mRNA_L-elsbetiae_contig5503.13779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5503.13779.1
Unique NamemRNA_L-elsbetiae_contig5503.13779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.070e-14
Identity = 49/101 (48.51%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:  526 RNKRSPQSGSFSVAWGXXXXXXXXXXXXXXXXIT------TPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCAGS----ADGLILPLDVSEAS 798
            R+  SP  GSFS+AW                 +        PG  G +   TERSFFSTASSEPRYHCLR GLSSP WS AGS    ADG ++P+D+S+AS
Sbjct: 1531 RSMTSPPGGSFSIAWSNGGTDAVTPANSTSVDVAGGSGLIAPGVVGVDKGDTERSFFSTASSEPRYHCLRSGLSSPAWSNAGSWTGSADG-VMPVDMSDAS 1630
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BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Match: A0A6H5L985_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L985_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 4.960e-12
Identity = 47/101 (46.53%), Postives = 54/101 (53.47%), Query Frame = 1 
Query:  538 SPQSGSFSVAWGXXXXXXXXXXXXXXXXIT------TPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCAGS----ADGLILPLDVSEASSGEE 810
            SP  GSFS+AW                 +        PG  G       R FFSTASSEPRYHCLR G SSP WS AGS    ADG ++P+D+S+AS GEE
Sbjct:    3 SPPGGSFSIAWWNGSSDPVKPVKSTQVGMAGGSGLIAPGVVGVGGGDIARGFFSTASSEPRYHCLRSGFSSPAWSNAGSWVGSADG-VMPVDMSDAS-GEE 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5503.13779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7S3_9PHAE4.070e-1448.51PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L985_9PHAE4.960e-1246.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5503contigL-elsbetiae_contig5503:11099..11959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size861
Cds size861
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.6504247-CDS-L-elsbetiae_contig5503:11098..119591622816578.6504247-CDS-L-elsbetiae_contig5503:11098..11959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5503 11099..11959 -
1691683660.6423097-CDS-L-elsbetiae_contig5503:11098..119591691683660.6423097-CDS-L-elsbetiae_contig5503:11098..11959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5503 11099..11959 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5503.13779.1prot_L-elsbetiae_contig5503.13779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5503 11099..11959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5503.13779.1

>prot_L-elsbetiae_contig5503.13779.1 ID=prot_L-elsbetiae_contig5503.13779.1|Name=mRNA_L-elsbetiae_contig5503.13779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=287bp
PSPLCAQTADAAAATRSCATSSCARCDTTGSRQASGGCGDDNLTDLTIQA
PTPDMRGGSGGSGSGWGSPPGSDASGGESGRWRRPRSASRHGQYRDRGGG
GGGNGGGGGGNGGGGGAGFLRFGVASPDGSSNTALESGGGERPAHRRERG
RSRGGVSSASGRSSPPPPSPASSQARNKRSPQSGSFSVAWGSSSGGGGGG
GGGGGGGITTPGSTGAESCGTERSFFSTASSEPRYHCLRPGLSSPTWSCA
GSADGLILPLDVSEASSGEEGGDGGGGGQDDTKDGAG
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mRNA from alignment at L-elsbetiae_contig5503:11099..11959-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5503.13779.1 ID=mRNA_L-elsbetiae_contig5503.13779.1|Name=mRNA_L-elsbetiae_contig5503.13779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=861bp|location=Sequence derived from alignment at L-elsbetiae_contig5503:11099..11959- (Laminarionema elsbetiae ELsaHSoW15)
