mRNA_L-elsbetiae_contig5515.13799.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5515.13799.1
Unique NamemRNA_L-elsbetiae_contig5515.13799.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5515.13799.1 vs. uniprot
Match: D8LTY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTY9_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 1.600e-80
Identity = 150/237 (63.29%), Postives = 169/237 (71.31%), Query Frame = 1 
Query:    1 DAPPRDVDSMKKEIAELQSGTTASLDRAIAAAEATTGIATQTSIQLKEQRQQMGEIDAEARGIDSKLKKTGYNLKHGLTWRGALTSPFRRNKPKAKDAG----TAGDISPVFKDDYTQ---PAAAPSDGSR-----SPKKRGSLFKGRAVEKSAPV-------VEAPKVPEHAPDGFEDQLDKLDGLLDGLNLQAKAIGAELKQQNDGIEVLGARVEPLRQETASQAKQIKRRFGVK 654
            D+ PRDV SMK EIAELQ+GTTASLDRAIAAAEAT  +  +T + LKEQR+QMGEIDAEAR ID  LK+TG+NLK+GLTWRGALT+PFRR             T GDISPVFKDD+ Q   P  AP+ G       SPKK G L  G   +K+            A K+PE+ P+GFE QLD LD LLDGL +QAK IGAELKQQN+GIEVLG RVEPLRQETA QAKQIKRRFGVK
Sbjct:   33 DSSPRDVASMKAEIAELQAGTTASLDRAIAAAEATASVGARTQVTLKEQREQMGEIDAEARAIDGTLKRTGHNLKYGLTWRGALTAPFRRKXXXXXXXXXXXITGGDISPVFKDDFRQSTPPGGAPAHGGSTSSTPSPKKGGRLKFGSPRKKAGAARAEEIGTKAASKLPENVPEGFETQLDTLDSLLDGLTVQAKEIGAELKQQNEGIEVLGERVEPLRQETAFQAKQIKRRFGVK 269
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5515.13799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTY9_ECTSI1.600e-8063.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5515contigL-elsbetiae_contig5515:4203..4862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_003830.1
Exons1
Model size660
Cds size633
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.8223095-CDS-L-elsbetiae_contig5515:4202..48351622816580.8223095-CDS-L-elsbetiae_contig5515:4202..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 4203..4835 -
1691683662.0032167-CDS-L-elsbetiae_contig5515:4202..48351691683662.0032167-CDS-L-elsbetiae_contig5515:4202..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5515 4203..4835 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.8368227-UTR-L-elsbetiae_contig5515:4835..48621622816580.8368227-UTR-L-elsbetiae_contig5515:4835..4862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5515 4836..4862 -
1691683662.0151818-UTR-L-elsbetiae_contig5515:4835..48621691683662.0151818-UTR-L-elsbetiae_contig5515:4835..4862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5515 4836..4862 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5515.13799.1prot_L-elsbetiae_contig5515.13799.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5515 4203..4835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5515.13799.1

>prot_L-elsbetiae_contig5515.13799.1 ID=prot_L-elsbetiae_contig5515.13799.1|Name=mRNA_L-elsbetiae_contig5515.13799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MKKEIAELQSGTTASLDRAIAAAEATTGIATQTSIQLKEQRQQMGEIDAE
ARGIDSKLKKTGYNLKHGLTWRGALTSPFRRNKPKAKDAGTAGDISPVFK
