mRNA_L-elsbetiae_contig551.13786.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig551.13786.1
Unique NamemRNA_L-elsbetiae_contig551.13786.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig551.13786.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 7.310e-15
Identity = 42/69 (60.87%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GEWGGRPALRDAAVRHTLFACSSHLADSLGRS----PDASCLEAHGRLVSALKVCYVMRGFVASSPPRP 195
            GEW  RPAL DA VRHTLFAC  HLA+ L  +    PD S L  HG+LVSALK C+VMRGFV    P P
Sbjct:  382 GEWSRRPALNDANVRHTLFACCCHLAEGLPAATSPPPDDSRLRGHGKLVSALKACHVMRGFVTDGHPLP 450
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BLAST of mRNA_L-elsbetiae_contig551.13786.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.770e-13
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:    1 GEWGGRPALRDAAVRHTLFACSSHLADSLGRS----PDASCLEAHGRLVSALKVCYVMRGFVASSPPRP 195
            GEW  RPAL DA VRHTLFAC  +LA+ L  +    PD S L   G+LVSALK C+VMRGFVA   P P
Sbjct:  388 GEWTRRPALNDANVRHTLFACCCNLAEGLPAAACPPPDDSRLRGRGKLVSALKACHVMRGFVADGHPLP 456
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig551.13786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP83_9PHAE7.310e-1560.87EAF domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRR3_ECTSI3.770e-1359.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig551contigL-elsbetiae_contig551:17597..18759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size546
Cds size546
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816579.5481725-CDS-L-elsbetiae_contig551:17596..180971622816579.5481725-CDS-L-elsbetiae_contig551:17596..18097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 17597..18097 -
1691683661.1274023-CDS-L-elsbetiae_contig551:17596..180971691683661.1274023-CDS-L-elsbetiae_contig551:17596..18097Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 17597..18097 -
1622816579.563946-CDS-L-elsbetiae_contig551:18714..187591622816579.563946-CDS-L-elsbetiae_contig551:18714..18759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 18715..18759 -
1691683661.1365433-CDS-L-elsbetiae_contig551:18714..187591691683661.1365433-CDS-L-elsbetiae_contig551:18714..18759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig551 18715..18759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig551.13786.1prot_L-elsbetiae_contig551.13786.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig551 17597..18759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig551.13786.1

>prot_L-elsbetiae_contig551.13786.1 ID=prot_L-elsbetiae_contig551.13786.1|Name=mRNA_L-elsbetiae_contig551.13786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
GEWGGRPALRDAAVRHTLFACSSHLADSLGRSPDASCLEAHGRLVSALKV
CYVMRGFVASSPPRPLPLPLPLAADADGAKASAPVAAVGEDEVAADRPSP
AKRSKGYPAARTKDKDVPGTKRKGAAGQESAVAASAAAPAAAVPAPASLQ
PPPSPPPGKDTGAPAQAAAREGGASRGGAHAA
