mRNA_L-elsbetiae_contig5500.13775.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5500.13775.1
Unique NamemRNA_L-elsbetiae_contig5500.13775.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: A0A6H5JCG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG4_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.760e-83
Identity = 125/141 (88.65%), Postives = 133/141 (94.33%), Query Frame = 1 
Query:    1 MNRLVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKISGASKKR 423
            MNRLVRFGAEALKPQRVAGA KW++PRVSRRKANVLR++A+ DGSFGS+VID DTGKAIGGWDPAWDIF  PAPRPL PPKLHKN+RDRA RADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLK SGA+KKR
Sbjct:   68 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSIVIDEDTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKNSGAAKKR 208
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: D8LE47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE47_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 2.150e-83
Identity = 123/141 (87.23%), Postives = 133/141 (94.33%), Query Frame = 1 
Query:    1 MNRLVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKISGASKKR 423
            MNRLVRFGAEALKPQRVAGA KW++PRVSRRKANVLR++A+ DGSFGSVV+D+DTGKAIGGWDPAWDIF  PAPRPL PPKLHKN+RDRA RA+KITAKLGEQEARLKDLNRVKAVPKPKPEDG LALLRWLK SGA+KKR
Sbjct:    1 MNRLVRFGAEALKPQRVAGAHKWQTPRVSRRKANVLRKKAIRDGSFGSVVMDADTGKAIGGWDPAWDIFEAPAPRPLRPPKLHKNQRDRAQRAEKITAKLGEQEARLKDLNRVKAVPKPKPEDGTLALLRWLKTSGAAKKR 141
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: A0A7S2S2H4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2H4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 3.220e-17
Identity = 53/129 (41.09%), Postives = 75/129 (58.14%), Query Frame = 1 
Query:   10 LVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWL 396
            L   G+ AL+P ++A   +WR  +VS R A +LR+QA++DGS+GS V         GGWDPAWD F+ P  R   P K H +ER+R  R + I  KL +Q  ++  + + K   KPKP  G L+L + L
Sbjct:   15 LAELGSAALRPTKLADG-RWRKAQVSSRMAAMLRKQAIMDGSYGSFVPGQ------GGWDPAWDKFKRPIVR--KPFKKHGHERNRKDRFEAIQKKLSQQPEKIAAMRQDKIDAKPKP--GILSLYKRL 132
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: A0A7S4KCW7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCW7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 6.360e-15
Identity = 55/137 (40.15%), Postives = 76/137 (55.47%), Query Frame = 1 
Query:   10 LVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKPKPEDGALALLRWLKISGASKK 420
            L+R G +AL+PQ V   +KWR P +S RKA V+R+ A+ DG++GS   D + GK   GW+P WD  R      L  PK  K ER R ARA KI + L + + R++     K   KP+P  G L L++ +      KK
Sbjct:   19 LIRHGEQALRPQFVN--EKWRRPLISMRKAAVIRKGAIKDGTYGS--FDPENGK---GWNPMWDTPRKITS--LRLPKETKRERTREARASKIESLLEQADDRIETYRLEKEALKPEP--GVLNLIKKMNKGTRRKK 144
