mRNA_L-elsbetiae_contig550.13771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig550.13771.1
Unique NamemRNA_L-elsbetiae_contig550.13771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig550.13771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig550contigL-elsbetiae_contig550:15673..16453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size412
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig550.13771.1prot_L-elsbetiae_contig550.13771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig550 15730..16374 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.849429-UTR-L-elsbetiae_contig550:15672..157291622816577.849429-UTR-L-elsbetiae_contig550:15672..15729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig550 15673..15729 -
1691683660.082728-UTR-L-elsbetiae_contig550:15672..157291691683660.082728-UTR-L-elsbetiae_contig550:15672..15729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig550 15673..15729 -
1622816577.8882656-UTR-L-elsbetiae_contig550:16374..164531622816577.8882656-UTR-L-elsbetiae_contig550:16374..16453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig550 16375..16453 -
1691683660.1259658-UTR-L-elsbetiae_contig550:16374..164531691683660.1259658-UTR-L-elsbetiae_contig550:16374..16453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig550 16375..16453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816577.8626719-CDS-L-elsbetiae_contig550:15729..157521622816577.8626719-CDS-L-elsbetiae_contig550:15729..15752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig550 15730..15752 -
1691683660.0976164-CDS-L-elsbetiae_contig550:15729..157521691683660.0976164-CDS-L-elsbetiae_contig550:15729..15752Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig550 15730..15752 -
1622816577.877112-CDS-L-elsbetiae_contig550:16121..163741622816577.877112-CDS-L-elsbetiae_contig550:16121..16374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig550 16122..16374 -
1691683660.1129234-CDS-L-elsbetiae_contig550:16121..163741691683660.1129234-CDS-L-elsbetiae_contig550:16121..16374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig550 16122..16374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig550.13771.1

>prot_L-elsbetiae_contig550.13771.1 ID=prot_L-elsbetiae_contig550.13771.1|Name=mRNA_L-elsbetiae_contig550.13771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
MLLPTVPDRTRLQRIRSSSSPQGKTPFLLPAEHVCVDHFRSRLVKPYFGL
EKRGRDTLNIPLLHECRVVFYGVIHYCCTWYPRRAEAQQLP*
back to top

mRNA from alignment at L-elsbetiae_contig550:15673..16453-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig550.13771.1 ID=mRNA_L-elsbetiae_contig550.13771.1|Name=mRNA_L-elsbetiae_contig550.13771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=781bp|location=Sequence derived from alignment at L-elsbetiae_contig550:15673..16453- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCTTTTCATCGCTATCCCCGCCGCACTAGCTGTCCTTTCCACTGG
TGTGGAGTGCTTCGTACCAGGCGGGGGTAATGCTTTTGCCCACGGTACCC
GATCGAACGCGATTGCAGCGAATTCGGTCTTCGTCCAGCCCACAAGGCAA
GACCCCGTTCCTGCTGCCTGCTGAACATGTGTGTGTAGACCACTTTCGCA
GTCGACTGGTGAAACCGTACTTCGGGCTGGAGAAGCGGGGTAGAGATACT
CTAAACATACCGCTGCTGCACGAGTGCCGTGTAGTTTTCTACGGCGTAAT
CCACTACTGTTGCACTTGGTATCCCAGACGAGGTACTGCCGTAGGTTACT
GACCGACTCTTGTTGTGGTTTTCACAGCCGAGGCGAGCATGGAAAACTGA
GCCCTTTTTCTTGGGAGGGGGGAGTTGGCTCTCTTGCAATCACAGAGTTT
TTTTTCAAAAATGTTTCCTGCAGGTGGCCCCGGGGGGTGGGTCTCAGTCT
TGTTCAGCAAAATGTTCGCTGTAGTCTATGTGGCCCCGGGGGTGTCTTGT
TAGCAGTAGGGCGCAACGGAAGGAACCGGTTCCCGACTACGTCAGTACCT
AGTGGACCGATTGCCGCTTGCCGTACCCCATCAATGTGTACTTTGCCTGT
CTTCAGCACCATCCAGTGACCACTCTCCATGGTATCTACCCCACAAAACA
GCAGAGGCGCAGCAACTTCCGTAACGCGTGGCCAGCGGAGCAGCGATCTC
AGCATGTCGTCGACGGTGGTGATTCCTGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig550:15673..16453-

>mRNA_L-elsbetiae_contig550.13771.1 ID=mRNA_L-elsbetiae_contig550.13771.1|Name=mRNA_L-elsbetiae_contig550.13771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig550:15673..16453- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTGCCCACGGTACCCGATCGAACGCGATTGCAGCGAATTCGGTC
TTCGTCCAGCCCACAAGGCAAGACCCCGTTCCTGCTGCCTGCTGAACATG
TGTGTGTAGACCACTTTCGCAGTCGACTGGTGAAACCGTACTTCGGGCTG
GAGAAGCGGGGTAGAGATACTCTAAACATACCGCTGCTGCACGAGTGCCG
TGTAGTTTTCTACGGCGTAATCCACTACTGTTGCACTTGGTATCCCAGAC
GAGATGCTTTTGCCCACGGTACCCGATCGAACGCGATTGCAGCGAATTCG
GTCTTCGTCCAGCCCACAAGGCAAGACCCCGTTCCTGCTGCCTGCTGAAC
ATGTGTGTGTAGACCACTTTCGCAGTCGACTGGTGAAACCGTACTTCGGG
CTGGAGAAGCGGGGTAGAGATACTCTAAACATACCGCTGCTGCACGAGTG
CCGTGTAGTTTTCTACGGCGTAATCCACTACTGTTGCACTTGGTATCCCA
GACGAGCAGAGGCGCAGCAACTTCCGTAACAGAGGCGCAGCAACTTCCGT
AA
back to top