mRNA_L-elsbetiae_contig5488.13750.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5488.13750.1
Unique NamemRNA_L-elsbetiae_contig5488.13750.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5488.13750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5488contigL-elsbetiae_contig5488:4623..5185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5488.13750.1prot_L-elsbetiae_contig5488.13750.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5488 4645..5091 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.4147713-UTR-L-elsbetiae_contig5488:4622..46441622816575.4147713-UTR-L-elsbetiae_contig5488:4622..4644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5488 4623..4644 +
1691683658.2313497-UTR-L-elsbetiae_contig5488:4622..46441691683658.2313497-UTR-L-elsbetiae_contig5488:4622..4644Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5488 4623..4644 +
1622816575.4340718-UTR-L-elsbetiae_contig5488:5091..51851622816575.4340718-UTR-L-elsbetiae_contig5488:5091..5185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5488 5092..5185 +
1691683658.2489245-UTR-L-elsbetiae_contig5488:5091..51851691683658.2489245-UTR-L-elsbetiae_contig5488:5091..5185Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5488 5092..5185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.4248724-CDS-L-elsbetiae_contig5488:4644..50911622816575.4248724-CDS-L-elsbetiae_contig5488:4644..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5488 4645..5091 +
1691683658.2403297-CDS-L-elsbetiae_contig5488:4644..50911691683658.2403297-CDS-L-elsbetiae_contig5488:4644..5091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5488 4645..5091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5488.13750.1

>prot_L-elsbetiae_contig5488.13750.1 ID=prot_L-elsbetiae_contig5488.13750.1|Name=mRNA_L-elsbetiae_contig5488.13750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MYTVGDGEGKREKESSAGFCRQQKSERLPRLLLSKFYCVPEVALSPPARR
QVDDARTGLRCNVHRVPNTADLFIFVPIIQHSSAHVNKRGWRKPPNARWI
SPPQRKANSPLENPSQDPGPPKRNRFETERKNSYISRGDRGALNMYVV*
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mRNA from alignment at L-elsbetiae_contig5488:4623..5185+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5488.13750.1 ID=mRNA_L-elsbetiae_contig5488.13750.1|Name=mRNA_L-elsbetiae_contig5488.13750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=563bp|location=Sequence derived from alignment at L-elsbetiae_contig5488:4623..5185+ (Laminarionema elsbetiae ELsaHSoW15)
CAAGAGTTGCGCCCATTCACTCATGTACACCGTCGGAGACGGAGAAGGGA
AGAGAGAGAAAGAAAGCTCTGCCGGATTCTGCCGCCAGCAGAAAAGTGAA
AGGTTACCTAGATTACTGCTGTCGAAGTTTTATTGTGTACCAGAAGTAGC
GCTTTCTCCCCCAGCCAGAAGGCAAGTCGATGATGCCCGGACGGGACTGC
GCTGTAATGTACACCGCGTCCCAAATACCGCTGATCTCTTCATCTTTGTA
CCTATTATCCAACATAGCAGCGCACATGTCAACAAACGTGGCTGGAGGAA
ACCACCCAACGCGCGGTGGATATCGCCACCCCAAAGAAAAGCCAACTCGC
CGCTTGAGAACCCTTCCCAGGATCCAGGACCCCCAAAGAGGAACCGCTTC
GAAACAGAAAGAAAAAACAGTTACATTTCTCGAGGGGATCGCGGCGCCTT
AAATATGTATGTAGTCTAGATACTTAACCGGGAACCGCTTCGAAACAGAA
AGAAAAAATTGTTTAATTTACTCCTCTCTGGCCGACCACTCTCTGACACG
CTACAACAAAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5488:4623..5185+

>mRNA_L-elsbetiae_contig5488.13750.1 ID=mRNA_L-elsbetiae_contig5488.13750.1|Name=mRNA_L-elsbetiae_contig5488.13750.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig5488:4623..5185+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTACACCGTCGGAGACGGAGAAGGGAAGAGAGAGAAAGAAAGCTCTGC
CGGATTCTGCCGCCAGCAGAAAAGTGAAAGGTTACCTAGATTACTGCTGT
CGAAGTTTTATTGTGTACCAGAAGTAGCGCTTTCTCCCCCAGCCAGAAGG
CAAGTCGATGATGCCCGGACGGGACTGCGCTGTAATGTACACCGCGTCCC
AAATACCGCTGATCTCTTCATCTTTGTACCTATTATCCAACATAGCAGCG
CACATGTCAACAAACGTGGCTGGAGGAAACCACCCAACGCGCGGTGGATA
TCGCCACCCCAAAGAAAAGCCAACTCGCCGCTTGAGAACCCTTCCCAGGA
TCCAGGACCCCCAAAGAGGAACCGCTTCGAAACAGAAAGAAAAAACAGTT
ACATTTCTCGAGGGGATCGCGGCGCCTTAAATATGTATGTAGTCTAGATG
TACACCGTCGGAGACGGAGAAGGGAAGAGAGAGAAAGAAAGCTCTGCCGG
ATTCTGCCGCCAGCAGAAAAGTGAAAGGTTACCTAGATTACTGCTGTCGA
AGTTTTATTGTGTACCAGAAGTAGCGCTTTCTCCCCCAGCCAGAAGGCAA
GTCGATGATGCCCGGACGGGACTGCGCTGTAATGTACACCGCGTCCCAAA
TACCGCTGATCTCTTCATCTTTGTACCTATTATCCAACATAGCAGCGCAC
ATGTCAACAAACGTGGCTGGAGGAAACCACCCAACGCGCGGTGGATATCG
CCACCCCAAAGAAAAGCCAACTCGCCGCTTGAGAACCCTTCCCAGGATCC
AGGACCCCCAAAGAGGAACCGCTTCGAAACAGAAAGAAAAAACAGTTACA
TTTCTCGAGGGGATCGCGGCGCCTTAAATATGTATGTAGTCTAG
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