mRNA_L-elsbetiae_contig5513.13795.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5513.13795.1
Unique NamemRNA_L-elsbetiae_contig5513.13795.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5513.13795.1 vs. uniprot
Match: D8LIA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA1_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.370e-55
Identity = 106/131 (80.92%), Postives = 112/131 (85.50%), Query Frame = 1 
Query:    1 TRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFAEMLRISPAPRGSAGGGADEGWGGSGYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFHSQHVGDVVQLYAFPSRSK 393
            TRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFA+ML+ISP    + GGG  EG G +GYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENF+S        LY FP +SK
Sbjct:   46 TRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFAQMLQISPTL--TTGGGL-EGAGPTGYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFNS--------LYPFPGKSK 165
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BLAST of mRNA_L-elsbetiae_contig5513.13795.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.750e-50
Identity = 95/114 (83.33%), Postives = 100/114 (87.72%), Query Frame = 1 
Query:    1 TRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFAEMLRISPAPRGSAGGGADEGWGGSGYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFHS 342
            TRNKAVKAAT ELLWSLLREPSV+RHKSCEAVTSFFA+ML+ISP      G    EG G + YLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENF+S
Sbjct:  583 TRNKAVKAATTELLWSLLREPSVTRHKSCEAVTSFFAQMLQISPTLTAGVG---PEGGGPARYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSRSLELVRFLLENFNS 693
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5513.13795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIA1_ECTSI5.370e-5580.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ1_9PHAE2.750e-5083.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5513contigL-elsbetiae_contig5513:6718..8997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.1
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D8LIA1
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons3
Model size593
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5513.13795.1prot_L-elsbetiae_contig5513.13795.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5513 6718..8996 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816580.5205305-CDS-L-elsbetiae_contig5513:6717..69321622816580.5205305-CDS-L-elsbetiae_contig5513:6717..6932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 6718..6932 +
1691683661.7843752-CDS-L-elsbetiae_contig5513:6717..69321691683661.7843752-CDS-L-elsbetiae_contig5513:6717..6932Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 6718..6932 +
