Homology
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Match:
D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)
HSP 1 Score: 87.0 bits (214), Expect = 4.470e-17
Identity = 56/127 (44.09%), Postives = 74/127 (58.27%), Query Frame = 1
Query: 43 QGLEKLERAKGLLLEG-GARVNIGDVNKLLKQSRAAFFEEHSRSLSEGEGAXXXXXXXXXXXXXXXEAVAEPWRGAPLAATVCITSELAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLEGEGK 420
QGL+++E+A+ LL G + V KLL QS+AA+ + S + G VA +GAP AA +C+ SE FPEAIALVRWFCS+ VASLCEVA+ E EA++LE +GK
Sbjct: 45 QGLQQIEQARSLLEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAG---------------GENTDVAAISQGAPQAALICVASEAVFPEAIALVRWFCSKHVASLCEVAQAMEIEAKRLEKQGK 156
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Match:
A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)
HSP 1 Score: 81.6 bits (200), Expect = 3.530e-15
Identity = 51/123 (41.46%), Postives = 73/123 (59.35%), Query Frame = 1
Query: 43 QGLEKLERAKGLLLEG-GARVNIGDVNKLLKQSRAAFFEEHSRSLSEGEGAXXXXXXXXXXXXXXXEAVAEPWRGAPLAATVCITSELAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLE 408
QGL+++E+A+ L+ G + V KLL QS+AA+ + S + GE A+++ GAP AA +C+ SE FP+AIALVRWFCS+ VASLCEV++ E EA++LE
Sbjct: 47 QGLQQIEQARSLVEAAPGDGGGVDRVKKLLVQSKAAYLQAASALAAAGE------------ENTDVSAISQ---GAPQAALICVASEAVFPKAIALVRWFCSKHVASLCEVSQAMEIEAKRLE 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig551.13789.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 4.47e-17 / Id = 44.09 Expect = 3.53e-15 / Id = 41.46 Sequence D7FRR3_ECTSI A0A6H5JP83_9PHAE
Match Name E-value Identity Description
D7FRR3_ECTSI 4.470e-17 44.09 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE 3.530e-15 41.46 EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 3
Model size 447
Cds size 447
Stop 0
Start 0
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816579.9030964-CDS-L-elsbetiae_contig551:20931..21046 1622816579.9030964-CDS-L-elsbetiae_contig551:20931..21046 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 20932..21046 -
1691683661.3337553-CDS-L-elsbetiae_contig551:20931..21046 1691683661.3337553-CDS-L-elsbetiae_contig551:20931..21046 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 20932..21046 -
1622816579.9140587-CDS-L-elsbetiae_contig551:21408..21626 1622816579.9140587-CDS-L-elsbetiae_contig551:21408..21626 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 21409..21626 -
1691683661.3480692-CDS-L-elsbetiae_contig551:21408..21626 1691683661.3480692-CDS-L-elsbetiae_contig551:21408..21626 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 21409..21626 -
1622816579.9329348-CDS-L-elsbetiae_contig551:22442..22556 1622816579.9329348-CDS-L-elsbetiae_contig551:22442..22556 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 22443..22556 -
1691683661.357785-CDS-L-elsbetiae_contig551:22442..22556 1691683661.357785-CDS-L-elsbetiae_contig551:22442..22556 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig551 22443..22556 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig551.13789.1
>prot_L-elsbetiae_contig551.13789.1 ID=prot_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
