mRNA_L-elsbetiae_contig5496.13756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5496.13756.1
Unique NamemRNA_L-elsbetiae_contig5496.13756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5496.13756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5496contigL-elsbetiae_contig5496:3309..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size358
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5496.13756.1prot_L-elsbetiae_contig5496.13756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5496 3311..3637 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.4732127-UTR-L-elsbetiae_contig5496:3308..33101622816576.4732127-UTR-L-elsbetiae_contig5496:3308..3310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5496 3309..3310 +
1691683659.1583962-UTR-L-elsbetiae_contig5496:3308..33101691683659.1583962-UTR-L-elsbetiae_contig5496:3308..3310Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5496 3309..3310 +
1622816576.4991815-UTR-L-elsbetiae_contig5496:3637..36661622816576.4991815-UTR-L-elsbetiae_contig5496:3637..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5496 3638..3666 +
1691683659.1805675-UTR-L-elsbetiae_contig5496:3637..36661691683659.1805675-UTR-L-elsbetiae_contig5496:3637..3666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5496 3638..3666 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816576.4845233-CDS-L-elsbetiae_contig5496:3310..36371622816576.4845233-CDS-L-elsbetiae_contig5496:3310..3637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5496 3311..3637 +
1691683659.1695833-CDS-L-elsbetiae_contig5496:3310..36371691683659.1695833-CDS-L-elsbetiae_contig5496:3310..3637Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5496 3311..3637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5496.13756.1

>prot_L-elsbetiae_contig5496.13756.1 ID=prot_L-elsbetiae_contig5496.13756.1|Name=mRNA_L-elsbetiae_contig5496.13756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MSGWLLCDVHSASHGYASSACRIYLCEREIIDSYTDKRNSQHPAAVVVAA
AAGLVETKHNVIASAAAVQLHALPFVTHTAVVSMFRLARARRKTDGFSDH
FSYHPKPI*
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mRNA from alignment at L-elsbetiae_contig5496:3309..3666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5496.13756.1 ID=mRNA_L-elsbetiae_contig5496.13756.1|Name=mRNA_L-elsbetiae_contig5496.13756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=358bp|location=Sequence derived from alignment at L-elsbetiae_contig5496:3309..3666+ (Laminarionema elsbetiae ELsaHSoW15)
GGATGAGTGGTTGGTTGTTGTGTGATGTGCATAGTGCGTCGCATGGGTAT
GCGTCATCGGCGTGTAGAATATATTTGTGTGAGAGAGAGATAATAGATTC
GTACACAGATAAACGCAACTCGCAACACCCAGCAGCAGTGGTGGTGGCGG
CAGCAGCAGGCCTTGTTGAGACGAAACATAACGTTATAGCCTCTGCTGCT
GCTGTACAACTCCATGCATTGCCATTCGTTACTCATACTGCTGTCGTCTC
GATGTTCCGACTTGCCCGGGCCCGCAGAAAAACGGACGGTTTCAGTGATC
ATTTTTCTTATCACCCAAAACCCATTTGAAGTCCCAGAAGGGTCAATTAA
CATTTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5496:3309..3666+

>mRNA_L-elsbetiae_contig5496.13756.1 ID=mRNA_L-elsbetiae_contig5496.13756.1|Name=mRNA_L-elsbetiae_contig5496.13756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig5496:3309..3666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGGTTGGTTGTTGTGTGATGTGCATAGTGCGTCGCATGGGTATGC
GTCATCGGCGTGTAGAATATATTTGTGTGAGAGAGAGATAATAGATTCGT
ACACAGATAAACGCAACTCGCAACACCCAGCAGCAGTGGTGGTGGCGGCA
GCAGCAGGCCTTGTTGAGACGAAACATAACGTTATAGCCTCTGCTGCTGC
TGTACAACTCCATGCATTGCCATTCGTTACTCATACTGCTGTCGTCTCGA
TGTTCCGACTTGCCCGGGCCCGCAGAAAAACGGACGGTTTCAGTGATCAT
TTTTCTTATCACCCAAAACCCATTTGAATGAGTGGTTGGTTGTTGTGTGA
TGTGCATAGTGCGTCGCATGGGTATGCGTCATCGGCGTGTAGAATATATT
TGTGTGAGAGAGAGATAATAGATTCGTACACAGATAAACGCAACTCGCAA
CACCCAGCAGCAGTGGTGGTGGCGGCAGCAGCAGGCCTTGTTGAGACGAA
ACATAACGTTATAGCCTCTGCTGCTGCTGTACAACTCCATGCATTGCCAT
TCGTTACTCATACTGCTGTCGTCTCGATGTTCCGACTTGCCCGGGCCCGC
AGAAAAACGGACGGTTTCAGTGATCATTTTTCTTATCACCCAAAACCCAT
TTGA
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