mRNA_L-elsbetiae_contig551.13787.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig551.13787.1
Unique NamemRNA_L-elsbetiae_contig551.13787.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig551.13787.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.140e-21
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1 
Query:    1 PSFDNLKRVGNRDVEKLLFCISGGKAKKDVQYLRLPGNCVEAIGALRSVAVAVPQMYHIIADAFAAAVKCLTLGENNAGPEG 246
            P+ DNL R+G +DV+KLL C+SGG+AKKD  YL LP  C+EAIGALR VA   P+ Y  IA+AFAAA++C+T G    GPEG
Sbjct:  308 PNSDNLDRMGKKDVDKLLMCVSGGEAKKDEVYLSLPCICIEAIGALRRVATLAPRTYATIAEAFAAALRCMTRGAVG-GPEG 388
[Close]
BLAST of mRNA_L-elsbetiae_contig551.13787.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 5.180e-18
Identity = 49/87 (56.32%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 PSFDNLKRVGNRDVEKLLFCISGGKAKKDVQYLRLPGNCVEAIGALRS-----VAVAVPQMYHIIADAFAAAVKCLTLGENNAGPEG 246
            P+ DNL R+G +DV+KLL CISGG+ KKD  YL  P  CVEAIGALR      VA   P  Y  IA+AFAAA++C+T G    GPEG
Sbjct:  297 PNSDNLDRMGKKDVDKLLVCISGGEGKKDEAYLSPPCICVEAIGALRRQEKSVVATLAPPTYATIAEAFAAALRCMTRGAVG-GPEG 382
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig551.13787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRR3_ECTSI1.140e-2159.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP83_9PHAE5.180e-1856.32EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig551contigL-elsbetiae_contig551:18807..19470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.8110523-CDS-L-elsbetiae_contig551:18807..189101622816579.8110523-CDS-L-elsbetiae_contig551:18807..18910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 18808..18910 -
1691683661.2933035-CDS-L-elsbetiae_contig551:18807..189101691683661.2933035-CDS-L-elsbetiae_contig551:18807..18910Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 18808..18910 -
1622816579.8292027-CDS-L-elsbetiae_contig551:19327..194701622816579.8292027-CDS-L-elsbetiae_contig551:19327..19470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 19328..19470 -
1691683661.303481-CDS-L-elsbetiae_contig551:19327..194701691683661.303481-CDS-L-elsbetiae_contig551:19327..19470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 19328..19470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig551.13787.1prot_L-elsbetiae_contig551.13787.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig551 18808..19470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig551.13787.1

>prot_L-elsbetiae_contig551.13787.1 ID=prot_L-elsbetiae_contig551.13787.1|Name=mRNA_L-elsbetiae_contig551.13787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
PSFDNLKRVGNRDVEKLLFCISGGKAKKDVQYLRLPGNCVEAIGALRSVA
VAVPQMYHIIADAFAAAVKCLTLGENNAGPEG
back to top

mRNA from alignment at L-elsbetiae_contig551:18807..19470-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig551.13787.1 ID=mRNA_L-elsbetiae_contig551.13787.1|Name=mRNA_L-elsbetiae_contig551.13787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=664bp|location=Sequence derived from alignment at L-elsbetiae_contig551:18807..19470- (Laminarionema elsbetiae ELsaHSoW15)
CCGAGCTTCGACAACCTCAAGAGAGTTGGGAACAGAGATGTTGAAAAGCT
TCTGTTCTGCATCTCGGGGGGCAAAGCCAAGAAAGACGTGCAGTACCTGC
GGCTTCCAGGCAACTGCGTCGAGGCGATAGGAGCTCTTCGGAGGTAAGGG
GCGGACGGTGGCGCGGGGGGTAGAGGAGGCACTCAAGGCGTTTTTTTTTC
TTCGTGCTGTGGCCATTGACCACGAGCCCTCAGTAAGTTCTCTCTAGGCA
GGGCAGGTTTGGGAGGCAGGTCAAGTTGGCGAGAGAGAGAAAGGGAGATT
TGGGATTTGGGCTTGGCCGCCGTGACAACCACAGAGGTTGTGCGATTCGG
GGGCTCTCTCCTCTTTGGAGGCGAATTGGTGGTGATAGATTTGTCGCGGG
TTTGATACCCCAACCCGCCTCTCCCTCAATCTATCTCTCTGAGACCCTCC
GCCTGCGGCCTGTGCCTGTGTATGGCCGCTTTGTTCATGGTGTGCTCCTC
CTCCCCTCCACCCTCCCTGCCTCCCTGCCTACCTGCCTGCCTCTCCCCCC
AAAAATCAAGTGTTGCGGTAGCGGTGCCGCAGATGTACCATATCATAGCC
GACGCCTTCGCCGCGGCAGTGAAGTGCCTCACCCTGGGAGAGAACAACGC
AGGCCCGGAGGGGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig551:18807..19470-

>mRNA_L-elsbetiae_contig551.13787.1 ID=mRNA_L-elsbetiae_contig551.13787.1|Name=mRNA_L-elsbetiae_contig551.13787.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig551:18807..19470- (Laminarionema elsbetiae ELsaHSoW15)
CCGAGCTTCGACAACCTCAAGAGAGTTGGGAACAGAGATGTTGAAAAGCT
TCTGTTCTGCATCTCGGGGGGCAAAGCCAAGAAAGACGTGCAGTACCTGC
GGCTTCCAGGCAACTGCGTCGAGGCGATAGGAGCTCTTCGGAGCCGAGCT
TCGACAACCTCAAGAGAGTTGGGAACAGAGATGTTGAAAAGCTTCTGTTC
TGCATCTCGGGGGGCAAAGCCAAGAAAGACGTGCAGTACCTGCGGCTTCC
AGGCAACTGCGTCGAGGCGATAGGAGCTCTTCGGAGTGTTGCGGTAGCGG
TGCCGCAGATGTACCATATCATAGCCGACGCCTTCGCCGCGGCAGTGAAG
TGCCTCACCCTGGGAGAGAACAACGCAGGCCCGGAGGGGTGTTGCGGTAG
CGGTGCCGCAGATGTACCATATCATAGCCGACGCCTTCGCCGCGGCAGTG
AAGTGCCTCACCCTGGGAGAGAACAACGCAGGCCCGGAGGGG
back to top