VGGRLGGSQRQPSDQGLEKLERAKGLLLEGGARVNIGDVNKLLKQSRAAF FEEHSRSLSEGEGAAGAAAAAVAAAGGGGEAVAEPWRGAPLAATVCITSE LAFPEAIALVRWFCSQFVASLCEVARVAEGEARKLEGEGKSRRKSRVGS back to top mRNA from alignment at L-elsbetiae_contig551:20932..22556-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig551.13789.1 ID=mRNA_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1625bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20932..22556- (Laminarionema elsbetiae ELsaHSoW15)GTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCGTCCGACCAGGGCCT
GGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGAAGGGGGCGCCAGAG
TCAACATCGGCGAC GTAAGTTTTTGCGCATTTTTTCTTCCTTGCAACAGA
GCTTACGCGGTAACGACCCGAATCTTCATGTTCGCACAACAGTGTCCGAG
GTGCCCAGGTGCCATGAACAGTAATAGTACCGGCCGCTTTTTCTGTACGA
TGTTTGGCGGAAAACATGCGCACGCTTTTGGTATACATACGATTGCCGAT
AGCAGAACAAGCCCCTCCATGGGCGCGCGGGCAGACACGGCGGGCATGCT
TGCTCGCTTTGCGCCTCTGCCGAGTGCGCCGGCGTGAACGCACGCTTGGG
CAAACTCCTGGAACGCGCGAAAAAAACAATAAAACACTCGAGGCTAGTTT
GGTTGCAATGGTTTTGTCTTGCGCTTCGTGGGGTAGAGATTTATGCCAAA
AGTCTGCTCGCTTCCCTCTCGCCGCCGCGGCGGCTGCCACACCCACCCAC
TACCCTCTCTACCCTCTCTCCGAATGAATGGACATCGTTCAGCGCTGTCC
TGGTTGAAATTGAGCTCTGAAGATACAAGTTAATAGTGTGACACATCAAG
ATCTGCACCATCGCTGTAAATATCAACCCGTCGCGATATCTCTTGACGAA
AATGCATATTTTGATACATAAAATGTGTGTGTAGGTGATATTAATACCTA
TCTCCCTCTACATGTTTTAACTGCATTTGTTTCGACCTTGGTCCCGATAC
AGATAGCAACCCTTTATCGTCGTGTTCTCTTTTGAATCCATACCAAGTTT
CAGCGAGGCACATGCCCCCCCGTGCGCGCGCCTTCCCTATGCGGTCCATG
CCGTCATTCCGGATCTCCTCCACCTTGAAGGTGAATAAGCTGCTGAAGCA
GTCGAGGGCGGCCTTTTTCGAGGAACACAGCAGGTCTCTATCTGAAGGAG
AAGGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGCGGCAGCAGGAGGGGGG
GGAGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCCCGCTCGCCGCCACCGT
CTGCATCACTTCGGAGCTGGCCTTCCCTGAAGCGATAGCGCTGGTCAG GT
AAATAAAAAAAACAGCGTTGGGTGCGGTAGATCCTTGAGGATGGTCTATG
GATCACTCTGCGGTCATTCAGGTATCGCACGCAGGAGGAGCCCAGATGGC
TATACGTCGGTAGCTGTTTAAAGGTGGAAACCCACGGCAGACAGCGATTG
ACAGATGCTGGTATTTATGCGTCTGAGTTCAGCAGACAGCATATTCGGCG
CGCAAAGCATCGAAAGAAAGCTACTCTTACCTCACACAAGCGATGCTTGG
TCAATCAAGACAGGCCACGATGATGTATGCAGCGATGTTATGGTGTGAAC
CGAAGCGCGTCCGTATTTAACGCGCTCGGCCGGGAACGTGCCTATGTATC
CCTCCTGCAGGTGGTTCTGCTCGCAGTTTGTGGCGAGCCTTTGCGAGGTG
GCCAGGGTAGCCGAGGGCGAGGCTAGAAAGCTGGAAGGGGAGGGCAAAAG
CAGACGAAAATCTCGCGTCGGCAGC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig551:20932..22556-
>mRNA_L-elsbetiae_contig551.13789.1 ID=mRNA_L-elsbetiae_contig551.13789.1|Name=mRNA_L-elsbetiae_contig551.13789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20932..22556- (Laminarionema elsbetiae ELsaHSoW15) GTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCGTCCGACCAGGGCCT GGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGAAGGGGGCGCCAGAG TCAACATCGGCGACGTTGGAGGGCGGCTAGGAGGAAGCCAGCGACAACCG TCCGACCAGGGCCTGGAGAAGCTCGAGCGGGCGAAGGGTTTGTTGCTCGA AGGGGGCGCCAGAGTCAACATCGGCGACGTGAATAAGCTGCTGAAGCAGT CGAGGGCGGCCTTTTTCGAGGAACACAGCAGGTCTCTATCTGAAGGAGAA GGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGCGGCAGCAGGAGGGGGGGG AGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCCCGCTCGCCGCCACCGTCT GCATCACTTCGGAGCTGGCCTTCCCTGAAGCGATAGCGCTGGTCAGGTGA ATAAGCTGCTGAAGCAGTCGAGGGCGGCCTTTTTCGAGGAACACAGCAGG TCTCTATCTGAAGGAGAAGGAGCAGCCGGAGCAGCAGCAGCAGCAGTAGC GGCAGCAGGAGGGGGGGGAGAAGCGGTGGCCGAGCCTTGGAGAGGCGCCC CGCTCGCCGCCACCGTCTGCATCACTTCGGAGCTGGCCTTCCCTGAAGCG ATAGCGCTGGTCAGGTGGTTCTGCTCGCAGTTTGTGGCGAGCCTTTGCGA GGTGGCCAGGGTAGCCGAGGGCGAGGCTAGAAAGCTGGAAGGGGAGGGCA AAAGCAGACGAAAATCTCGCGTCGGCAGCGTGGTTCTGCTCGCAGTTTGT GGCGAGCCTTTGCGAGGTGGCCAGGGTAGCCGAGGGCGAGGCTAGAAAGC TGGAAGGGGAGGGCAAAAGCAGACGAAAATCTCGCGTCGGCAGC back to top