mRNA_L-elsbetiae_contig5475.13738.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5475.13738.1
Unique NamemRNA_L-elsbetiae_contig5475.13738.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5475.13738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5475contigL-elsbetiae_contig5475:2878..3177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816574.558425-CDS-L-elsbetiae_contig5475:2877..31771622816574.558425-CDS-L-elsbetiae_contig5475:2877..3177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5475 2878..3177 +
1691683657.6867275-CDS-L-elsbetiae_contig5475:2877..31771691683657.6867275-CDS-L-elsbetiae_contig5475:2877..3177Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5475 2878..3177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5475.13738.1prot_L-elsbetiae_contig5475.13738.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5475 2878..3177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5475.13738.1

>prot_L-elsbetiae_contig5475.13738.1 ID=prot_L-elsbetiae_contig5475.13738.1|Name=mRNA_L-elsbetiae_contig5475.13738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
GSLKAIHRCHKRAVFRLIMMITMMGLPCRRWEHLGTRFVLSRLHSTVLGQ
GESSTQAPNQRRCRLIRWQGESSLFLLYSTSSSRMGIVQINGLTRVVLW*
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mRNA from alignment at L-elsbetiae_contig5475:2878..3177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5475.13738.1 ID=mRNA_L-elsbetiae_contig5475.13738.1|Name=mRNA_L-elsbetiae_contig5475.13738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig5475:2878..3177+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCGCTGAAGGCAATACACAGATGCCACAAGAGGGCTGTGTTTCGATT
GATAATGATGATAACGATGATGGGCTTGCCGTGCCGGCGCTGGGAACATT
TAGGCACACGTTTCGTTTTGAGCAGACTACATAGTACGGTACTTGGCCAG
GGCGAAAGCAGCACACAAGCACCAAATCAGCGCAGATGTAGATTGATCAG
GTGGCAAGGAGAGTCGAGCTTATTCTTACTGTACAGTACCTCGTCCAGCC
GCATGGGCATCGTGCAGATAAACGGCTTGACACGCGTGGTGCTCTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5475:2878..3177+

>mRNA_L-elsbetiae_contig5475.13738.1 ID=mRNA_L-elsbetiae_contig5475.13738.1|Name=mRNA_L-elsbetiae_contig5475.13738.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig5475:2878..3177+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTCGCTGAAGGCAATACACAGATGCCACAAGAGGGCTGTGTTTCGATT
GATAATGATGATAACGATGATGGGCTTGCCGTGCCGGCGCTGGGAACATT
TAGGCACACGTTTCGTTTTGAGCAGACTACATAGTACGGTACTTGGCCAG
GGCGAAAGCAGCACACAAGCACCAAATCAGCGCAGATGTAGATTGATCAG
GTGGCAAGGAGAGTCGAGCTTATTCTTACTGTACAGTACCTCGTCCAGCC
GCATGGGCATCGTGCAGATAAACGGCTTGACACGCGTGGTGCTCTGGTAG
GGCTCGCTGAAGGCAATACACAGATGCCACAAGAGGGCTGTGTTTCGATT
GATAATGATGATAACGATGATGGGCTTGCCGTGCCGGCGCTGGGAACATT
TAGGCACACGTTTCGTTTTGAGCAGACTACATAGTACGGTACTTGGCCAG
GGCGAAAGCAGCACACAAGCACCAAATCAGCGCAGATGTAGATTGATCAG
GTGGCAAGGAGAGTCGAGCTTATTCTTACTGTACAGTACCTCGTCCAGCC
GCATGGGCATCGTGCAGATAAACGGCTTGACACGCGTGGTGCTCTGGTAG
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