mRNA_L-elsbetiae_contig551.13788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig551.13788.1
Unique NamemRNA_L-elsbetiae_contig551.13788.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig551.13788.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.530e-19
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:   58 RAARLLRVLITSFNAFLRHCSR-SRMYSKTSHVHVLDIAVSLTRKAIEKLAAECSADPAAGTAAARLRGLTAKA 276
            RA RLLRVLI+SFNAFL   S  S M+S  +HV VLDIAVSL RKAIE+L+ ECSADP+ G AAARLRGLTA A
Sbjct:  195 RATRLLRVLISSFNAFLEQSSPGSGMFSTAAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAA 268
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BLAST of mRNA_L-elsbetiae_contig551.13788.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 3.400e-19
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:   49 GMGRAARLLRVLITSFNAFLRHCSR-SRMYSKTSHVHVLDIAVSLTRKAIEKLAAECSADPAAGTAAARLRGLTAKA 276
            G  RA RLLRVL+ SFNAFL+  S  S M+S ++HV VLDIAVSL RKAIE+L+ ECSADP+ G AAARLRGLTA A
Sbjct:  190 GAERAIRLLRVLLGSFNAFLQQSSLGSGMFSTSAHVRVLDIAVSLARKAIERLSRECSADPSVGKAAARLRGLTAAA 266
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig551.13788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP83_9PHAE2.530e-1971.62EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRR3_ECTSI3.400e-1968.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig551contigL-elsbetiae_contig551:20220..20916 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.8641965-CDS-L-elsbetiae_contig551:20221..203541622816579.8641965-CDS-L-elsbetiae_contig551:20221..20354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20222..20354 -
1691683661.3132224-CDS-L-elsbetiae_contig551:20221..203541691683661.3132224-CDS-L-elsbetiae_contig551:20221..20354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20222..20354 -
1622816579.8746135-CDS-L-elsbetiae_contig551:20773..209161622816579.8746135-CDS-L-elsbetiae_contig551:20773..20916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20774..20916 -
1691683661.323656-CDS-L-elsbetiae_contig551:20773..209161691683661.323656-CDS-L-elsbetiae_contig551:20773..20916Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 20774..20916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig551.13788.1prot_L-elsbetiae_contig551.13788.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig551 20222..20916 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig551.13788.1

>prot_L-elsbetiae_contig551.13788.1 ID=prot_L-elsbetiae_contig551.13788.1|Name=mRNA_L-elsbetiae_contig551.13788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
STSTSTSAAADAGASAGMGRAARLLRVLITSFNAFLRHCSRSRMYSKTSH
VHVLDIAVSLTRKAIEKLAAECSADPAAGTAAARLRGLTAKA
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mRNA from alignment at L-elsbetiae_contig551:20220..20916-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig551.13788.1 ID=mRNA_L-elsbetiae_contig551.13788.1|Name=mRNA_L-elsbetiae_contig551.13788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=697bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20220..20916- (Laminarionema elsbetiae ELsaHSoW15)
AGTACCAGCACCAGCACCAGCGCGGCGGCCGACGCAGGGGCCAGCGCAGG
CATGGGCAGGGCCGCCCGGCTGCTGCGCGTCCTGATCACATCCTTTAACG
CGTTCCTTCGGCACTGTTCTCGGAGCCGAATGTACAGCAAGACGTGAGAA
AAGCCTCCGATATTGTTTGTTTTCTCTATGTGGTACTTGTGTGTGTGCGT
GTGTGCACCCGCACAGGAACGACTCGCTCTTGGTATACGCTGGGATCCAT
GCCATGTTTTTCTTGCGCTATTAATAGTTTCGCTGCTGCTGCCGCTTCTC
CTGCTGAACGAAGCGCTGGTTCTGTGTACACGAACGGTGGATGAATAGTA
TATGTAAGAAACTCAGTAACCAACAGCCTCTCGCTCTTTGTGACCAAGGG
TGGCACCGTCGGCCGAAAGCACGAGCACGACCATAGCGCCACCCACAGCC
AGAACCCCCGCACGAGTAGCCCAGCCTTGTCTACCTGAAACTATTGCCCG
GCGTGTGTGCTTGCGCTGCCGCCGCTTACTGATGTATCCCCCGCGTGTTT
GTGTGTGGCTAGGAGCCACGTGCACGTGCTGGACATCGCTGTAAGTCTCA
CGAGAAAGGCGATCGAGAAGCTGGCAGCAGAGTGCTCCGCGGACCCGGCG
GCGGGCACGGCGGCGGCAAGGCTGAGGGGACTCACCGCCAAGGCATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig551:20220..20916-

>mRNA_L-elsbetiae_contig551.13788.1 ID=mRNA_L-elsbetiae_contig551.13788.1|Name=mRNA_L-elsbetiae_contig551.13788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig551:20220..20916- (Laminarionema elsbetiae ELsaHSoW15)
AGTACCAGCACCAGCACCAGCGCGGCGGCCGACGCAGGGGCCAGCGCAGG
CATGGGCAGGGCCGCCCGGCTGCTGCGCGTCCTGATCACATCCTTTAACG
CGTTCCTTCGGCACTGTTCTCGGAGCCGAATGTACAGCAAGACAGTACCA
GCACCAGCACCAGCGCGGCGGCCGACGCAGGGGCCAGCGCAGGCATGGGC
AGGGCCGCCCGGCTGCTGCGCGTCCTGATCACATCCTTTAACGCGTTCCT
TCGGCACTGTTCTCGGAGCCGAATGTACAGCAAGACGAGCCACGTGCACG
TGCTGGACATCGCTGTAAGTCTCACGAGAAAGGCGATCGAGAAGCTGGCA
GCAGAGTGCTCCGCGGACCCGGCGGCGGGCACGGCGGCGGCAAGGCTGAG
GGGACTCACCGCCAAGGCAGAGCCACGTGCACGTGCTGGACATCGCTGTA
AGTCTCACGAGAAAGGCGATCGAGAAGCTGGCAGCAGAGTGCTCCGCGGA
CCCGGCGGCGGGCACGGCGGCGGCAAGGCTGAGGGGACTCACCGCCAAGG
CA
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