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: A0A5A8DUN1_CAFRO (Mitoc_mL59 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DUN1_CAFRO)

HSP 1 Score: 71.6 bits (174), Expect = 2.150e-13
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:   25 AEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVK 342
            A+ L  +  +GA  W+ PRVS R+A  +R++ALLDG+FGS   D++TGK   GWDPAWD  R     P  PPK HK++     R +KI   L  QE R+ D  + +
Sbjct:    3 ADLLPKKGASGA--WQKPRVSSRRAARIRKEALLDGTFGSW--DAETGK---GWDPAWDKPRLSTVPP--PPKGHKHDHRLGERLEKIQRALANQEQRVADFQKTR 99
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: K0SE86_THAOC (Mitoc_mL59 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SE86_THAOC)

HSP 1 Score: 71.6 bits (174), Expect = 6.560e-13
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 1 
Query:    1 MNRLVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIFRTPAPR---------------PLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKPKP 363
            + +L + G EAL+PQRV    +WR P VSRR A  LR+ A+  G++G+   D++TG    GWDP WD   +P  R                + PPK HK++R R ARA +I A L + + ++++        KPKP
Sbjct:   28 LRKLCQHGIEALRPQRVND--RWRKPMVSRRVAADLRKAAIRSGTYGT--FDAETGI---GWDPIWD---SPQRRRGVDEILGSNQSKIHSIRPPKEHKHDRTREARAQQIEALLAQADDKIEEFRLEIEAKKPKP 153
[Close]
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Match: B7FS15_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS15_PHATC)

HSP 1 Score: 64.3 bits (155), Expect = 3.590e-10
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1 
Query:    1 MNRLVRFGAEALKPQRVAGA----QKWRSPRVSRRKANVLRRQALLDGSFGSVVIDSDTGKAIGGWDPAWDIF----------RTPAPRPLMPPKLHKNERDRAARADKITAKLGEQEARLKDLNRVKAVPKP 357
            + +L + G+EAL+P+ V       + WR+P +S R A  LR+QA++D ++GS   D++TG    GWDP WD+           R P+   +  PK  K  R R ARA KI A +   + R++D+ + +   KP
Sbjct:   21 VRKLAQHGSEALQPKAVISLVTKERVWRNPLISNRIARTLRKQAIVDKTYGS--FDAETGI---GWDPQWDVQVAINKAQGQGRYPS---IKIPKKTKRNRTREARALKIEANMVGMDERMEDIWKQRQASKP 145
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5500.13775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCG4_9PHAE1.760e-8388.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE47_ECTSI2.150e-8387.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2S2H4_9STRA3.220e-1741.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4KCW7_9STRA6.360e-1540.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A5A8DUN1_CAFRO2.150e-1343.40Mitoc_mL59 domain-containing protein n=3 Tax=Cafet... [more]
K0SE86_THAOC6.560e-1336.76Mitoc_mL59 domain-containing protein n=1 Tax=Thala... [more]
B7FS15_PHATC3.590e-1034.59Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5500contigL-elsbetiae_contig5500:6175..8311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue5.1e-64
Seed eggNOG ortholog2880.D8LE47
Hectar predicted targeting categoryother localisation