1622816580.5327115-CDS-L-elsbetiae_contig5513:7857..79841622816580.5327115-CDS-L-elsbetiae_contig5513:7857..7984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 7858..7984 +
1691683661.805364-CDS-L-elsbetiae_contig5513:7857..79841691683661.805364-CDS-L-elsbetiae_contig5513:7857..7984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 7858..7984 +
1622816580.5439548-CDS-L-elsbetiae_contig5513:8747..89961622816580.5439548-CDS-L-elsbetiae_contig5513:8747..8996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 8748..8996 +
1691683661.8152409-CDS-L-elsbetiae_contig5513:8747..89961691683661.8152409-CDS-L-elsbetiae_contig5513:8747..8996Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5513 8748..8996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5513.13795.1

>prot_L-elsbetiae_contig5513.13795.1 ID=prot_L-elsbetiae_contig5513.13795.1|Name=mRNA_L-elsbetiae_contig5513.13795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
TRNKAVKAATPELLWSLLREPSVSRHKSCEAVTSFFAEMLRISPAPRGSA
GGGADEGWGGSGYLHHHKFLGQCIDFLREKAECVPPSGVLSEAEEAAVSR
SLELVRFLLENFHSQHVGDVVQLYAFPSRSKRAAAAAAARQVKQEQQGQD
QGEGTAETARAKTEARASAGAAGAAAPMVSADAVMEDAAATGVAVKE
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mRNA from alignment at L-elsbetiae_contig5513:6718..8997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5513.13795.1 ID=mRNA_L-elsbetiae_contig5513.13795.1|Name=mRNA_L-elsbetiae_contig5513.13795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2280bp|location=Sequence derived from alignment at L-elsbetiae_contig5513:6718..8997+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAGAAACAAGGCGGTCAAAGCGGCGACTCCGGAGCTGCTGTGGTCGCT
CCTGCGCGAACCCAGCGTGTCGAGGCACAAGTCGTGCGAGGCTGTCACCA
GCTTCTTCGCCGAGATGCTGCGGATCTCGCCGGCCCCGAGGGGCTCCGCG
GGGGGCGGCGCCGACGAGGGTTGGGGGGGTTCGGGGTATCTGCACCACCA
CAAGTTCTTGGGCCAGTGAGTATTTTTTCTTTTTTTGTGTCCATTTATGT
GGTATGCATTTATGTGCGTACGGCTCTGCTCGGTTTGTGCGCGGCTGCCG
CTTCTGCTAGACGCTGACTGTTGTGCTTTGCTTTTGTGTGTTGCGAGAGA
GGCGAGAGTGGGGGGAAGGAGGACGATGACGTTCTGTTGTGCTGCGCGCG
ATGCCTCCCTCCCAGGCGCTGCTTCGCGCTGCGAGCTCCGTGCGTTTTTT
TTGTGTGTTGTCTTTTCTCTAGTGGTCGTTTCCCTTGCGTTTCTGTTTTG
TTGCTTTTTTGGCCTTTCCCCCTCTTGTAGCCCTTTAGGGGGGGGGGGGG
GGGGGGGTTCTTCTCCCTTCCTGGTACCTCTCCCCCCCCGGTATGGGGCG
CCAGAGTGATACATACACGCACTCTACTCNNNNNNNNNNTTTTTCTCCCC
TCCTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCTTCCCCCCCC
CTTCGCCTTCGTGGTGGGGGGGGGGGGGGGGGGGGGGGTTCTTGGTCTCT
CCTGGCCACACCCGCCCGCGGTTCATGTTCGCGTGCATAGTGACTCCACC
ACTCTCGTTCGCCTTGCTCTCTTTCTCTCTCTCTCTCTTTCTGTCTCTCT
CTTTCTGTCTATCTCTTCTTTATTTACTACCGAAAACATTCATAGCGGAA
TGTTCAATCGGCGGAGAAGAGGAATGTTCCATCAAAGGGCGTTGGTGGCT
CGCTGTCGCTCGTAGGCAATTTGCTTGTATTTTGCTATCTATGTACTACC
GAAACAACCGCACAAGAATCAACCGAACCGAACCGAATGTCGTGACCCGG
TCCCCCCATCATTTTGGGCTAAATTTTCAAGTTGCCCTCATAACAGTAGT
GACCAAACGATCCAACCCAACCCAACCCAACCCAACCCAGGTGCATCGAC
