Homology
BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Match:
A0A6H5K4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N3_9PHAE)
HSP 1 Score: 166 bits (419), Expect = 8.930e-46
Identity = 83/136 (61.03%), Postives = 102/136 (75.00%), Query Frame = -2
Query: 6 FKYAKRQILADGIGKNTARRVAVGDTAAMLDITAGFTPEKKTSKKAKA---WRTGDEPERSEAFLVLLCCHMANDSTFQGRVDCFTQKSRLSSEDKSTRPDLKWYRDIAADMVNVDFVDDYGNAISFPSNHANDDP 404
+K +R++LAD + K R++A G+T+A+ I AGFTPE KT KK KA +TGDEPER E FLVLLCCH+ANDSTF+G DCFTQKSRLS EDK P KWYR IA DMVN+++ DD+GNAIS P NH+ D+P
Sbjct: 187 YKSLRRELLADAVDKCIKRKIAEGETSALKKIPAGFTPE-KTVKKGKAPAAGKTGDEPERKENFLVLLCCHLANDSTFEGFQDCFTQKSRLSLEDKKHNPKKKWYRHIARDMVNLEYKDDHGNAISVPVNHSYDNP 321
BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Match:
A0A6H5KBH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH9_9PHAE)
HSP 1 Score: 94.7 bits (234), Expect = 2.330e-20
Identity = 52/133 (39.10%), Postives = 75/133 (56.39%), Query Frame = -2
Query: 6 FKYAKRQILADGIGKNTARRVAVGDTAAMLDITAGFTPEKKTSKKAKAWRTGDEPERSEAFLVLLCCHMANDSTFQGRVDCFTQKSRLSSEDKSTRPDLKWYRDIAADMVNVDFVDDYGNAISFPSNHANDDP 404
+ K +LA+ + K +V +G A+ G TPEK +K K +T +PER FLVLL CH+ NDSTF G + K+R +D S K+Y +A DM+++DF DD+GN IS P +H++D P
Sbjct: 77 YNSEKVVVLANSLDKYWDWQVEIGKHGALRSWYQGTTPEKSVAK-GKGGKTSADPERKPHFLVLLVCHLGNDSTFNGFLKLCEPKTRHDVKDPSNSDAAKFYMALARDMLDLDFKDDHGNEISIPVSHSHDKP 208
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5486.13748.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.93e-46 / Id = 61.03 Expect = 2.33e-20 / Id = 39.10 Sequence A0A6H5K4N3_9PHAE A0A6H5KBH9_9PHAE
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 407
Cds size 327
Stop 0
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816575.2571006-UTR-L-elsbetiae_contig5486:2754..2832 1622816575.2571006-UTR-L-elsbetiae_contig5486:2754..2832 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5486 2755..2832 +
1691683658.131378-UTR-L-elsbetiae_contig5486:2754..2832 1691683658.131378-UTR-L-elsbetiae_contig5486:2754..2832 Laminarionema elsbetiae ELsaHSoW15 UTR L-elsbetiae_contig5486 2755..2832 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816575.268444-CDS-L-elsbetiae_contig5486:2832..3159 1622816575.268444-CDS-L-elsbetiae_contig5486:2832..3159 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5486 2833..3159 +
1691683658.1418352-CDS-L-elsbetiae_contig5486:2832..3159 1691683658.1418352-CDS-L-elsbetiae_contig5486:2832..3159 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5486 2833..3159 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5486.13748.1
>prot_L-elsbetiae_contig5486.13748.1 ID=prot_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MSAAMSRYHFKSGLVLLSSDDRRLFCVKQSTLPWNVESFAMWQHSRTRKA SLRSGSSPVLQALAFFEVFFSGVKPAVISSMAAVSPTATLLAVFLPIPSA RICLFAYLK back to top mRNA from alignment at L-elsbetiae_contig5486:2755..3159+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5486.13748.1 ID=mRNA_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=405bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:2755..3159+ (Laminarionema elsbetiae ELsaHSoW15)GCCGCTGGATCGTCGTTGGCGTGATTGGAGGGGAAGGAGATGGCGTTCCC
GTAATCGTCGACGAAGTCCACGTTGACC ATGTCGGCCGCGATGTCTCGGT
ACCACTTCAAGTCCGGTCTCGTACTTTTGTCTTCGGATGACAGGCGACTC
TTCTGCGTGAAACAGTCGACCCTCCCTTGGAACGTAGAATCGTTCGCCAT
GTGGCAGCACAGCAGGACGAGGAAGGCCTCGCTGCGCTCGGGCTCGTCCC
CGGTCCTCCAAGCTTTGGCCTTCTTTGAGGTCTTCTTCTCTGGGGTGAAG
CCAGCCGTAATATCGAGCATGGCTGCCGTGTCACCGACGGCCACCCTTCT
CGCGGTGTTCTTGCCGATACCGTCGGCAAGAATCTGCCTCTTCGCATATT
TGAAG back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5486:2755..3159+
>mRNA_L-elsbetiae_contig5486.13748.1 ID=mRNA_L-elsbetiae_contig5486.13748.1|Name=mRNA_L-elsbetiae_contig5486.13748.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:2755..3159+ (Laminarionema elsbetiae ELsaHSoW15) ATGTCGGCCGCGATGTCTCGGTACCACTTCAAGTCCGGTCTCGTACTTTT GTCTTCGGATGACAGGCGACTCTTCTGCGTGAAACAGTCGACCCTCCCTT GGAACGTAGAATCGTTCGCCATGTGGCAGCACAGCAGGACGAGGAAGGCC TCGCTGCGCTCGGGCTCGTCCCCGGTCCTCCAAGCTTTGGCCTTCTTTGA GGTCTTCTTCTCTGGGGTGAAGCCAGCCGTAATATCGAGCATGGCTGCCG TGTCACCGACGGCCACCCTTCTCGCGGTGTTCTTGCCGATACCGTCGGCA AGAATCTGCCTCTTCGCATATTTGAAGATGTCGGCCGCGATGTCTCGGTA CCACTTCAAGTCCGGTCTCGTACTTTTGTCTTCGGATGACAGGCGACTCT TCTGCGTGAAACAGTCGACCCTCCCTTGGAACGTAGAATCGTTCGCCATG TGGCAGCACAGCAGGACGAGGAAGGCCTCGCTGCGCTCGGGCTCGTCCCC GGTCCTCCAAGCTTTGGCCTTCTTTGAGGTCTTCTTCTCTGGGGTGAAGC CAGCCGTAATATCGAGCATGGCTGCCGTGTCACCGACGGCCACCCTTCTC GCGGTGTTCTTGCCGATACCGTCGGCAAGAATCTGCCTCTTCGCATATTT GAAG back to top