prot_L-elsbetiae_contig551.13785.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig551.13785.1
Unique Name	prot_L-elsbetiae_contig551.13785.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	584

Homology

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BLAST of mRNA_L-elsbetiae_contig551.13785.1 vs. uniprot
Match: A0A6H5JP83_9PHAE (EAF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP83_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.160e-60
Identity = 135/236 (57.20%), Postives = 157/236 (66.53%), Query Frame = 0

Query:  272 AQSSLTATKAYPPLKSAPEKEPKWRDGDRYEVVLGDSFYASSGNSSXXXXXXD-------------------GPFGQEQYVHLKYDFVPARTNLDAPAKLRQRPITAAEGGWKGRWDGRGGDXXXXXXXXXXXXXXXXRWAAELEYESRDPSNCEPVRFSGDASRAQDVECVLVFDGKQFVMDRVSVVGGLKNMQEFTDPGAKGAGEPTPEAAMAKKKKSIKDTRSMKEREEKKKA 488
            A ++  ATK+YPPL++APEK+P WR+G+RY VVLG+SFY S     XXXXXX                    G     QYVHLKYDFVP RTNLD PA LRQRP+T  EG W+G      GD                RWAAE+EYESRDPSN EPVRF+GDA RAQDVECVLVFDG+QFVMDRV+VVGGLKN+QEF    A G+G PTPEA +AK+KK IK   S K +EEK++A
Sbjct:  843 AAAAAPATKSYPPLQTAPEKKPAWREGERYGVVLGESFYGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGENNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWRGXXXXXXGDVGGGGQQQ--------RWAAEMEYESRDPSNPEPVRFTGDAVRAQDVECVLVFDGQQFVMDRVAVVGGLKNVQEFDGLAAGGSGGPTPEATLAKRKKDIK---SKKIKEEKQRA 1067

[Close]

BLAST of mRNA_L-elsbetiae_contig551.13785.1 vs. uniprot
Match: D7FRR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR3_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.940e-35
Identity = 85/169 (50.30%), Postives = 96/169 (56.80%), Query Frame = 0

Query:  269 AKKAQSSLTATKAYPPLKSAPEKEPKWRDGDRYEVVLGDSFYASSG--------------------NSSXXXXXXDGPFGQEQYVHLKYDFVPARTNLDAPAKLRQRPITAAEGGWKGRWDGRGGDXXXXXXXXXXXXXXXXRWAAELEYESRDPSNCEPVRFSGDASR 417
            A  + ++  ATK+YPPL++APEK P WR+G+RY VVLGDSFY S                                G     QYVHLKYDFVP RTNLD PA LRQRP+T  EG WKGR  G GGD                RWAAE+EYESRDPSN EPVRF+GDA R
Sbjct:  601 AMPSAAAAPATKSYPPLQTAPEKMPAWREGERYGVVLGDSFYGSGXXXXXXXXXXXXXXXXXXXXXRRGLVGDDDTGESNPGQYVHLKYDFVPGRTNLDVPATLRQRPLTENEGRWKGRGSGTGGDVVGGGQQQ--------RWAAEVEYESRDPSNPEPVRFTGDAVR 761

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig551.13785.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig551.13785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JP83_9PHAE	2.160e-60	57.20	EAF domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D7FRR3_ECTSI	1.940e-35	50.30	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 473..552
IPR019194	Transcription elognation factor Eaf, N-terminal	PFAM	PF09816	EAF	coord: 301..439 e-value: 2.4E-9 score: 37.5

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig551	contig	L-elsbetiae_contig551:14302..17560 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig551.13785.1	mRNA_L-elsbetiae_contig551.13785.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig551 13976..17583 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig551.13785.1 ID=prot_L-elsbetiae_contig551.13785.1|Name=mRNA_L-elsbetiae_contig551.13785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=584bp
MSGGGKASGGSGGGIGRKRPRSPSPLQEEGRGGASRTDRSTRDPAPPPAR
PPQLPPTSSNTTIAAVDLPQPTRAAAVSATTTSGAPSLAAPQSGSTSPAV
SSHTVAVGTGAAAEEEASVAPPSAPSAENPPPLPPSPLPLPLHSSLAEPC
TSRALDSPAAAGDGGEENPALMEALFGDEDEDGDGDGDGDGDDDDDEHSA
EAEPADAGEEMTPDAAKVAVAAAALAAEVAAATVNAGYPNSEERTTSLAL
AAAAAATPATATATATVAAKKAQSSLTATKAYPPLKSAPEKEPKWRDGDR
YEVVLGDSFYASSGNSSGGGSSGDGPFGQEQYVHLKYDFVPARTNLDAPA
KLRQRPITAAEGGWKGRWDGRGGDGGGSGGAGQQQQQQQQRWAAELEYES
RDPSNCEPVRFSGDASRAQDVECVLVFDGKQFVMDRVSVVGGLKNMQEFT
DPGAKGAGEPTPEAAMAKKKKSIKDTRSMKEREEKKKAKAAEKAQEMAAK
AAAKAAAKEAKATARAAAKEAKAAAKNAAKAAAKEEKTLAKAAAKLAEAT
ANAAARSAPRQQSNGRGGRHGGACGGATGNILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019194	Tscrpt_elong_fac_Eaf_N