TTCTTGCGGGAGAAGGCCGAGTGCGTCCCCCCATCGGGCGTCCTTAGCGA
GGCGGAGGAGGCTGCCGTGTCGCGCTCCCTCGAGCTCGTGCGCTTCCTGC
TCGAGAACTTTCACTCGGTGAGTCGATAGTCACCGAGAGCAAGAGCAGGA
GCAGGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGGTTGT
CTTTATTCTCCGGTGTGCGTATTGTACCGCGGCGTCCGTCCGGTGTTGGC
AGACACGAGTTGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCAGCTGCTGCTGTCTCAGCTTCATGTCGGAGACGG
ATCCGACGATAATTGTATATTATGTATTGTCTCTGCCGGCTTGATGATGT
ATTCACGTAGCCTCCCGTTCCCGAGTGGTCAATGCCGTGATAGATCACCA
GGTGTGAACATGGTGGCCGAATCTTGCTGGGAAAAGTTGGATGGATGCGT
CCAACTTCTTTGTGCGTGCCTGCTGTGTTGCTGCACGAGAGAAAGAGAGA
GAGAGAGAGACACACACACAGAGATGGACAGACAGGAATTGAGCGCGCCT
CGCCCAGCCGCCCCTACGGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCTCCTGCCCCC
CCNNNNNNNNNNAGAGAGAGAGAGAAACACCCACACCGAGGAGGGCACAC
ATGAATTGCGCGCCCCCCCCCCCCCCCCCTCCCGGGCCCCCCCCCCCCCC
CCCGGCCGCCTCCGCCCTAACCCTCTCTGTTGTTGTCCACCTTGCCGTCT
TACCGTCAACCGCACACTCAATACCCTCAGCAACACGTCGGGGACGTGGT
GCAGCTGTACGCGTTCCCGTCACGGTCCAAAAGGGCAGCAGCAGCGGCGG
CGGCGCGGCAGGTGAAGCAAGAGCAACAGGGGCAGGATCAAGGGGAGGGC
ACCGCCGAGACCGCCAGGGCCAAGACGGAGGCCAGAGCTTCCGCCGGCGC
CGCCGGCGCCGCCGCCCCCATGGTGTCCGCGGATGCTGTGATGGAGGACG
CAGCGGCAACGGGAGTCGCTGTCAAAGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5513:6718..8997+

>mRNA_L-elsbetiae_contig5513.13795.1 ID=mRNA_L-elsbetiae_contig5513.13795.1|Name=mRNA_L-elsbetiae_contig5513.13795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig5513:6718..8997+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAGAAACAAGGCGGTCAAAGCGGCGACTCCGGAGCTGCTGTGGTCGCT
CCTGCGCGAACCCAGCGTGTCGAGGCACAAGTCGTGCGAGGCTGTCACCA
GCTTCTTCGCCGAGATGCTGCGGATCTCGCCGGCCCCGAGGGGCTCCGCG
GGGGGCGGCGCCGACGAGGGTTGGGGGGGTTCGGGGTATCTGCACCACCA
CAAGTTCTTGGGCCAACCAGAAACAAGGCGGTCAAAGCGGCGACTCCGGA
GCTGCTGTGGTCGCTCCTGCGCGAACCCAGCGTGTCGAGGCACAAGTCGT
GCGAGGCTGTCACCAGCTTCTTCGCCGAGATGCTGCGGATCTCGCCGGCC
CCGAGGGGCTCCGCGGGGGGCGGCGCCGACGAGGGTTGGGGGGGTTCGGG
GTATCTGCACCACCACAAGTTCTTGGGCCAGTGCATCGACTTCTTGCGGG
AGAAGGCCGAGTGCGTCCCCCCATCGGGCGTCCTTAGCGAGGCGGAGGAG
GCTGCCGTGTCGCGCTCCCTCGAGCTCGTGCGCTTCCTGCTCGAGAACTT
TCACTCGGTGCATCGACTTCTTGCGGGAGAAGGCCGAGTGCGTCCCCCCA
TCGGGCGTCCTTAGCGAGGCGGAGGAGGCTGCCGTGTCGCGCTCCCTCGA
GCTCGTGCGCTTCCTGCTCGAGAACTTTCACTCGCAACACGTCGGGGACG
TGGTGCAGCTGTACGCGTTCCCGTCACGGTCCAAAAGGGCAGCAGCAGCG
GCGGCGGCGCGGCAGGTGAAGCAAGAGCAACAGGGGCAGGATCAAGGGGA
GGGCACCGCCGAGACCGCCAGGGCCAAGACGGAGGCCAGAGCTTCCGCCG
GCGCCGCCGGCGCCGCCGCCCCCATGGTGTCCGCGGATGCTGTGATGGAG
GACGCAGCGGCAACGGGAGTCGCTGTCAAAGAGCAACACGTCGGGGACGT
GGTGCAGCTGTACGCGTTCCCGTCACGGTCCAAAAGGGCAGCAGCAGCGG
CGGCGGCGCGGCAGGTGAAGCAAGAGCAACAGGGGCAGGATCAAGGGGAG
GGCACCGCCGAGACCGCCAGGGCCAAGACGGAGGCCAGAGCTTCCGCCGG
CGCCGCCGGCGCCGCCGCCCCCATGGTGTCCGCGGATGCTGTGATGGAGG
ACGCAGCGGCAACGGGAGTCGCTGTCAAAGAG
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