EggNOG OGs2EAW9@1,2SH2Q@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004100.1
Exons3
Model size426
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5500.13775.1prot_L-elsbetiae_contig5500.13775.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5500 6175..8311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816578.4384153-CDS-L-elsbetiae_contig5500:6174..63341622816578.4384153-CDS-L-elsbetiae_contig5500:6174..6334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 6175..6334 +
1691683660.4920902-CDS-L-elsbetiae_contig5500:6174..63341691683660.4920902-CDS-L-elsbetiae_contig5500:6174..6334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 6175..6334 +
1622816578.4502864-CDS-L-elsbetiae_contig5500:7284..74091622816578.4502864-CDS-L-elsbetiae_contig5500:7284..7409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 7285..7409 +
1691683660.5120993-CDS-L-elsbetiae_contig5500:7284..74091691683660.5120993-CDS-L-elsbetiae_contig5500:7284..7409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 7285..7409 +
1622816578.4618957-CDS-L-elsbetiae_contig5500:8170..83111622816578.4618957-CDS-L-elsbetiae_contig5500:8170..8311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 8171..8311 +
1691683660.5287635-CDS-L-elsbetiae_contig5500:8170..83111691683660.5287635-CDS-L-elsbetiae_contig5500:8170..8311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5500 8171..8311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5500.13775.1

>prot_L-elsbetiae_contig5500.13775.1 ID=prot_L-elsbetiae_contig5500.13775.1|Name=mRNA_L-elsbetiae_contig5500.13775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=142bp
MNRLVRFGAEALKPQRVAGAQKWRSPRVSRRKANVLRRQALLDGSFGSVV
IDSDTGKAIGGWDPAWDIFRTPAPRPLMPPKLHKNERDRAARADKITAKL
GEQEARLKDLNRVKAVPKPKPEDGALALLRWLKISGASKKR*
back to top

mRNA from alignment at L-elsbetiae_contig5500:6175..8311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5500.13775.1 ID=mRNA_L-elsbetiae_contig5500.13775.1|Name=mRNA_L-elsbetiae_contig5500.13775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2137bp|location=Sequence derived from alignment at L-elsbetiae_contig5500:6175..8311+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCGACTAGTGAGGTTTGGAGCGGAGGCTTTGAAGCCGCAGAGGGT
TGCCGGGGCACAAAAATGGCGATCGCCGAGGGTGTCAAGGCGAAAGGCGA
ACGTGCTGCGCAGGCAGGCGCTGCTGGACGGGTCCTTCGGCTCCGTGGTG
ATCGATTCAGGTGACCTTTGCTCACGAGCTTTCCGCACGCCCACATGGTG
ACCTTAGATACTGATCGTCGCCTTTTGCATGGAGCAAATATTGTCGAAAT
TCGTTCGATTGCTGTGAAATAGCTGATGTGTACTTTATTGGAGTACTCAA
CGACTGCTGTTCGGTGTGCCTCGAGCGATAACTTATGACATAAGATACCA
CACCCCCTCGGGGGGCTTTGGTGTTGACTCCAGTGTGAGAGGGGGGAGAA
AAGTCCCAACGAAGATAGATAGCAGCGCTGAGCAAGTAATCTCACCGAGA
GTTGTGTATTTTTATATTTGTATGGTTTGACCGTGACCCTTCTCTGCTGA
TAGGTAAAGAGTCGGGGGTATGTAGGTATAATGACGGTTCTTCCGTTGCT
GCTTGCTGTGAAGCCAGTCTCTTCGTCCATCAATATGTGAAACGCGCTCA
TATATAGAAGTATAAGAATATCGAGTAACCGTAAAGCACTGACGAATTGG