CCGTCCCCGCTCTGCGCACAGACCGCCGACGCCGCGGCTGCCACAAGAAG
CTGTGCCACCTCGTCCTGCGCTCGCTGTGACACAACAGGCAGCCGCCAGG
CCAGCGGCGGCTGCGGCGACGATAACTTGACCGATCTCACGATACAGGCT
CCGACCCCAGACATGCGAGGCGGGAGCGGCGGCAGCGGGAGCGGGTGGGG
CTCCCCGCCGGGCAGCGATGCCAGCGGCGGCGAGAGCGGGCGGTGGCGGC
GCCCGCGCTCTGCTTCTCGACACGGGCAGTACCGCGATCGCGGCGGCGGC
GGTGGCGGCAACGGCGGTGGCGGCGGCGGCAACGGCGGCGGCGGCGGCGC
AGGCTTTCTCCGGTTCGGGGTAGCCTCCCCGGACGGCAGTAGCAACACCG
CCCTCGAGAGCGGCGGCGGCGAGAGGCCCGCGCACAGACGCGAACGGGGC
CGGTCACGGGGAGGGGTTTCAAGCGCTAGCGGGAGGTCGTCTCCCCCGCC
CCCGTCCCCAGCCTCGTCCCAGGCCCGCAACAAGAGGAGCCCGCAATCGG
GGAGCTTCAGCGTGGCGTGGGGCAGCAGCAGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGAGGGATCACCACCCCGGGAAGCACCGGCGCGGA
GAGCTGCGGCACGGAGCGCAGCTTTTTCAGCACGGCGTCCAGCGAGCCGC
GGTATCACTGTCTCCGGCCCGGGCTGTCGAGCCCCACCTGGAGCTGCGCC
GGCAGCGCGGACGGGTTGATACTGCCGCTGGACGTGTCCGAGGCGTCTTC
GGGGGAAGAGGGCGGCGATGGTGGCGGAGGGGGGCAGGATGACACTAAAG
ACGGCGCTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5503:11099..11959-

>mRNA_L-elsbetiae_contig5503.13779.1 ID=mRNA_L-elsbetiae_contig5503.13779.1|Name=mRNA_L-elsbetiae_contig5503.13779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1722bp|location=Sequence derived from alignment at L-elsbetiae_contig5503:11099..11959- (Laminarionema elsbetiae ELsaHSoW15)
CCGTCCCCGCTCTGCGCACAGACCGCCGACGCCGCGGCTGCCACAAGAAG
CTGTGCCACCTCGTCCTGCGCTCGCTGTGACACAACAGGCAGCCGCCAGG
CCAGCGGCGGCTGCGGCGACGATAACTTGACCGATCTCACGATACAGGCT
CCGACCCCAGACATGCGAGGCGGGAGCGGCGGCAGCGGGAGCGGGTGGGG
CTCCCCGCCGGGCAGCGATGCCAGCGGCGGCGAGAGCGGGCGGTGGCGGC
GCCCGCGCTCTGCTTCTCGACACGGGCAGTACCGCGATCGCGGCGGCGGC
GGTGGCGGCAACGGCGGTGGCGGCGGCGGCAACGGCGGCGGCGGCGGCGC
AGGCTTTCTCCGGTTCGGGGTAGCCTCCCCGGACGGCAGTAGCAACACCG
CCCTCGAGAGCGGCGGCGGCGAGAGGCCCGCGCACAGACGCGAACGGGGC
CGGTCACGGGGAGGGGTTTCAAGCGCTAGCGGGAGGTCGTCTCCCCCGCC
CCCGTCCCCAGCCTCGTCCCAGGCCCGCAACAAGAGGAGCCCGCAATCGG
GGAGCTTCAGCGTGGCGTGGGGCAGCAGCAGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCGGCGGCGGAGGGATCACCACCCCGGGAAGCACCGGCGCGGA
GAGCTGCGGCACGGAGCGCAGCTTTTTCAGCACGGCGTCCAGCGAGCCGC
GGTATCACTGTCTCCGGCCCGGGCTGTCGAGCCCCACCTGGAGCTGCGCC
GGCAGCGCGGACGGGTTGATACTGCCGCTGGACGTGTCCGAGGCGTCTTC
GGGGGAAGAGGGCGGCGATGGTGGCGGAGGGGGGCAGGATGACACTAAAG
ACGGCGCTGGGCCGTCCCCGCTCTGCGCACAGACCGCCGACGCCGCGGCT
GCCACAAGAAGCTGTGCCACCTCGTCCTGCGCTCGCTGTGACACAACAGG
CAGCCGCCAGGCCAGCGGCGGCTGCGGCGACGATAACTTGACCGATCTCA
CGATACAGGCTCCGACCCCAGACATGCGAGGCGGGAGCGGCGGCAGCGGG
AGCGGGTGGGGCTCCCCGCCGGGCAGCGATGCCAGCGGCGGCGAGAGCGG
GCGGTGGCGGCGCCCGCGCTCTGCTTCTCGACACGGGCAGTACCGCGATC
GCGGCGGCGGCGGTGGCGGCAACGGCGGTGGCGGCGGCGGCAACGGCGGC
GGCGGCGGCGCAGGCTTTCTCCGGTTCGGGGTAGCCTCCCCGGACGGCAG
TAGCAACACCGCCCTCGAGAGCGGCGGCGGCGAGAGGCCCGCGCACAGAC
GCGAACGGGGCCGGTCACGGGGAGGGGTTTCAAGCGCTAGCGGGAGGTCG
TCTCCCCCGCCCCCGTCCCCAGCCTCGTCCCAGGCCCGCAACAAGAGGAG
CCCGCAATCGGGGAGCTTCAGCGTGGCGTGGGGCAGCAGCAGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGAGGGATCACCACCCCGGGAAGC
ACCGGCGCGGAGAGCTGCGGCACGGAGCGCAGCTTTTTCAGCACGGCGTC
CAGCGAGCCGCGGTATCACTGTCTCCGGCCCGGGCTGTCGAGCCCCACCT
GGAGCTGCGCCGGCAGCGCGGACGGGTTGATACTGCCGCTGGACGTGTCC
GAGGCGTCTTCGGGGGAAGAGGGCGGCGATGGTGGCGGAGGGGGGCAGGA
TGACACTAAAGACGGCGCTGGG
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