mRNA_L-elsbetiae_contig5486.13747.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5486.13747.1
Unique NamemRNA_L-elsbetiae_contig5486.13747.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5486.13747.1 vs. uniprot
Match: A0A6H5K4N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4N3_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.830e-26
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:    1 MVNVDFVDDYGNAISFPSNHANDDPAAPASLHEALDSVNLGLSKRELHARYGEDTTPLENVLSDWLLCLASENTDVLRKTDLSGGFGADEAQDGSG 288
            MVN+++ DD+GNAIS P NH+ D+P AP  L EALD ++   +KREL+A YGEDT+PLE  +  WL  LA ENT+++RK D SGG GAD A D  G
Sbjct:  297 MVNLEYKDDHGNAISVPVNHSYDNPEAPEELFEALDGIDFERTKRELNALYGEDTSPLERQVPVWLRYLAGENTELIRKRDASGGVGADAADDDEG 392
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5486.13747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K4N3_9PHAE8.830e-2656.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5486contigL-elsbetiae_contig5486:1590..2834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size293
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816575.2118692-CDS-L-elsbetiae_contig5486:1589..16581622816575.2118692-CDS-L-elsbetiae_contig5486:1589..1658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 1590..1658 -
1691683658.0948756-CDS-L-elsbetiae_contig5486:1589..16581691683658.0948756-CDS-L-elsbetiae_contig5486:1589..1658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 1590..1658 -
1622816575.2219617-CDS-L-elsbetiae_contig5486:2612..28341622816575.2219617-CDS-L-elsbetiae_contig5486:2612..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 2613..2834 -
1691683658.1134613-CDS-L-elsbetiae_contig5486:2612..28341691683658.1134613-CDS-L-elsbetiae_contig5486:2612..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5486 2613..2834 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5486.13747.1prot_L-elsbetiae_contig5486.13747.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5486 1590..2834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5486.13747.1

>prot_L-elsbetiae_contig5486.13747.1 ID=prot_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=97bp
MVNVDFVDDYGNAISFPSNHANDDPAAPASLHEALDSVNLGLSKRELHAR
YGEDTTPLENVLSDWLLCLASENTDVLRKTDLSGGFGADEAQDGSGG
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mRNA from alignment at L-elsbetiae_contig5486:1590..2834-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5486.13747.1 ID=mRNA_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1245bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:1590..2834- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACGTGGACTTCGTCGACGATTACGGGAACGCCATCTCCTTCCC
CTCCAATCACGCCAACGACGATCCAGCGGCACCAGCGTCGTTGCACGAAG
CCCTTGACTCCGTCAACCTCGGGCTCAGCAAGCGCGAACTCCATGCGCGA
TACGGCGAGGACACGACTCCGCTGGAAAACGTGCTCAGCGACTGGCTCCT
CTGCTTGGCGTCGGAGAACACGGTGAGAATAACCTTGGAGCGAAAATCCT
CGATGCCGCCCGTACGGGACGTTACGTTTCTTCGTTTTTTTGTTCTACAG
TTCTATTGCGGATTGTACAATCCCTTGAAGACGCTTACTTTTATTTTCGC
CCCTCTACCTTTGAGAACGCCCCAGGGCGTTATTTTTTCGCTCAAGTTTC
CTTTTTTCCCCCGGGGGGTGGGCGGGGAGAGGGTGTCACAGGACAGTGCT
CCAACAGCTGCTGTTTGCTGTCTGTTGTTGTTTGAGGCGAGTTTTGTTTT
ATTTTTTGCCCGTAGATGTACTTCACCCCCGACATCGTGACGACCCCAAA
GCGTTGTTGTGTGTGTGTTGGCAAGGAAAAAAAAAAACGCCCACGAGGAC
ATATGTTACCCCTGTGTGTGTGTGTGTGTTGTCTTCACATCAAAAACCGT
TCCGATCTTTCTATCCAGTACACCTCCATGAGTCCGTACTAATCCAACAC
TGACGCAGTCGATTCCCGTGGTCACAGGATAATTCACCCTAAAAAGGGTA
CATAGACAGCTACTGAAACATGAAAATAAATAAAATGGACCTGAAGGGTC
CACAAAACACAAACACAAAAGATCAAGACACAGATAGTCTGGAGTCCTCC
GCTCCCCTCTACACGCTATGTGAGGCGAACACAAAAGTGGACAAGCCAAC
ATCACCAACCGCGGGGGGATACACCCCTGATTCTATCGCCTCTGGGCTTT
TTTTATTGTTTTGTGGAAATACTGCCTTTGAGAATACCGGGCGTTCTTTT
TAACTTCAAAATATAGATCGTCCCCGAGGGCGTGCTCAAAATATTACACC
GTCATCACTCATAAAATGTATGTGTCTGTGGTCAGGATTGGTTCCGATTT
CCTTCTTACCTGCTCGCTCCCCTTCCTTATGGCTCCCACTTCAACCGCCG
GCCCCGTCGAACCCTCACGTGTTTAGGACGTGCTGCGCAAAACAGACCTG
AGCGGCGGTTTCGGGGCGGACGAGGCCCAAGACGGTTCAGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5486:1590..2834-

>mRNA_L-elsbetiae_contig5486.13747.1 ID=mRNA_L-elsbetiae_contig5486.13747.1|Name=mRNA_L-elsbetiae_contig5486.13747.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=582bp|location=Sequence derived from alignment at L-elsbetiae_contig5486:1590..2834- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCAACGTGGACTTCGTCGACGATTACGGGAACGCCATCTCCTTCCC
CTCCAATCACGCCAACGACGATCCAGCGGCACCAGCGTCGTTGCACGAAG
CCCTTGACTCCGTCAACCTCGGGCTCAGCAAGCGCGAACTCCATGCGCGA
TACGGCGAGGACACGACTCCGCTGGAAAACGTGCTCAGCGACTGGCTCCT
CTGCTTGGCGTCGGAGAACACGATGGTCAACGTGGACTTCGTCGACGATT
ACGGGAACGCCATCTCCTTCCCCTCCAATCACGCCAACGACGATCCAGCG
GCACCAGCGTCGTTGCACGAAGCCCTTGACTCCGTCAACCTCGGGCTCAG
CAAGCGCGAACTCCATGCGCGATACGGCGAGGACACGACTCCGCTGGAAA
ACGTGCTCAGCGACTGGCTCCTCTGCTTGGCGTCGGAGAACACGGACGTG
CTGCGCAAAACAGACCTGAGCGGCGGTTTCGGGGCGGACGAGGCCCAAGA
CGGTTCAGGCGGCGACGTGCTGCGCAAAACAGACCTGAGCGGCGGTTTCG
GGGCGGACGAGGCCCAAGACGGTTCAGGCGGC
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