DDYTQPAAAPSDGSRSPKKRGSLFKGRAVEKSAPVVEAPKVPEHAPDGFE
DQLDKLDGLLDGLNLQAKAIGAELKQQNDGIEVLGARVEPLRQETASQAK
QIKRRFGVKG*
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mRNA from alignment at L-elsbetiae_contig5515:4203..4862-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5515.13799.1 ID=mRNA_L-elsbetiae_contig5515.13799.1|Name=mRNA_L-elsbetiae_contig5515.13799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5515:4203..4862- (Laminarionema elsbetiae ELsaHSoW15)
GATGCTCCCCCTCGCGACGTTGACTCCATGAAAAAGGAGATAGCAGAGCT
CCAATCAGGGACGACTGCTTCTCTGGACCGAGCAATAGCGGCGGCTGAAG
CGACCACCGGCATTGCGACCCAGACGTCCATCCAGCTGAAAGAACAGCGC
CAGCAAATGGGCGAGATCGACGCCGAGGCTCGAGGCATCGACAGCAAGTT
AAAGAAAACTGGGTACAACCTCAAGCACGGCCTTACGTGGCGCGGCGCCC
TCACTTCGCCGTTCCGGCGAAATAAACCTAAGGCGAAGGATGCGGGCACC
GCGGGTGACATCTCCCCGGTATTTAAAGATGACTACACTCAGCCGGCAGC
AGCTCCCAGCGATGGAAGCCGTAGCCCGAAGAAACGCGGCAGCTTATTCA
AGGGGCGGGCAGTGGAGAAGTCAGCGCCGGTGGTTGAGGCGCCCAAGGTA
CCCGAGCATGCTCCTGACGGGTTTGAGGATCAACTTGACAAGCTGGATGG
CCTGCTGGATGGCCTCAACCTCCAGGCGAAGGCAATTGGGGCTGAGTTGA
AGCAACAGAACGACGGCATCGAGGTTTTGGGGGCGCGCGTGGAGCCACTG
CGACAGGAAACAGCCTCCCAGGCGAAACAGATCAAACGGCGGTTCGGGGT
GAAAGGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5515:4203..4862-

>mRNA_L-elsbetiae_contig5515.13799.1 ID=mRNA_L-elsbetiae_contig5515.13799.1|Name=mRNA_L-elsbetiae_contig5515.13799.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig5515:4203..4862- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAAAGGAGATAGCAGAGCTCCAATCAGGGACGACTGCTTCTCTGGA
CCGAGCAATAGCGGCGGCTGAAGCGACCACCGGCATTGCGACCCAGACGT
CCATCCAGCTGAAAGAACAGCGCCAGCAAATGGGCGAGATCGACGCCGAG
GCTCGAGGCATCGACAGCAAGTTAAAGAAAACTGGGTACAACCTCAAGCA
CGGCCTTACGTGGCGCGGCGCCCTCACTTCGCCGTTCCGGCGAAATAAAC
CTAAGGCGAAGGATGCGGGCACCGCGGGTGACATCTCCCCGGTATTTAAA
GATGACTACACTCAGCCGGCAGCAGCTCCCAGCGATGGAAGCCGTAGCCC
GAAGAAACGCGGCAGCTTATTCAAGGGGCGGGCAGTGGAGAAGTCAGCGC
CGGTGGTTGAGGCGCCCAAGGTACCCGAGCATGCTCCTGACGGGTTTGAG
GATCAACTTGACAAGCTGGATGGCCTGCTGGATGGCCTCAACCTCCAGGC
GAAGGCAATTGGGGCTGAGTTGAAGCAACAGAACGACGGCATCGAGGTTT
TGGGGGCGCGCGTGGAGCCACTGCGACAGGAAACAGCCTCCCAGGCGAAA
CAGATCAAACGGCGGTTCGGGGTGAAAGGTTGAATGAAAAAGGAGATAGC
AGAGCTCCAATCAGGGACGACTGCTTCTCTGGACCGAGCAATAGCGGCGG
CTGAAGCGACCACCGGCATTGCGACCCAGACGTCCATCCAGCTGAAAGAA
CAGCGCCAGCAAATGGGCGAGATCGACGCCGAGGCTCGAGGCATCGACAG
CAAGTTAAAGAAAACTGGGTACAACCTCAAGCACGGCCTTACGTGGCGCG
GCGCCCTCACTTCGCCGTTCCGGCGAAATAAACCTAAGGCGAAGGATGCG
GGCACCGCGGGTGACATCTCCCCGGTATTTAAAGATGACTACACTCAGCC
GGCAGCAGCTCCCAGCGATGGAAGCCGTAGCCCGAAGAAACGCGGCAGCT
TATTCAAGGGGCGGGCAGTGGAGAAGTCAGCGCCGGTGGTTGAGGCGCCC
AAGGTACCCGAGCATGCTCCTGACGGGTTTGAGGATCAACTTGACAAGCT
GGATGGCCTGCTGGATGGCCTCAACCTCCAGGCGAAGGCAATTGGGGCTG
AGTTGAAGCAACAGAACGACGGCATCGAGGTTTTGGGGGCGCGCGTGGAG
CCACTGCGACAGGAAACAGCCTCCCAGGCGAAACAGATCAAACGGCGGTT
CGGGGTGAAAGGTTGA
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