GAGTTGGATTTTTCGCCTTCAGGGCTTGTCTTGGCCGCGAGCATCGAAGG
GTAGGGATTATTTTCTGCAAACTTGGCACACCTTACCGGGCTCAGGTTCC
AGAGAGAGGCGATTTCGGGAAGAGGTCTGATAGAGGTTCCAGTTTACAGC
AGAAGGGACGGTGGAGGGTTGTAGCAATGTTTAAACGTCGAGCATAGCAT
GGCCGAAAATGGTGAGAATATGTTGCCAAAAGCCATTAAAAAACCAAAAA
CCTCCCGAGTGAGGCCCCGCAACGTTTTCAAAACCGTACCCCCGCCCGTC
CGAAACAACCAAACCTTTACTCTCACACCCTTTTCACATCATGGAGCGCA
TGTATGTACGCCTCATATTTCCGAAACTCGATTCCAACCCGAGCCTTGCA
ACTTGCTTTTTCTCCCCTCCGGCTTTTCGAAAACCGCGAACTCGCCCGTT
CACTGGCTAGACACCGGGAAGGCGATTGGCGGGTGGGATCCAGCTTGGGA
CATCTTTCGAACGCCAGCCCCGCGACCGTTGATGCCACCTAAGCTGCACA
AGAACGAGCGAGACAGAGCGGCGCGCGCCGATAAGGTGGGAGCTTGGGGG
ATGCCACGCGCTTGACGTAGTCAGTGCTGCCTGTTTATTTTGTTAATTAT
ATTTTGGCATGTATGTATGTAGAGGCGGCACTACAATATTTAGACCACTG
CTGTATGCCCCTTGGGTTGGTTGTGCCGACGGGACAATGGGAAGAGGGGG
CAAAAGGGGTGTTGATCGCAGGTGGGACTCTGGAGGGCTATTGCTGCACA
AGTGCGTGCTTTGGTAGATCCGGAGGTTGTGTGCTGGTTATCTTCTTCGC
GCCAACACACAACCGTAGTGCACAGGTTTGGTCGCAGAAAACCACAATAA
CATTACGGCTTCATGTCGGCTGGGGCTGGGCGTTTTCCCGCCTGGATTCA
CCTGTAGTAGGTCGCTCAATGTTGGAACGAACACGTTCTCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCGGTCTCTTGCTGCGGTCTGTTGTCATC
CATATCCCTCTCTCCTCCTATCCCTCGCGCCAACTCAACAAGGGCAACTG
TTTGCCTCCACAGTCGGAGAGGAACGAGATAGGCATGATTTTGTTGGCGA
TTCCCTGTGATTGCACCCACCACTGTTTGCTGCCGCCTGCTTGTAGGTGT
TACAGGCCAACGCAGCCCAATTGCTGTCGTGCCACAACCATGACAGTAGT
GCGCGCTGCGTCGAGCCGCGCTTCCCGCGTTGTTATTTGCAACACGATTG
CCGGTCAACCACCCACCCACATACCCGACCAATTATCTCGTCGCAGATTA
CGGCCAAGCTAGGAGAGCAGGAAGCCAGACTGAAGGACCTTAACCGAGTC
AAAGCGGTGCCCAAGCCTAAGCCGGAAGATGGAGCCCTGGCTCTCCTCAG
ATGGCTCAAGATCAGCGGGGCTTCGAAGAAGAGATAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5500:6175..8311+

>mRNA_L-elsbetiae_contig5500.13775.1 ID=mRNA_L-elsbetiae_contig5500.13775.1|Name=mRNA_L-elsbetiae_contig5500.13775.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=852bp|location=Sequence derived from alignment at L-elsbetiae_contig5500:6175..8311+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAATCGACTAGTGAGGTTTGGAGCGGAGGCTTTGAAGCCGCAGAGGGT
TGCCGGGGCACAAAAATGGCGATCGCCGAGGGTGTCAAGGCGAAAGGCGA
ACGTGCTGCGCAGGCAGGCGCTGCTGGACGGGTCCTTCGGCTCCGTGGTG
ATCGATTCAGATGAATCGACTAGTGAGGTTTGGAGCGGAGGCTTTGAAGC
CGCAGAGGGTTGCCGGGGCACAAAAATGGCGATCGCCGAGGGTGTCAAGG
CGAAAGGCGAACGTGCTGCGCAGGCAGGCGCTGCTGGACGGGTCCTTCGG
CTCCGTGGTGATCGATTCAGACACCGGGAAGGCGATTGGCGGGTGGGATC
CAGCTTGGGACATCTTTCGAACGCCAGCCCCGCGACCGTTGATGCCACCT
AAGCTGCACAAGAACGAGCGAGACAGAGCGGCGCGCGCCGATAAGACACC
GGGAAGGCGATTGGCGGGTGGGATCCAGCTTGGGACATCTTTCGAACGCC
AGCCCCGCGACCGTTGATGCCACCTAAGCTGCACAAGAACGAGCGAGACA
GAGCGGCGCGCGCCGATAAGATTACGGCCAAGCTAGGAGAGCAGGAAGCC
AGACTGAAGGACCTTAACCGAGTCAAAGCGGTGCCCAAGCCTAAGCCGGA
AGATGGAGCCCTGGCTCTCCTCAGATGGCTCAAGATCAGCGGGGCTTCGA
AGAAGAGATAAATTACGGCCAAGCTAGGAGAGCAGGAAGCCAGACTGAAG
GACCTTAACCGAGTCAAAGCGGTGCCCAAGCCTAAGCCGGAAGATGGAGC
CCTGGCTCTCCTCAGATGGCTCAAGATCAGCGGGGCTTCGAAGAAGAGAT
AA
back to top