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mRNA from alignment at L-elsbetiae_contig551:17597..18759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig551.13786.1 ID=mRNA_L-elsbetiae_contig551.13786.1|Name=mRNA_L-elsbetiae_contig551.13786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1163bp|location=Sequence derived from alignment at L-elsbetiae_contig551:17597..18759- (Laminarionema elsbetiae ELsaHSoW15)
GGGGAATGGGGCGGCCGCCCGGCGCTGAGGGACGCCGCCGTTCGGGTGAG
TGGAGCGCGGCTTTGCTCCAAACGCCTCTTGCGATAAATTAGCGTGACGG
GGCCTTGTTTCTGCAGATGGTGTGTGGCATCAGAATCGCTCCACAAAACA
ATGACTATTTAGTGTCTTCTCTCTCGTTTTTCGGTCGAGTCCCGAGTAGA
TTTGTGCGTGTCCTGCGTGCGTGTGTCCTCAACCACTGCACTGCACCGGG
GAAGAAACGAGACGAGACAAGCGATCGACCGGCGCCGGCGCCAGGCTCTC
ACGGTTGGCCCCGCTGTGCGTCAAACCCATCGCACCTGTCGTATCTCACA
CCCACGGCACACGCGTGTGTGTGTCAGGTTTTAGCGCCGACTTCGTCCCC
ATCGGGGCCGTCTCCCTCCCCTATCCATCCCGTCGGTGGACATGGCACAA
CTGTTTTTTTTTTTTCGTGCATGCGGGACCTGCCTGAATCGTGTTGCTAA
CCGATCACACCACCCTCCTTGCACTCGTGCTCTCTTTTTTTGGCTTCCGC
CGGCCGTGCGTGTTTGTGTGTGATGTGTGCGCGTGCGCGGGTGGGTGCCC
TTTCGGTCTCGGCTACGGTGCCCCCCTCTTCGCCTGCTTGCGGCATCGCG
CTCTCTCTTCAGCACACGCTGTTCGCGTGCTCCTCCCACCTGGCCGACAG
CTTGGGCAGGTCCCCGGACGCGAGCTGTCTCGAGGCGCACGGCAGGCTCG
TTTCCGCCCTGAAAGTATGCTACGTCATGCGGGGCTTCGTCGCCAGCAGC
CCCCCCCGCCCTCTCCCTCTCCCTCTCCCTCTTGCCGCCGACGCCGACGG
TGCCAAGGCGAGCGCGCCTGTTGCCGCCGTCGGAGAAGATGAGGTCGCAG
CTGACCGTCCCTCCCCGGCGAAACGGTCGAAGGGGTACCCGGCAGCTAGA
ACAAAGGACAAAGACGTGCCGGGGACAAAGCGGAAGGGGGCAGCGGGGCA
GGAATCCGCCGTCGCGGCTTCGGCAGCAGCGCCAGCAGCAGCAGTTCCTG
CACCAGCCTCCCTGCAACCGCCACCATCACCACCACCAGGGAAGGACACC
GGAGCACCGGCGCAAGCAGCAGCACGGGAAGGTGGCGCGAGCAGGGGCGG
GGCTCACGCGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig551:17597..18759-

>mRNA_L-elsbetiae_contig551.13786.1 ID=mRNA_L-elsbetiae_contig551.13786.1|Name=mRNA_L-elsbetiae_contig551.13786.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig551:17597..18759- (Laminarionema elsbetiae ELsaHSoW15)
GGGGAATGGGGCGGCCGCCCGGCGCTGAGGGACGCCGCCGTTCGGGGGGA
ATGGGGCGGCCGCCCGGCGCTGAGGGACGCCGCCGTTCGGCACACGCTGT
TCGCGTGCTCCTCCCACCTGGCCGACAGCTTGGGCAGGTCCCCGGACGCG
AGCTGTCTCGAGGCGCACGGCAGGCTCGTTTCCGCCCTGAAAGTATGCTA
CGTCATGCGGGGCTTCGTCGCCAGCAGCCCCCCCCGCCCTCTCCCTCTCC
CTCTCCCTCTTGCCGCCGACGCCGACGGTGCCAAGGCGAGCGCGCCTGTT
GCCGCCGTCGGAGAAGATGAGGTCGCAGCTGACCGTCCCTCCCCGGCGAA
ACGGTCGAAGGGGTACCCGGCAGCTAGAACAAAGGACAAAGACGTGCCGG
GGACAAAGCGGAAGGGGGCAGCGGGGCAGGAATCCGCCGTCGCGGCTTCG
GCAGCAGCGCCAGCAGCAGCAGTTCCTGCACCAGCCTCCCTGCAACCGCC
ACCATCACCACCACCAGGGAAGGACACCGGAGCACCGGCGCAAGCAGCAG
CACGGGAAGGTGGCGCGAGCAGGGGCGGGGCTCACGCGGCCCACACGCTG
TTCGCGTGCTCCTCCCACCTGGCCGACAGCTTGGGCAGGTCCCCGGACGC
GAGCTGTCTCGAGGCGCACGGCAGGCTCGTTTCCGCCCTGAAAGTATGCT
ACGTCATGCGGGGCTTCGTCGCCAGCAGCCCCCCCCGCCCTCTCCCTCTC
CCTCTCCCTCTTGCCGCCGACGCCGACGGTGCCAAGGCGAGCGCGCCTGT
TGCCGCCGTCGGAGAAGATGAGGTCGCAGCTGACCGTCCCTCCCCGGCGA
AACGGTCGAAGGGGTACCCGGCAGCTAGAACAAAGGACAAAGACGTGCCG
GGGACAAAGCGGAAGGGGGCAGCGGGGCAGGAATCCGCCGTCGCGGCTTC
GGCAGCAGCGCCAGCAGCAGCAGTTCCTGCACCAGCCTCCCTGCAACCGC
CACCATCACCACCACCAGGGAAGGACACCGGAGCACCGGCGCAAGCAGCA
GCACGGGAAGGTGGCGCGAGCAGGGGCGGGGCTCACGCGGCC
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