACTCGTCTTTGTGATCTATTGGACGA GTTTTCCAACATCGAGTACAATTTAGCTGGCGGAGGGTCGGAAAAATTGG CTGTCGGGCACATCGTCTCGAGTTTCCATTTGGAAAATAGATCTAAAAAG TAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig101:13804..14706+

>mRNA_L-elsbetiae_contig101.137.1 ID=mRNA_L-elsbetiae_contig101.137.1|Name=mRNA_L-elsbetiae_contig101.137.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1782bp|location=Sequence derived from alignment at L-elsbetiae_contig101:13804..14706+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTTGACCCGTCTCGCCCTCGTAATCGCCTTCGGACCTCCGGGTAC
AGGGAAAACGTCGACAATCTTGGCAATGGCGAAAGAATACTACCAGAACG
ACTTCAGGTCCATGGTAATGGAAATCAATGCATCCGATGACAGGGGGCTT
GACGTCGTGAAGGGAAGGATAAAATCTTTTGTCGAAACAGCCTCCTTATC
GGGCAAATCTGTCAAACTAGTGATACTCGACGAAGCCGATGCTCTCACAA
CAGAGGCCCAGTCGGCGCTCAGAAGTGTAATGGAGAAGAGTTCTGTGCTT
GTCAGATTTTGCTTTTGCTGTAACTATGTAAACAAGATAAGCATCCCTTT
GCAGTCGCGATGTACGAAGTTCCGTTTTCAAGGAATCAACAGAGATTCTC
TGAAACAAATGGCTTCGGAAATATGTGAAAAAGAAGGTTTGATATTTGAA
GAGGGAGCAGTCGAAGTGGTGCTGGACCTATCGAACGGAGACGCACGGCG
CGTCATAAATCTTGTACAATCGGCATTTCTAAGCACTCAACGTCCGTCAA
CGACATCAGCGATATCCGTCGAGCACGTGTATCAACTATCGGGTAGCATA
TCCCCGAAGGACATGGATCGCATATTTAGAACTCTATTGGAAAAGTCGTT
CAAAGATTCGTTCGACGATATCAACAAATTGGTACAAGATAAGGGGTACG
CCTTGACAGACATTGTGTCTGGGCTAACGCCTAGAGTTCTAGCTGCCTTT
TCAACTGACAATACTCGTCTTTGTGATCTATTGGACGAGTTTTCCAACAT
CGAGTACAATTTAGCTGGCGGAGGGTCGGAAAAATTGGCTGTCGGGCACA
TCGTCTCGAGTTTCCATTTGGAAAATAGATCTAAAAAGTAGATGACGTTG
ACCCGTCTCGCCCTCGTAATCGCCTTCGGACCTCCGGGTACAGGGAAAAC
GTCGACAATCTTGGCAATGGCGAAAGAATACTACCAGAACGACTTCAGGT
CCATGGTAATGGAAATCAATGCATCCGATGACAGGGGGCTTGACGTCGTG
AAGGGAAGGATAAAATCTTTTGTCGAAACAGCCTCCTTATCGGGCAAATC
TGTCAAACTAGTGATACTCGACGAAGCCGATGCTCTCACAACAGAGGCCC
AGTCGGCGCTCAGAAGTGTAATGGAGAAGAGTTCTGTGCTTGTCAGATTT
TGCTTTTGCTGTAACTATGTAAACAAGATAAGCATCCCTTTGCAGTCGCG
ATGTACGAAGTTCCGTTTTCAAGGAATCAACAGAGATTCTCTGAAACAAA
TGGCTTCGGAAATATGTGAAAAAGAAGGTTTGATATTTGAAGAGGGAGCA
GTCGAAGTGGTGCTGGACCTATCGAACGGAGACGCACGGCGCGTCATAAA
TCTTGTACAATCGGCATTTCTAAGCACTCAACGTCCGTCAACGACATCAG
CGATATCCGTCGAGCACGTGTATCAACTATCGGGTAGCATATCCCCGAAG
GACATGGATCGCATATTTAGAACTCTATTGGAAAAGTCGTTCAAAGATTC
GTTCGACGATATCAACAAATTGGTACAAGATAAGGGGTACGCCTTGACAG
ACATTGTGTCTGGGCTAACGCCTAGAGTTCTAGCTGCCTTTTCAACTGAC
AATACTCGTCTTTGTGATCTATTGGACGAGTTTTCCAACATCGAGTACAA
TTTAGCTGGCGGAGGGTCGGAAAAATTGGCTGTCGGGCACATCGTCTCGA
GTTTCCATTTGGAAAATAGATCTAAAAAGTAG
back to top